TCONS_00046039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046039
Unique NameTCONS_00046039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046039 ID=TCONS_00046039|Name=TCONS_00046039|organism=Clytia hemisphaerica|type=transcript|length=1737bp
aatgatttttactttttctcattTGCAGGATGGGACAGCTTATTATCAAA
TCAAATGGAAAACATCTTGGGAAAGAGCTGATTCATTATCACAATTTGGT
GAACTGCTGGACGAGTTTTGGGCCAAAGTCAAGAAAGCCAGTACTGCTAA
TATGTTCAATAACACATCCGTCAACAGGAAAGAGCCAGCGATCGTACCCA
GGCCCAAACCCACAACTCAACAATCAAATAATACACAACAAAAGAACGCC
CCACGAACGCCAACACAAAAGAAGAGGACACCTTCAACATCTCACACGCC
ACGCACacctcaacaacaacaacaacaacaacaacaacaacaattctTCC
AGCAGTCCCAACAGATTCAGCAAATGCAATCCTTCCAACCACCGCCACAA
CAACCACCACCCGCCACACAAAGTATGGGTCAACCGTCTTCTGTCACCCT
CATCGACAGTGATGACGacgatgatgacgtcatcgcaaTCAACCCTCCTC
CATCGGGCGCCAATAACATGTCTTTCAACTCCATGaaTCTAAACAATATC
AAGTTAGAAGACTTCGACCAGAAACCACAACTGGGTTTTCCACCTCAACC
TTTCGCAGGAGGCCTCCCTCCACAACAGCAATCTTTCATGAACCCCACCA
ACGGTCGAGGAGGTGGCGGTGGCAATAGAGGACGTGGTAGTGGTGGTACA
GGTGGAAGAGGAAGAGGTCGTGGTAGAGGTTCCGGTCCCTCTCCTGCCAA
GCGGAAGTTGGGTATGCCACCTGCTGGAAGTGCTACTCCTCCTATGAAGA
TGGAACCGCAGCAAATGGGCGGCTTTGGTGgcgtgaaaaatgaaaatggt
gGATTGGCGCCCGTTACAGCACAATCGAGTTGGAAAGATCATTTTGAAGT
ATTGGAAAATTATGTGGATGGTCAAAAAGTTCACTCTTCGTACAAATGTT
TACACTGTAACGCCAAAATCGCGCAATCATCGAACTGTTCCCGCCACTTG
AAAACACATTTGACGTCAGAGGAAGCAGAGCACGAGTGTCCGATTTGTCA
GAAGAAGTTCGCGCGGTTGGATTATATCGAACGTCATTTGAAACAGCACG
GTAAAGGATCAACGGAGGAGGTCAAGAAAATGATCAAACTCGTCGCCGCC
AGTATGAAGAAATAACATGTAACAACTACCAAACTTGCTTAATTTTTTCA
TACACCAATTAATTCTGAAAccctacaatcatggacaaaatatttgagac
aaaggggatttccctgcgaaattttaaacaccacaaatgatttttttggt
aaactacagttggaaagcaGAGTTTTAACACGAGACTTAAGACTAAGGAG
GACCtcaggatctcaggatttaaaagttcaaatttgctccaaaaaggctt
ggaatatagcctagaagccaccgaacccctcaaaaatcgaaatattcaat
gaaagaaagttgaagtgctaaaatagcaattctcgcccaaactttaaatt
cagaaaaacgtgaaaattcactaaaatctcaatatatttcgacgaTGATT
GTAGATTTTTTGATTGCCAGTTCTTCCCTATATTCATCAAGTTCAATTTA
TAGCTAGTTCTAGCATGGTCTTATTAGAACTTCACAGCTTCACAGGAATT
AGCTCAAAATAAAACAGTGGATTATATTCTCGACTTAATTTGACTAAATC
TTTTCTTTGGATCAGTACGGTTATTAGAGTAAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_105:178038..183393-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046039 ID=TCONS_00046039|Name=TCONS_00046039|organism=Clytia hemisphaerica|type=transcript|length=5356bp|location=Sequence derived from alignment at scaffold_105:178038..183393- (Clytia hemisphaerica)
AATGATTTTTACTTTTTCTCATTTGCAGGATGGGACAGCTTATTATCAAA
TCAAATGGAAAACATCTTGGGAAAGAGCTGATTCATTATCACAATTTGGT
