TCONS_00045940 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045940
Unique Name	TCONS_00045940
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3672

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_104:145413..161589+

transcript sequence

>TCONS_00045940 ID=TCONS_00045940|Name=TCONS_00045940|organism=Clytia hemisphaerica|type=transcript|length=3672bp
CTTGCTTTAAATAATGGGTCTTTTGTTTAGAAATTATTAAAAGAAACATA
AAAGTAAATGAACATTTTTCCTCCTCGTGATCTGAGGAAAGAATGgaatt
tcatttgaaatggaGAGTGAATATTTAGCAGACCCTAGGGAAGATGTTGT
GAATTCAAATACAGTTGATGATAATTCAAACGGTCTTCCTCAAAATGGAG
AAAAGGAACAGAAAAATGCAATTGATGAAGAGAAGAAAGAGGAATTAGAT
GAAAAGATACGCAAAACTTCAGATTCCATTTATTCACTCAAACATACACC
AGTTTTGTCAATTGCACACATCCTTCAACAGAAATATATTTATTTGAATG
GATGTTTGGACAAAGAGCAGCATCCTATTCTGATATGCTCATTCAACAGG
TCTCTTGGTTCTCTTGATCAAGATGATTTCAAATCTACTGTCAactattt
caaagaaatttccagtgtTCTCTGGGAGAGGTGCAAATTCTTGGTTATCA
TTGATAGACAACATGGGAAATGGAACAGTGTTAAGTCCATTCTATCTAAT
TTGCAGGTATTTGATGCTgatgaaatcttcaaaattcttCTCCTTAAACC
TCAAGGATTTTTACAAAGACATTTTGGCAATAGTGATGTGAAACAAATCA
AAGAGCTCTCTAAACATGAGTTGGTTTTTCTGGATAATCCTACAATGCTA
GAAGACTATGTGGAGTTAGCATGTCTTCCTGATGAATTTGGTGGTTTTGA
TAGTTTCAATGTCAATGAATGGGTGGAGTATACTACAGCAGTTGAAAGAT
TCCAACAGACCTGCATTAAAATTCGCAACAGAGTCAAAGAATTTCGAACT
TTGTTTGGCAGTCGTGTACCTTTATGCTCAGTGACCGAGATTGAACAACA
AgcaaaacaacaaagacaaatgGTTACCGACATTCAGGAAGACATTAAGT
GCGCCAGTGAAATTGCCGAAACACTTGCGCCTATCGTTGATAAACCTTTA
AGTCACTCCAGAAAAGGACCAAGTGCTTTAGAACGTTACAATTCGGCGCA
ACTGAAAGCATATACTGAATGTTTGTCAAAGTACCATGATGAGATTGAGG
CGTTGTGGCAAAAACAAGCTAATTTTCATGAGCAATCTAAAGAATTGTGT
GGCTTCGAAGAAAGCTTTGGACAGATTTCGATCAAACTGATGCAGATAAC
AAGTATTCTGGATGGACGTACCGACATTGGGGATAGCTTGTCATCTGCTA
ACGAACTGATGTATGAATTGGACGACTTTGAATTAAAACGAAAAGAGCCT
TACAACGAGATGATGAAACTGAAAGAGAAAGGAATGCAAATGGTGGCCTT
CTTCGGTGAATTTGCCAAAGAAAGTGTCGTTGTACGGTGCAACGAGATCA
AACATTtgttgaaagattttgaaatcaaattgGAAGCTCGAAAACAACTT
CTTCAAGTTTCTCTTGACGTGTTCACTTGCTTGGATCAGATTGAGAAATG
GTGTCAAGTTGGTGTGGAGCTGCTAGCAAGTCAGCCTGTGGAAGCTTTCA
ACCAAGAAGAAGCAGCTAAAAAATGTTACGAAGATATCCAAAACTTCATG
AAAAACAAATCTGGTATCTCCATGAACAGAATacgaaaattaaaagaatt
atgTCAGAAGTTAGGTAATCCCAGTATTGATGAAAGATGTGAGAATTCGT
TCAAGCGGATTCAAGAGGTCACTGAAATGTTGGAGAAAAGAGAGGCAAGT
