TCONS_00046048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046048
Unique NameTCONS_00046048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046048 ID=TCONS_00046048|Name=TCONS_00046048|organism=Clytia hemisphaerica|type=transcript|length=1989bp
TTTCNAGTCAATCAGTTTCAGCAAAACGTCCAGATGGCACTCCCTGTCCA
CCGTTCAAGATTGTCATTTTAGATGAGGCTGACTCTATGACCAAACATGC
GCAGGCAGCCTTGAGACGGACAATGGAAAAACAGACGAAAACAACTCGTT
TCTGTCTCATCTGTAATTACGTCAGCAGaaTCATCGAACCAATAACTTCT
AGGTGTGCAAAGTTTCGTTTCAAACCTTTATCGATTGACACGATCACAGA
ACGATTAGCAATGATCTCCAAAGGGGAGAACGTCAAAATCAATAACTCAG
CCATCGATACTTTAATAAAAGCTGCAGAAGGCGACATGAGAAAGGCTATC
ACGTTTTTACAGAGTGCGCACAGGCTGAAAGCAGGCGAAGAGGAAATCAC
GTCTAATGACATCGTTGAAATGGCTGGAATAATCCCTGCCGAAATAATCG
AATCGCTCACTCAAACTTTTTCATCTGGATCTTTCGATAAATTGGATGCT
AAAATAAAGGAGATCATGATGAATGGATATTCGGGATCACAGCTTGTCAC
ACAGATACACGACAGCTTGGTGGAAAGTGAAGTGTTGAATGACAACCAGA
AAGCTGTCATCATGGAGAAGCTATCGGTTGTCGATAAATGTTTATGTGAT
GGGGCAGACGAATACCTTCAGATTATGGCCGCTGCGGCTGTTATTATGGA
ACAATTCAATAAACAGTAGGACTCAGGTATTGGATTGGCTTCAAAGACTA
CAATCATAAATTTGTTGGATTTGGCATGCGAGCATTACTCGACGAATAAA
ATGATAATTGGATAGCTTGTATTCAAGTATTCCAATGTGAAAATGAGACA
GATATGAACTTAAGGAAGCCCGTTAAACTGTTGAGAGGAAATGGATTTGA
TAGCTTTTTTTCATGATCACgggaaaactgaaaaaaatgtaaatatgagT
TCGTTAATAAGCCATTATCGTTTACTTGTTATACGACAGAAACTTGACTA
CGATATTTATACTTCATAAAGATGGGCTCTTTccgaaaatgttcgtacat
tggggtggaggatatagtgtccgggggtggtgaaaaatcgataaaattaG
CCTTGTCTGGGGGTTtttgggtaattttgaatatccagggggggtcaact
gatgcttgtccgggggggtcaaaagtcacaatatCTGGGGGTAAATATTC
TCCACTCTATATATTCAAGAAACTGAAAAAGCCCATTTCgttgaaaatgt
aaaataaaataaaatacggAAGAAATACTTATATTTCAAAGAGAAGATTT
GACAACATTTGAATAATCTGGTGCTGCCCAGTTCCCTTTGTCGAATGACC
AGATTTTCGCTTCCTCTAAAAGTTCTTTAGCAACTGCTGTCTTGAACATT
TTGTATTTAAAGAACTCTTCCATCCCTGATTCCGAGGATTTACCTCCTTG
CATAGCTGCTCCTTGAAGTTTCGTCTGGCGGTATTTATTGAAGGGCGCTT
CATTTTGTGTGAGATATTGGACGAATGCCAAAGCGCCCTTTACCCATTCG
TTATCATACTTCAAAAAGTGAATTCCGCATTCTTTATTCGTTGACATGAA
AAGGACGTCTTGATCGCTATGAGGTGCCGGATCGAACAAAACTTCGATAC
CGACTTCTTTTAGTTTGGTTTTCTGTTCTTCTGTCGGGGGAACGTTTTTC
ATGAACATTGCAAGATCGATCACTGACGTGCCTGGCATATCTAAAGACAA
AACAGGATTTTTATACTGTGAcatcaaagatttattatacactggataaa
cgactcataaaacgatggagagcgatcattgtattttcattgtttcagaa
aacgattgatgttctagctttgtccgcaaaggacaactgtcatggcggct
cgaagatgtctgatttttaagaatgttttatcagtcttatttttaaaaag
ttctctagctctttctttttgtacatttgcagaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_105:360121..367955-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046048 ID=TCONS_00046048|Name=TCONS_00046048|organism=Clytia hemisphaerica|type=transcript|length=7835bp|location=Sequence derived from alignment at scaffold_105:360121..367955- (Clytia hemisphaerica)