GAACTGCTGGACGAGTTTTGGGCCAAAGTCAAGAAAGCCAGTACTGCTAA
TATGTTCAATAACACATCCGTCAACAGGGTAAGTTGTTTTATGTTTGAAT
TCGAAACATTTGATATATTTGATTTAGTCCACAAGTTTGATTATAGTTTG
ACGTTTATTGCTGGCATGCCTGTATAACAAAGGTAAAATAAACCAATTAT
ACTGAATTATAACAATATTTTGTTTTCATGAAATGCTCATTCGAAATAGT
TTCATGAAAAGTGAAAAATCTTAAAAACGCCAAGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCTCTACGACAATGAATTTT
GAAATTAGCCGTAAATATTGGGTCTGTGCACTTACTAATGCCTCCTGCAA
CTCAACCAAATAGAAACAGAAAAGAATTCTCGATCAAGTAAGTTACAGTT
ACTGTAATAAGGTTAGTTCTGACTTGAATGATTTTTACTTTTTCTCATTT
GCAGGATGGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAA
GAGCTGATTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCC
AAAGTCAAGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAA
CAGGGTAAGTTGTTTTATGTTTGAATTCGAAACATTTGATATATTTGATT
TAGTCCACAAGTTTGATTATAGTTTGACGTTTATTGCTGGCATGCCTGTA
TAACAAAGGTAAAATAAACCAATTATACTGAATTATAACAATATTTTGTT
TTCATGAAATGCTCATTCGAAATAGTTTCATGAAAAGTGAAAAATCTTAA
AAACGCCAAGTGATACAGAATTTCTTTTCTAACCAACTTTCATGTAAAGT
GAATGATCTTAAAAAAAAAGCCAAGTAGCATTTTTTTTCTAACCAACTTT
CTTGTTTGCTTTCTTTAGAAAGAGCCAGCGATCGTACCCAGGCCCAAACC
CACAACTCAACAATCAAATAATACACAACAAAAGAACGCCCCACGAACGC
CAACACAAAAGAAGAGGACACCTTCAACATCTCACACGCCACGCACACCT
CAACAACAACAACAACAACAACAACAACAACAATTCTTCCAGCAGTCCCA
ACAGATTCAGGTACGGTAGTATTATGTAGATCATGCTACGATACGCACAG
GGCTTCAATCAACAAACAGATCAAATGAGAGCTTTAAACTTTCCGCCTAT
CCATAAATTATTTTGTGAACCCGTTTTTAATACAATACTCGGTGCTCTGT
AATAAGTAGCAAGACTTCCTTCTGGTAGATAGCTATCTCATATTTAATAA
TGCTATGACTCATAAGATATTTTCCTCTTTTTTTCCACACACCAGCAAAT
GCAATCCTTCCAACCACCGCCACAACAACCACCACCCGCCACACAAAGTA
TGGGTCAACCGTCTTCTGTCACCCTCATCGACAGTGATGACGACGATGAT
GACGTCATCGCAATCAACCCTCCTCCATCGGGCGCCAATAACATGTCTTT
CAACTCCATGGTAAGAAATATCTTTCATTCGTTGTACTCAAGCTTGAAAA
ACGTCTGCTGATGATCGCACTTCAATTTATAAATACACCTGAATACACCG
CAAACTTTGTTGAGAAGAAGGTAATCAGTGTTTTAGTTAAACTTATTGCG
TCCACATTTTAGACACTTTTACCCTTTTTCTTTCTTTCAGAATCTAAACA
ATATCAAGTTAGAAGACTTCGACCAGAAACCACAACTGGGTTTTCCACCT
CAACCTTTCGCAGGAGGCCTCCCTCCACAACAGCAATCTTTCATGAACCC
CACCAACGGTCGAGGAGGTGGCGGTGGCAATAGAGGACGTGGTAGTGGTG
GTACAGGTGGAAGAGGAAGAGGTCGTGGTAGAGGTTCCGGTCCCTCTCCT
GCCAAGCGGAAGTTGGGTATGCCACCTGCTGGAAGTGCTACTCCTCCTAT
GAAGATGGAACCGGTGAGTAAAGCCTCTTTTCTTCTTTCATCATTTTAAG
TTCCCTTTTATAGTTAATAAACTAAATATAAGCTTGATGTTTCTTTGTTT
TCGAAAGAAGTTTTGTTTATGTTTTCGAGGCAAAATCGATTAGCATTTGA
AATTTTAGTCCCTTTATGGCGCACTTGGACTTTCATTACAAAAAGCACCA
CCCGTCACAAGCAACAAAACCGATTATCTTCTTCTCTCTGTTTCGTTGTA
GGGTGCGTCTCCCATCAAACACGAAAGTTCAAGTGCGTCATCGTCTTCAG
