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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046029 ID=TCONS_00046029|Name=TCONS_00046029|organism=Clytia hemisphaerica|type=transcript|length=456bp
agaaaatttcatcgcaaaagctctattatttcaataGCTATTGACATTAG
TTTCACCGCCGAACATcaccccccccccccccctagtacgagtAAGAATA
GGGTTAAATAAGCAAAAGCCTCTggaaaatttacaaaagtatatgGCGGA
CAAAACGGTTGGTTAAACAatcaatttcaaatatttcttaatattttcGG
TATCATTACTACATCTAAATTAGAAATTGTATTGccttacaaaataaaca
ttaTATCATACACAGAAAAATATGTACGTCACATTTCGGATTTTCCACTC
AAAAAGAATATACAGTATGAAGTATCGACATCCAGTGTCGAAAAGCGGAG
CAGAAAAAGACAAACATCTACGCATAAGTAAtcctattcttgatatgcgt
aagtcaagatgacgtcatattttttaacagaAGCACTCGAAAAAACCGGA
TTTTGA Run BLAST on NCBI transcript from alignment at scaffold_105:168771..170587- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046029 ID=TCONS_00046029|Name=TCONS_00046029|organism=Clytia hemisphaerica|type=transcript|length=1817bp|location=Sequence derived from alignment at scaffold_105:168771..170587- (Clytia hemisphaerica)
AGAAAATTTCATCGCAAAAGCTCTATTATTTCAATAGCTATTGACATTAG
TTTCACCGCCGAACATCACCCCCCCCCCCCCCCTAGTACGAGTAAGAATA
GGGTTAAATAAGCAAAAGCCTCTGGAAAATTTACAAAAGTATATGGCGGA
CAAAACGGTTGGTTAAACAATCAATTTCAAATATTTCTTAATATTTTCGG
TATCATTACTACATCTAAATTAGAAATTGTATTGCCTTACAAAATAAACA
TTATATCATACACAGAAAAATATGTACGTCACATTTCGGATTTTCCACTC
AAAAAGAATATACAGTATGAAGTATCGACATCCAGTGTCGAAAAGCACTT
TTTTAGTATTCTGAAGACTTGATTTAGACATTGGGCTTTTCCAGAAAAAA
ACCGTGCACCCCCTGTTGAGGAGGTCCAACCTTTTGTGACCTACCCCCTT
GAAATTCCAGGCAATTTTAGGGATCATACCCCTCTGGAATTCCGAATTTT
TACAAATTTTCGATCATTACCCCCTTGGAATTCCGCTTATTTTCGACGGA
TTTTCGTCTACCCTTATGGAATTCCACTGCATTTCAAACCTTACCCCCTT
GGAACGGAAATGGACCTCCTCAACAGGGGGTGCACGATTTTTTTCTAGAA
AAGCCCATTCTCTACGCTGGAGAGAGCAGATAAACTCGATAATCCAAATT
TATCTGGTCGCAGTAGCTATTTCTGATCGACGTTTAGAAACTCCCAGTCG
AAAAGCGAGACATTATTTGCTTAAGATCCTAAAATCGTGCAAATTTTCAC
AAAGTAAAATATATAATTTTAAAAGAGATCCTTAAATAAGCAAAAGCCTT
TGAAAAATTTACAAAAAGCATATGGCGAACAAAACGGTTAGTTAAACCAA
CGGATTAGAATAGGTGGATTAAGAACTCATAGAAAACACTCCTCGTTAGG
TTATCAAACTTTTTTTACGAGTTTGCTAGCAATTAAAACTTGATAAGTTG
TAAAAAAGTTGTAAAAAATCATTACTTTCAACATTTTCATTGGTCATTAC
GTATCACGTGGTACATTTTAAATAAGAAAATGCACTTTTTTAGCCCTTTC
TATCCAATGCAGAAATTAGCCAAATAATTTGAAATTTATTTTCCTAATTC
TAAATACAGTCTTCTTTCACCAGTATGCAACCCATTCGTGACCCATCGAT
AGTTTCTTAGTTATAGACCATACGTTAATTTTCACTTATCTGAAGATTGC
CATTGACAAAAGATTAAAAATTTACATTAAAACTGGTCTAGCGTTTGTTG
ATGCTAAAACTTAAGTGCAGGATTTAAAATATTTGCAAAATCATCAAAAT
TGATCGAATCATAGGACAAATTCGTTTTCGAAACTGTATAAATTGGAAAA
TTGTTCTTATAAAAACAATGAAAAAACTAAACGAGGAGTGCGCAGGGTCA
TTTACAGATTTTTCTTGTAACAATGAGAAGACAATGGATCTCTCATGGGA
GCAACGAGAGAAGTTAATCCACCTATTCTAATCCGTTGGTTAAACAATCA
ATTTCAAATATTTCTTAATATTTTTGGTATCATTACTAAAACTGAATTAG
AAATTGTATTGCCTTACAAAATAATAACATTATATCATACACAGAAAAAT
ATGTACGGCACATTTCGGATATAAAGTATAAAGTATCGACATCCAGTGTC
GAAAAGCGGAGCAGAAAAAGACAAACATCTACGCATAAGTAATCCTATTC
TTGATATGCGTAAGTCAAGATGACGTCATATTTTTTAACAGAAGCACTCG
AAAAAACCGGATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046029-exon-scaffold_105-1575043694:170259..170587 | TCONS_00046029-exon-scaffold_105-1575043694:170259..170587 | Clytia hemisphaerica | exon |
| TCONS_00046029-exon-scaffold_105-1575043694:168771..168897 | TCONS_00046029-exon-scaffold_105-1575043694:168771..168897 | Clytia hemisphaerica | exon |
| TCONS_00046029-exon-scaffold_105-1510915933:170259..170587 | TCONS_00046029-exon-scaffold_105-1510915933:170259..170587 | Clytia hemisphaerica | exon |
| TCONS_00046029-exon-scaffold_105-1510915933:168771..168897 | TCONS_00046029-exon-scaffold_105-1510915933:168771..168897 | Clytia hemisphaerica | exon |
| TCONS_00046029-exon-scaffold_105-1491911889:170259..170587 | TCONS_00046029-exon-scaffold_105-1491911889:170259..170587 | Clytia hemisphaerica | exon |
| TCONS_00046029-exon-scaffold_105-1491911889:168771..168897 | TCONS_00046029-exon-scaffold_105-1491911889:168771..168897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:168771..170587 - |
Blast
The following BLAST results are available for this feature:
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