TTTCNAGTCAATCAGTTTCAGCAAAACGTCCAGAGTAAGTGTGTTTTCCT
TGCAGCAAATATTTCTTTCTTTTAAGCAAACAGATCAAATATTTGAGCTA
TTTGCCATCAGAAAGCAGAATAAGCTACCGTAAATTTCTATCGAATTTCT
CCCTTTCGATGGTTGCATTTAACTCTTGTTCTCCATGTTGCGCAGCTTTT
TAAAGTCTAACTCATCTTTTACGGACTCTTCCCTTTGAAAGGGAACGTTG
AATGAAAAATGGGTTTTCAAAGATTTTTTAAGGAACTCTTTTAATTTCTG
TTTTCTACAGTGGCACTCCCTGTCCACCGTTCAAGATTGTCATTTTAGAT
GAGGCTGACTCTATGACCAAACATGCGCAGGTAAAAATGCAGTTTCTTCT
TCTTATGAAATATACCTTTTGGCACACATTAACAATAACATTACTCTTTG
GTTGTTAGTGGGTGGCATTGTAATCGTAATTTGGCCCGAACTTTTAAAAG
GATTCTTTGAAAAAAATTAATTTACCGTTCCAAATTAGATCTCTCACTAA
CCTTTTTGTAATCTTTCAAGGATATATTGTTTTTAATCCTTCGTGCTGAG
CCCTTTATGAAAAATATCATAAATTTAGTCCTTATTTCTAATCAAAATAA
TCAACAAATAAATGCTAATGAGAGAGAAATATCTAGCCCTGTTGTATATG
AGGGTTGTGAAGCTACCCAGACTTCACCTCGATTCACAAATTTCAAACAA
AAAGCGAGGCTCTATGTATATCCTAATTTTCTGTCCTGCACTGAGATCTT
TTCAATTAATGAACTGCTTCTTTTGTAGGCAGCCTTGAGACGGACAATGG
AAAAACAGACGAAAACAACTCGTTTCTGTCTCATCTGTAATTACGTCAGC
AGGTTAACAGCGACTCTTTTTTTGAAAATACAGACAAAGAAATAGAGAAA
ATTTTATTTTTGTTATCAATCGTATGGAGAGATTTTTCCTAAGCTAAGGT
ATTTCTCTTAGCTGAACCAATCAATTTCTAGTTTCACGAGTCTAACAGCA
CTGTTTAGGAAAATCTCGCTATTATCACTCTTGCATTTTTATCACAATTC
AGAAATCAATCCTAACTTGCTCTTCTTTCCTATACATTTATTAGTGCTAA
TTACTTTACTTTTTATTAAATATTTTGAATGAAGTGTCCCCGCCATTTCT
ATGAGAGGATAGTTAGTGGACAACCTTTTTCACGAAATGGTCTTTTCTTT
ATTTATTTAGAATCATCGAACCAATAACTTCTAGGTGTGCAAAGTTTCGT
TTCAAACCTTTATCGATTGACACGATCACAGAACGATTAGCAATGATCTC
CAAAGGGGAGAACGTCAAAATCAATAACTCAGTACGTATTTAGTACCTCA
TTCAAATATTTACTTTTACAAGGGGTGAATTTCCCTTGAACATTTAACCA
TTTTATCCATTTAACTATTCTGGTTATAAAACCGGGTCAAATTATTCAAA
TTAAAGACGTTCATTGTATTTTTAAATGCATTTCTTGAAACTTTATCTCC
CCAGATAAGTATAGATCTTTTCTGCAAAAACCCACTTTATTTTACTTTCA
GGCCATCGATACTTTAATAAAAGCTGCAGAAGGCGACATGAGAAAGGTCA
GTATGCCTACCTTCTCTATTCTGAAAACTGAAAGGAACCTTGTGTAGGGA
AAATCACTAAAACACGATTAAATAGCTTAAGACAAGAAATAGAGCTTTTA
ATGATATGCACCATTGCAATGTCTTCCACAGACCCAACAGCTGATTGGTT
GAAAGTGACGTATTGACCGATTTTACGTCACTTACAACCAATCAGCTATT
GGGTCCGTGATGTAATGTTAGAAGACATCATTTAACGTATCTCCTACCAT
TTTGCTTACACAGCATTTTTCAAATGAAAGAAAACAACTTTTTCTCCCCT
CCCAAGGCCCACGACCACAAATGTCGAGAGATTATCTTGATAAATCTGCT
TTGTCAGAACAAGGGGCGCGCCTCCTTTCTATATCATATCATACAGGGTG
TCCCGAAAAAAAGTATCGAGTTCGAACATGATTCTGAGTAGAAGGTTATG
TTGCGTGTGTTTAACAAAGTGTAAGAAAATATATACCAACAAAATAATTG
TTTTTATGATTAAAAATAATTAACTTTCTTTACAATTTTCATGACATTAA
AGTGATTGAGAATTGTTTTTTGTAAAAGTTATCCGTAAAAGTATCCCATG
ACAATTAATATGATACAGAGAGAAACTTTGATAAACATTGCAAATTTAGT
GAAACACACACACAAGAACTTTCTTTATATAGACGTGGTAAGACTCGGTA
CTTTTTCTCGGGACACCCTGTAGAAAGAACATTTTTAATGAGTGTCTAAT
TTATAAAAAAATGATTGTTTTTTTGTCTTCAGGCTATCACGTTTTTACAG
AGTGCGCACAGGCTGAAAGCAGGCGAAGAGGAAATCACGTCTAATGACAT
CGTTGAAATGGCTGGAGTAAGAAATTATTATATATGTATTATGTTATAAC
CTATTTTTCAGGTCTTTGGTGCCTAAAGAGAGCTTTTTCAATAAAATCGT