TTTCCGGCTCGTGGGAATCGAACTTTGAAATTATCGAGAAACGAAATTTT
GACGGGTCCGTTAGTGAAACAAACTATCGGTGAGGTTGTGTGTTTTTACG
AAACAGTGATTGGATGAAGGTGATGAAGAGTGATGTTAGAGGATGAAAAA
AAATTTTGGATTTTTTTTTAATCGAAAAGAGCTGGTTGGTTAACTGTTTT
AAAAGAATTCCTGGAGGAAATCCAGTCTTTGTGTTGAGATATCTTCTACC
TTTACACCTTCATTCAACCGCTGTTTATTTTGATTACAATTGTTTTGATA
TTACATTCCTTCTTTCCTTCGCGTGGCGGCTTTAGCAGCAAATGGGCGGC
TTTGGTGGCGTGAAAAATGAAAATGGTGGATTGGCGCCCGTTACAGCACA
ATCGAGTTGGAAAGATCATTTTGAAGTATTGGAAAATTATGTGGATGGTC
AAAAAGTTCACTCTTCGTACAAGTGAGTGGATTTCTTCTTCTTCTTCTTC
TTCTTTACGTTTTACTTTTCGAAGTTCTTAGCATAGGAGCTAGGCATTGT
TATTTTTTTGAGTTAGTTATTCATTTAAGTTATTCAATTACAGAGGCAAT
TGGCTAGTCCAGTTTAGCCGCTCCCTTTTGAGTGCAGGCTAGTGACGAAG
AAAGTTATTATTTTATGTTATTATTTGTGTTTTCCTTTTTGTTTCTTTCT
CGTTTGTGAAGATGCCGACTGTGCGGAACATCCATCGCCCAGCAATCCAA
CTGTGGCCGACATCTCAAACTGAAACACGGCGTCGGTGGTGGCGGCGTTG
GTGGTCTCTAAGCAAGAATGACCCCACAAACAGCCTTACCCTTCTCTTAA
ACTCTCAATCTCTCTAAGAACTTTTCTTTTCGACAGACCATTCGAAAAAG
ACGGACTCTCCGATTAAACAAAGCTTTCTCCTGCCCTTAATAAAATCAAG
CTTTTTAAATCTTTTAATTATACTGTGAAAAAATCTGATCGAAAGGTTTT
ACCAAAGAAAAGTTCTTCCACCCTCCCCGTACCCCACAAGCACGCATATT
CAACCGCCCTCCCGCCCTTCAAAAAGGCACCCATTCACGCCCATCTCCCT
CTCTTTCCGTTAAGATGTTTACACTGTAACGCCAAAATCGCGCAATCATC
GAACTGTTCCCGCCACTTGAAAACACATTTGACGTCAGAGGAAGCAGAGC
ACGAGTGTCCGATTTGTCAGAAGAAGTTCGCGCGGTTGGATTATATCGAA
CGTCATTTGAAACAGCACGGTAAAGGATCAACGGAGGAGGTCAAGAAAAT
GATCAAACTCGTCGCCGCCAGTATGAAGAAATAACATGTAACAACTACCA
AACTTGCTTAATTTTTTCATACACCAATTAATTCTGAAACCCTACAATCA
TGGACAAAATATTTGAGACAAAGGGGATTTCCCTGCGAAATTTTAAACAC
CACAAATGATTTTTTTGGTAAACTACAGTTGGAAAGCAGAGTTTTAACAC
GAGACTTAAGACTAAGGAGGACCTCAGGATCTCAGGATTTAAAAGTTCAA
ATTTGCTCCAAAAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCCTC
AAAAATCGAAATATTCAATGAAAGAAAGTTGAAGTGCTAAAATAGCAATT
CTCGCCCAAACTTTAAATTCAGAAAAACGTGAAAATTCACTAAAATCTCA
ATATATTTCGACGATGATTGTAGATTTTTTGATTGCCAGTTCTTCCCTAT
ATTCATCAAGTTCAATTTATAGCTAGTTCTAGCATGGTCTTATTAGAACT
TCACAGCTTCACAGGAATTAGCTCAAAATAAAACAGTGGATTATATTCTC
GACTTAATTTGACTAAATCTTTTCTTTGGATCAGTACGGTTATTAGAGTA
AGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029412XLOC_029412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046039-exon-scaffold_105-1575043694:183216..183393TCONS_00046039-exon-scaffold_105-1575043694:183216..183393Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1575043694:181084..181275TCONS_00046039-exon-scaffold_105-1575043694:181084..181275Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1575043694:180684..180848TCONS_00046039-exon-scaffold_105-1