TTGAAGAAAGTGGCGTTAAAACCAAAACGCCCTGTTCAAAGGGTGGAGGC
TATCGTCATCAATAAAGACTAtgatttacagaaagaaaaagGTAGCCAAT
CACCGAAGATCCCACAAACGCCCATTATCACCACGCCCACGGGCGGCGTG
ACAAAGGAGAGTATTGAAGTGGTGGTCACAGATGACATAGAGAAATACAA
ACGAAATAAAACATTCAGAAAATCATTGAGGTTGTCTTTCAAGAGACCCG
TATCTTCACCTGCTCAGTTGCAATTAGCCGAGTACGAAGAGGACCCAGAA
CATCGAAAGAAAATCCGTTTCATCGTTGCTGAGCTTTGTGAAACTGAAAT
CATTTACGTCAAGGATTTGAAGGAAATTATAGAGGGTTATTTTGCGATGT
TCGACAATCCTTCTTTCAACGTACCTGAACAATTTCGAAGTCAAAAAGCC
GTCATCTTTGGAAACATTgatgaaatttatattttccaCAGCGAAATATT
TCTGGAAGATTTGAAGGCTTGCAAAGATGCACCTTACATGGCTGGTCATT
GTTTTCTAGATAAAAAAGAAGAGTTCCAGTTCTACGCGACATACTGTAAA
AACAAACCCAAATCCGAATTGTTGCGAAACGAACTTCACAAAACCACCTT
TTTACAGGCCATACAGAAACAGCTTGGACATCCTTTAAATTTGGATTCGT
ATCTTTTGAAACCGGTTCAACGAATCACCAAGTATAAACTCCTACTCaca
gaaatgttgaaatatgtCAGCAAGAAGAATCCAGCTTATTCCGATATCTT
GGAAGCACTAGTTTGCATGAAACGCGTTCTGAGGAACGTTAATGACGTCA
TGCATTCGTCCGGATTGACAGGCTTCCCGAAAAATTTGGATGAGCAAGGA
AAGTTATTACTGCAAGACTCATTCACTGTTTGGGAAGGCAAGAAAAGCAC
TACATTGAAGCAACTCACCAAACTGGGTGCAAAACATCGACAAGTATTTT
TGTTCGAGAAATGTTTGATCTTTTCTAAGAAGGAAGTGGAGAACGGACGA
GATCTGGGAACGTATCAATATAAAGGTCATATTTGGACAGCAGATATTGG
CGTTACCGAATCAGTTCGAGGTGATGCAAACAGATTTGAAGTCTGGAGTA
AAATTGTTGTATACACACTACAGGCGAACAATACAGACATGAAGACTAAC
TGGTTATCAGAAATTCGCAAAATCTTAATGTCTCAGTTCGAGGGAGCAAA
AGGTAATAGAGAAATATTCATCTCTTTCTATGAGCTGAATTGTTATATTA
TTTCAGCGTAGTAGCGAAAAATTTTGACTGGTAGAAAGTCCATTAAATAT
GGTTAAAATACTCTGCTTTGAACACCATTCTACTCATGAGCTTTGTTGTG
TTTTAAGGAAAAATATACATCCAATTGATTGACCCCCTGTCACCACACTA
CTGTCAGTAAATTAATGAAGGAGTCACTGCAGAAGGAGTCACTGCCCCCA
CTGCCCTCAAGTGGTCGTTTTTTTGAGGCGTTGAAATGGCAAGAGTCACT
TGAAATTTGCCTCTTTGCTTTTTTACTTCCTATGATTTGCAGTTTTATCC
CAAAATTTTTGTGCTCGCTTCACTTGCGTCATTGTTCCAAGATTTTTCTC
AATATCGGGGtgccaaaatagaaaaagatcCGAGTAGTTCTTCAACCTTA
AAAATTTCTACGTTTTCATCTCTAGAAACACTGACCCAAAAGCTTTCTTC
AGATATCTATAAAAGCGACGACGTCAAACAACAATTACGACAAAAACTGA
AATTTCTCGatccTTCCTTACGAGCTTCCACACCTGTGCTCAACCTCAAT
CCTTCAGATATTGGTGATCGTCCACGCATGAATACGTTTGGCGAATGCTc
gcctaaaaaagaaaaacttcgc

Run BLAST on NCBI

transcript from alignment at scaffold_104:145413..161589+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045940 ID=TCONS_00045940|Name=TCONS_00045940|organism=Clytia hemisphaerica|type=transcript|length=16177bp|location=Sequence derived from alignment at scaffold_104:145413..161589+ (Clytia hemisphaerica)