AAGTGACTGTTTAAAATATCGATGTTCTAGAGGTGTATAGACATGAAAAG
AGCTCGATATTCAGGGGTTATTCACAAGATAAGGTCATTTTTGTGGTATG
GCTATTTAGACGGTCAATCTTCAAAGATTTGGATTCCCAGGGGATAATAT
AGTTTCAGAAAAAACGACGAAATTCGAACATTATTGAGGATGAGGCAATT
GAATCAGATCTATAATTCATATTTCCAACACAGCCATGCAATCTCTTCCC
TGGAGACCACAACATCTGATCGTTCTTTTTTGTTAACAGATAATCCCTGC
CGAAATAATCGAATCGCTCACTCAAACTTTTTCATCTGGATCTTTCGATA
AATTGGATGCTAAAATAAAGGTAACTGTAGCCCTAATTTTTTATTTTATT
TGTTCTTTATTATCGTTTGTAATAAAAAATAGTACTAATCAAATCCAAAA
TGACATTGGAATATTTACTATATGGTAAATAATAATTATAAAATTTAAAA
ACACTAGAACAGAGTCTGCATGAACAATAGATTTTAGCCTCGGTGATTTT
GTTTTTAAACTCATCTAAATAGTCAATAGTCTTAAATTTTTATGGTAAAT
AAAAGGAATTCAAGCAATTTGTAGGGTTGCAAACTGTAAGGTTTTCTTGA
AATATTAAATCAGAGGGATGCTGGCAACCTGCCCATTGGAACCGAATGTC
CTAAGTACTGACCTACGTTCGGAACTCTGACAGCAAAGTTATTCCTTGAT
GACTTGTGAGACGATCAATAAATAAATAGAGTAGATTTTTTAAGTGGATA
GCCCCAGTAATCTAGGAGTCTTAGGCCGTTTTTCGATTGTTTTCACGGGG
GTTCACGTCCAGCCGACTCGGCTATCTATGAACGGAACATTGGAAAGAGC
GTTGATTCGAACTACGAACCCCTTGGTTTAAAGCACAGACGCCTTGACCT
TCGGTCACCACTCCTTATGCACAACCCATCCGGTACGTAGTCACCTTTCA
TCCATAACTAAACGACAACATTATCTTTTGTTCTGCAGGAGATCATGATG
AATGGATATTCGGGATCACAGCTTGTCACACAGGTTTCTTCTTTCGCTTT
TCACAGATTCTTTTTTGGGAGAGAAGGTCTATGATTATTTATTTCGCATA
GTGTCGGGGAAAGGGCATGTCATCAATTCTTATTCCTTATCAAAACTTAG
TCGACCTTAATTTTAGTCACCTCGTCAAAATTTAGTCACTAAGGGTCGAC
TAATAATTAAAAAGACCGACTAAAAATTTGGGCCATTTCTAAATTTACAA
GCAGATGAAAATAGGAGAAAGCTTAAAATACTGGAAAATAAGGAAAGCTT
AATTGTAAACTTTTAATTCGGCCCAAATGTTTAGTCGGCCCATATTTTTA
GTCGGCCCATATTTTTAATCGGCCCTAATTTTAGTCACCAAGCCAAAATT
TAGTCACTTAGGGCCAACTAAGATTTGGACCTTATCGGCCATATTTTTAG
CCTTTCAAAATGGCAATCTAATCGCTTTTAGATGTCGATGTGTATAGATG
TCACTTTCGTTTCACTTTTCAAACATCACATTTTTCCACAAAGCATTTTT
TTTTCACGTAGTCTACATTTTATGAATTTTCCAAAAAATCAATTTTTATA
TAATTAAGCTTTATTATAATTAAGCTTTCCGAAGCGCTGCAATTGTATCG
TGCACTCTTTAAATGTTTGCTAAGCACTTCATATTGATTGTCTATACTTT
GAAAGAATCCTCAAGATTTACTCTTAGGTTCCAAATAAACGCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCCCCCGTTTATTTGGAACCTAAGAGTACAAACATTTTACAGAATAT
GATTAAGAATGACATCTTTGTTCGTTAGATACACGACAGCTTGGTGGAAA
GTGAAGTGTTGAATGACAACCAGAAAGCTGTCATCATGGAGAAGCTATCG
GTAAGATGTCATTGCATTAAACACTCTCCAGACAGTCGATTCTGCCAACA
ACATACCCAACCCATACCCTGCCTGTACCATACCTTACTCGTACTGCTTT
TGCGTTCCATGTGTGATAGAAATTAAAATAAATTGGATTTTCTTTTTCTG
CCAAAATGCTTGCTACTTGAAATGGAATCAAATTTCGAAAATCTTGTGAA
GAGTATATTCACAACACTCTCACATTGTAAATCGGAGTAATTTTCCGGAA
ATCAAGTCTCACTTTTCTGGTAATCTTTGCCTTTTTCACGAAATTTTGCG
AAACTATGCTGTAAATACACTTGACCTTTTCAGCTGATTTTTTGCTTGTT
CGCGAAATTAAGTCTATGCGATTAAGTCCAATCTTTCTAATTTTTATGAT
GGCGATGGCTTCAGTAACGTTTTTGGTGGCCAGGAGAGACCTGTGTTTCC
GGAAACCGGCCGTGTAAAAAAAATAAATTGTCTGACCCGGCCGCAGACTA
TGGGTTCATCTATATGGTTCATCATAAAGAAAATCAGGTTGACCGTTCAA
GCTATCAAACGTCGTTTGGTTAGACATTCCCGCTTGTAAATCAAGTTTTG