575043694:180684..180848Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1575043694:180231..180503TCONS_00046039-exon-scaffold_105-1575043694:180231..180503Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1575043694:179472..179608TCONS_00046039-exon-scaffold_105-1575043694:179472..179608Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1575043694:178038..178829TCONS_00046039-exon-scaffold_105-1575043694:178038..178829Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:183216..183393TCONS_00046039-exon-scaffold_105-1510915933:183216..183393Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:181084..181275TCONS_00046039-exon-scaffold_105-1510915933:181084..181275Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:180684..180848TCONS_00046039-exon-scaffold_105-1510915933:180684..180848Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:180231..180503TCONS_00046039-exon-scaffold_105-1510915933:180231..180503Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:179472..179608TCONS_00046039-exon-scaffold_105-1510915933:179472..179608Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1510915933:178038..178829TCONS_00046039-exon-scaffold_105-1510915933:178038..178829Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:183216..183393TCONS_00046039-exon-scaffold_105-1491911889:183216..183393Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:181084..181275TCONS_00046039-exon-scaffold_105-1491911889:181084..181275Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:180684..180848TCONS_00046039-exon-scaffold_105-1491911889:180684..180848Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:180231..180503TCONS_00046039-exon-scaffold_105-1491911889:180231..180503Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:179472..179608TCONS_00046039-exon-scaffold_105-1491911889:179472..179608Clytia hemisphaericaexon
TCONS_00046039-exon-scaffold_105-1491911889:178038..178829TCONS_00046039-exon-scaffold_105-1491911889:178038..178829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:178038..183393 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.23429	9.74717	14.9018	5.0855	19.8811	15.6314	12.6525	8.02034	6.51634	7.28266	1.33088	6.75325	0.139121	3.12684	4.43323	2.91605	5.41026	0	1.12934e-09	0.928034	3.54254	6.59535	13.0091	11.6882	7.45667	5.41287	1.80178	0	0.535404	4.1703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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