CTTGCTTTAAATAATGGGTCTTTTGTTTAGAAATTATTAAAAGAAACATA
AAAGTAAATGAACATTTTTCCTCCTCGTGATCTGAGGAAAGAATGgaatt
tcatttgaaatggaGAGTGAATATTTAGCAGACCCTAGGGAAGATGTTGT
GAATTCAAATACAGTTGATGATAATTCAAACGGTCTTCCTCAAAATGGAG
AAAAGGAACAGAAAAATGCAATTGATGAAGAGAAGAAAGAGGAATTAGAT
GAAAAGATACGCAAAACTTCAGGTAGTTAGCAATcttattgaaacaaaaa
atgtttaatcTTATGACAGAAGTTTTTACATAAAGGAAATCATTGATcgg
aaaaaaaaagttatttcttGCAAAATGCATGAATTTTGTCTCAGACAGAT
CTTAGTACTGAGCAAATTTCTGTCTCGACAATGTATAATAAAGTATTCTA
ACAATTCACTAACATTACAGTAGGTAAAATTTGATGGATCTTGGCTCATT
TTATGtcatatttttcatcaaaaggcTAAATAAATTATGTTTATATATTG
AAAGCTTTGTTTGACCACTGGAAATTTACTAATGTACAAAAGTTGCATCA
CTTGTTGTAATATTTGATGTTACAGTGTTGTTATAGTAGTTTTTGTTCGT
TATTTTGTTGTAAAAAGACATTGAAAGGTTTTAGTTTTAAATCAatttga
taaattattttttttggatggGGTTAGTATTTAAGTTATTTATCCTCTCT
TCTTTTTCAGATTCCATTTATTCACTCAAACATACACCAGTTTTGTCAAT
TGCACACATCCTTCAACAGAAATATATTTATTTGAATGGTTTGTTtatat
tcatcattttttggaaaactgagttatgaccataccgatgctttacatcc
cattttttatcgatttttatgcttaaatccatcaaaaaccaaccttaagt
ggcctaattttaagcttttagaaGAATACAAGAATTCtacttttcacttt
attttcagggtaaaaaagccttaagtcaCATCAGTTTAGGGCAAAAAGGC
TCAGAGTGGAAACAATTTTGGACTAAAGTcttttttaacacaaaaatatt
tcaaatgttaaTGGTTTTTCAGGATTTAAGGAGAAATGATTTAAAGTCGA
TTTTCTCTGTTTGGTTTTATATATAAATACCTTCATTGTTTCTTATTTAG
GATGTTTGGACAAAGAGCAGCATCCTATTCTGATATGCTCATTCAACAGG
TCTCTTGGTTCTCTTGATCAAGATGATTTCAAATCTACTGTCAactattt
caaagaaatttccaggtatttttttatattgagtTTGACCTGGTTTGACT
CTTCCTAATTTTTTTGCCTTAGAATTAGGTTTTTGCGGAAAAggtctttt
ttgagaaagatgaCTTGGaacttttctcattttttggaccaccTTGGATT
TTTCACCTTGTTTGACTGACCACTCTGGATTTTCCAACTCATCGGTCTTA
CTTACCACCCATGGATTTTTTCATTCGAAAAAAGAGACCGCCCTGGAcat
cacacctcctcaacatagggggtacaaacTATTTCTGGAATTGCTTATCT
CTCTCTCATTTTAAGTTGTTGTTTAAAAGTCGTAAATAAATCAgtgttaa
tattttttattgtttggcGATCTTCTGTTTTTCACAACATCAACAGCTTG
GTTTTAGGTGGCATTTTTTTGTCGATAGCTTATCCAATGTTTCATAGGGA
TCCAAGCTTCTTATCAGTACAGATAATGTGTTGGATGATATCTTGGGTAT
TTAACAATAATACTCTTTCTTTTGTTCGATTTCATAATAAAGCCTATTTT
TATAGTTTATGTTTTATACAAAATCTCTAAATACAATcatcctaaaaatg
aaaaaaataactttctgTTTACTTATATACtctaatgaatttattttttt
agtgtTCTCTGGGAGAGGTGCAAATTCTTGGTTATCATTGATAGACAACA