TTTGTTAGTAGTTGATACATTGTATTCAGGGCTTACTTCATACTGTTTGT
AAATAAAAGTTATCTTTAAAGTTCTATTTCAATGATTTTAAGTTATCAAA
AATAGCAACAAAAAAAAATTTTCCGACCGGCCGCATGAGAGCTTTTTTCC
TACACCCGCATTCCGGAAACACTACATTTTTTTATTTTCGCCTGAGTTGG
CCAAAAAATCTGCCTCTGACTCTTTTCCGTAATACTGCAAAACAAATAGT
ACATTTTTTTGGACCTACCCCGTTGGGGTAGAGGTCCTATAAATTAACCG
ATGACCGTCCGTCTGTTGCCAGCTTTTCTCAGGATTGGCTCATTATCTTT
TTCTGATTTTTTGCACAATAATGCAAAATGGCAATGCCTAAAATGTGACG
GAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAAC
TCCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTT
TTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGG
CTGAAGTGGTTTTTCCCGGAAAATTCTTGTTCGCCTTAAAAAACGGATTT
TCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTC
TCAATGTTGACTCATTATTTCTTTCTGATTTTTTGCACAATGATACAAAA
TGGCAATGCCTAAAATGTGACGGAGCCCGATTTTCGAAAAACATTTTTTT
CCGGCCGGAAATATGCCGGAAATCGCCGTTTTCTGGATTTTTATAATTGG
TTGTTTTTTCATTCAAAAACATTATTAATAGCAATGCCCACCATCAAGCA
TGTTTCAATTTTCAAAAAAATTGATTTTTGAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCCGGAAAGACAG
TATTTCTTGAATTTCTCGAGCTGTACTTAATATTTTTTTATGAAATTTTG
AGCACTGATGAAAGATGAACCGGAACTTTCTATTTCTATTTTCCCTACTC
CCCTTACCTCTTCCCCCATCAACAATCAATGATAAAATTTAATGTGTTAA
TGCATTTTCGCAAAACGCTATATCATCTGACTGATTGTTTTCATTTTTCT
CCTTATTGCCTTATTATCTAGCTTTCATCATCAGGTAGGTCCATTCAGCA
TGTTGCTTGTTATTTTTGCCTCAGTACTCTAGTGATAATTGAATTTTAAG
AATTTCATTGTTTGGCTTCTAGGTTGTCGATAAATGTTTATGTGATGGGG
CAGACGAATACCTTCAGATTATGGCCGCTGCGGCTGTTATTATGGAACAA
TTCAATAAACAGTAGGACTCAGGTATTGGATTGGCTTCAAAGACTACAAT
CATAAATTTGTTGGATTTGGCATGCGAGCATTACTCGACGAATAAAATGA
TAATTGGATAGCTTGTATTCAAGTATTCCAATGTGAAAATGAGACAGATA
TGAACTTAAGGAAGCCCGTTAAACTGTTGAGAGGAAATGGATTTGATAGC
TTTTTTTCATGATCACGGGAAAACTGAAAAAAATGTAAATATGAGTTCGT
TAATAAGCCATTATCGTTTACTTGTTATACGACAGAAACTTGACTACGAT
ATTTATACTTCATAAAGATGGGCTCTTTCCGAAAATGTTCGTACATTGGG
GTGGAGGATATAGTGTCCGGGGGTGGTGAAAAATCGATAAAATTAGCCTT
GTCTGGGGGTTTTTGGGTAATTTTGAATATCCAGGGGGGGTCAACTGATG
CTTGTCCGGGGGGGTCAAAAGTCACAATATCTGGGGGTAAATATTCTCCA
CTCTATATATTCAAGAAACTGAAAAAGCCCATTTCGTTGAAAATGTAAAA
TAAAATAAAATACGGAAGAAATACTTATATTTCAAAGAGAAGATTTGACA
ACATTTGAATAATCTGGTGCTGCCCAGTTCCCTTTGTCGAATGACCAGAT
TTTCGCTTCCTCTAAAAGTTCTTTAGCAACTGCTGTCTTGAACATTTTGT
ATTTAAAGAACTCTTCCATCCCTGATTCCGAGGATTTACCTCCTTGCATA
GCTGCTCCTTGAAGTTTCGTCTGGCGGTATTTATTGAAGGGCGCTTCATT
TTGTGTGAGATATTGGACGAATGCCAAAGCGCCCTTTACCCATTCGTTAT
CATACTTCAAAAAGTGAATTCCGCATTCTTTATTCGTTGACATGAAAAGG
ACGTCTTGATCGCTATGAGGTGCCGGATCGAACAAAACTTCGATACCGAC
TTCTTTTAGTTTGGTTTTCTGTTCTTCTGTCGGGGGAACGTTTTTCATGA
ACATTGCAAGATCGATCACTGACGTGCCTGGCATATCTAAAGACAAAACA
GGATTTTTATACTGTGACATCAAAGATTTATTATACACTGGATAAACGAC
TCATAAAACGATGGAGAGCGATCATTGTATTTTCATTGTTTCAGAAAACG
ATTGATGTTCTAGCTTTGTCCGCAAAGGACAACTGTCATGGCGGCTCGAA
