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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046128 ID=TCONS_00046128|Name=TCONS_00046128|organism=Clytia hemisphaerica|type=transcript|length=2213bpRun BLAST on NCBI protein sequence of TCONS_00046128-protein >TCONS_00046128-protein ID=TCONS_00046128-protein|Name=TCONS_00046128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp MAEETKTTPEEKTEPMEQLDEKEPIKENGSAKEEKDEKEQTVEEGGDSEDRun BLAST on NCBI transcript from alignment at scaffold_106:59564..76518+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046128 ID=TCONS_00046128|Name=TCONS_00046128|organism=Clytia hemisphaerica|type=transcript|length=16955bp|location=Sequence derived from alignment at scaffold_106:59564..76518+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_106:59564..76518+ >TCONS_00046128 ID=TCONS_00046128|Name=TCONS_00046128|organism=Clytia hemisphaerica|type=CDS|length=15483bp|location=Sequence derived from alignment at scaffold_106:59564..76518+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046128 vs. Swiss-Prot (Human)
Match: DEK (Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.234e-16 Identity = 45/138 (32.61%), Postives = 79/138 (57.25%), Query Frame = 2
Query: 614 ILDRKRDRKSTERLALEKFSKPKTPRDELDFETGRGKKLGDIPYVKHMLDKTPADDLKFMHRLLFFKQQKVTMVKKSIRTFCGYPFDKESKFYERADDQMNKLVMPALRLILGILGLEKVGDKIAVKERLLEFLMEPK 1027
I++ KR++K ERL ++ S R+ G+G+KL +I + L K D+L+ +H+LL+ + V+ +KK++ F G+PF+K S Y++ ++ + K L+ I +L LE+ G + +R+L FLM PK
Sbjct: 53 IVEGKREKKKVERLTMQVSS---LQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPK 187 The following BLAST results are available for this feature:
BLAST of TCONS_00046128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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