GATGTCTGATTTTTAAGAATGTTTTATCAGTCTTATTTTTAAAAAGTTCT
CTAGCTCTTTCTTTTTGTACATTTGCAGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029418XLOC_029418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046048-exon-scaffold_105-1575043694:367922..367955TCONS_00046048-exon-scaffold_105-1575043694:367922..367955Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:367576..367645TCONS_00046048-exon-scaffold_105-1575043694:367576..367645Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:367054..367127TCONS_00046048-exon-scaffold_105-1575043694:367054..367127Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:366575..366695TCONS_00046048-exon-scaffold_105-1575043694:366575..366695Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:366310..366354TCONS_00046048-exon-scaffold_105-1575043694:366310..366354Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:365440..365523TCONS_00046048-exon-scaffold_105-1575043694:365440..365523Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:364986..365066TCONS_00046048-exon-scaffold_105-1575043694:364986..365066Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:364273..364317TCONS_00046048-exon-scaffold_105-1575043694:364273..364317Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:363356..363427TCONS_00046048-exon-scaffold_105-1575043694:363356..363427Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1575043694:360121..361483TCONS_00046048-exon-scaffold_105-1575043694:360121..361483Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:367922..367955TCONS_00046048-exon-scaffold_105-1510915933:367922..367955Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:367576..367645TCONS_00046048-exon-scaffold_105-1510915933:367576..367645Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:367054..367127TCONS_00046048-exon-scaffold_105-1510915933:367054..367127Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:366575..366695TCONS_00046048-exon-scaffold_105-1510915933:366575..366695Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:366310..366354TCONS_00046048-exon-scaffold_105-1510915933:366310..366354Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:365440..365523TCONS_00046048-exon-scaffold_105-1510915933:365440..365523Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:364986..365066TCONS_00046048-exon-scaffold_105-1510915933:364986..365066Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:364273..364317TCONS_00046048-exon-scaffold_105-1510915933:364273..364317Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:363356..363427TCONS_00046048-exon-scaffold_105-1510915933:363356..363427Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1510915933:360121..361483TCONS_00046048-exon-scaffold_105-1510915933:360121..361483Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:367922..367955TCONS_00046048-exon-scaffold_105-1491911889:367922..367955Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:367576..367645TCONS_00046048-exon-scaffold_105-1491911889:367576..367645Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:367054..367127TCONS_00046048-exon-scaffold_105-1491911889:367054..367127Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:366575..366695TCONS_00046048-exon-scaffold_105-1491911889:366575..366695Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:366310..366354TCONS_00046048-exon-scaffold_105-1491911889:366310..366354Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:365440..365523TCONS_00046048-exon-scaffold_105-1491911889:365440..365523Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:364986..365066TCONS_00046048-exon-scaffold_105-1491911889:364986..365066Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:364273..364317TCONS_00046048-exon-scaffold_105-1491911889:364273..364317Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:363356..363427TCONS_00046048-exon-scaffold_105-1491911889:363356..363427Clytia hemisphaericaexon
TCONS_00046048-exon-scaffold_105-1491911889:360121..361483TCONS_00046048-exon-scaffold_105-1491911889:360121..361483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:360121..367955 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00046048 vs. Swiss-Prot (Human)
Match: RFC4 (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 6.383e-92
Identity = 143/234 (61.11%), Postives = 184/234 (78.63%), Query Frame = 3 
Query:   12 SVSAKRPDGTPCPPFKIVILDEADSMTKHAQAALRRTMEKQTKTTRFCLICNYVSRIIEPITSRCAKFRFKPLSIDTITERLAMISKGENVKINNSAIDTLIKAAEGDMRKAITFLQSAHRLKAGEEEITSNDIVEMAGIIPAEIIESLTQTFSSGSFDKLDAKIKEIMMNGYSGSQLVTQIHDSLVESEVLNDNQKAVIMEKLSVVDKCLCDGADEYLQIMAAAAVIMEQFNK 713
            +VS  R DG PCPPFKIVILDEADSMT  AQAALRRTMEK++KTTRFCLICNYVSRIIEP+TSRC+KFRFKPLS     +RL  I+K ENVKI++  I  L+K +EGD+RKAITFLQSA RL  G +EIT   I ++AG+IPAE I+ +     SGSFDKL+A +K+++  G++ +QLV Q+HD +VE+  L+D QK++I EKL+ VDKCL DGADE+LQ+++  A +M+Q ++
Sbjct:  130 TVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG-KEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENN-LSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQ 361
The following BLAST results are available for this feature:
BLAST of TCONS_00046048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC46.383e-9261.11Replication factor C subunit 4 OS=Homo sapiens GN=... [more]
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