TGGGAAATGGAACAGTGTTAAGTCCATTCTATCTAATTTGCAGGTactga
ttttcttcttttgttgtaTATTTCATACAAGTTTAAACTGTGTGgttttt
ctgacatttttgtTTTAACATGCTTAaaccaaaaagtttttaaatcaTTG
AAAATAGAGAAGGTTAAAGAGCTTTCACTTAAagatttttaatcaataaa
aagGTTATCCATTTTCTCTTGAAACTCTTGTATCTGAGGATAAATATTTC
ATAAGGAAGAAGAAGTTGCAGCAtatgtttctttctttttttaccaAGGT
ATTTGATGCTgatgaaatcttcaaaattcttCTCCTTAAACCTCAAGGAT
TTTTACAAAGACATTTTGGCAATAGTGATGTGAAACAAATCAAAGAGCTC
TCTAAACATGAGGTACAAAACGACTGgtcaaatttttaaatcttcattCT
AATTCTATTACAACACTATTTATCACTGCTAATTTAGAGCATTTTCATCC
AAAACCCTAGCCTTTTTTATAGATTGGATGGCatgattaagtggcccggt
agttcTCAATTTTGAGCCTTTACTTAGATGAATAACGGTTATGCAATTCT
gttattttcaaatgaaaattttagattgACTCGAGTTTTTTcaggaattg
ttttttttcatatacGTTTACATTTATTTTAGTTGGTTTTTCTGGATAAT
CCTACAATGCTAGAAGACTATGTGGAGTTAGCATGTCTTCCTGATGAATT
TGGTGGTTTTGATAGTTTCAATGTCAATGAATGGGTGGAGTATACTACAG
TAAGTCCATGGTTTCTGCNCAACGCCAAGATAATGAAATCATGAATTCCA
TATGTGACATTTCCAACGGACATTTCCACTGTTTAGCAGGCTAGAAGTCA
AGcttgaaaataggaataaaacttCTTTTGGTGTGGTAACTATCAGTAGG
GGTCAAAGTTTCAAGAACCatataaaactttttctcttGACTTTCACTTG
GTCAGAAATTGCAATTAATAGGCCCGTGACTAACAGAcacaaaaattaac
atctaaAATGGGACACTTTTACAAACAGCTGTAAAGTGCTGTTCCTAAAG
CTACAGTTtggattttttgcttaaattcactagaggaaaggttgaatttt
atgtttcaaaattaattttgaaaaaaattgtcaaagtaAGAAAGTATGAC
AAAAACTGGGCAAAAAATgctgtgactaacggacatttaaaaacgtgact
aacggacaaaaCGGTTTTTTAATGATTCTGACGAGGCAATCCAACCATTC
CTATAATTGGTGCTTCAGGGGTGAAATGTTATATCAATAGAATGACAGAA
GCCTAAAAGAATAGaagaattctcatttttctcTGTGTGGTACCATTCCT
GTCAGTTCCTGTCAAGTTCATAGATccccaaaatttgaaagttttgaaat
ataaagATCTGTTGAGTTTTTATGGGTGTTTTTTGCACTGCATTGTTTCT
TTGTTGAATCAGGACAAAGACAGACAAATTGGGTAagggtattttattta
tttaaggATTATTCTCCCTATTATGACAACTAGTCCGTTAGTCACAAAAA
TGTGAAATGCACACACAAAGAAAGGATTGACTATTTAACATATATCTATG
GGTAAAATGGGTAAATATAgtcaaaatagctttaataagaacaaaataca
tGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCtatttcg
tgactaacggacaattGCCATGTTTACTAACAGAAAACAACTTTTAGtga
aaaaatacttcatttttggtaaGTTTAGCCTTAATTTGTTTCCAATAAGG
TGTTAGAAAccaaccattttgaaaaagtgatcttatgaaaatttcatctc
aGTTAGAATGAgtttcgtgactaacggacacttTTTGATGAGCCTCTTGT
GAGCTACCCACTCAACCTTtagggctaaaattttgcacttaTTTTATGGT
CATAGTACTTCtgtttttaagacaaaaataaaagaaacatgcagCTTCCC
TTggctttcattggaacttttcttcttatcaccgtgactaacggacagtc
GGGTAGGCATGCATAacagccagaaaaaaaaacaaataggaGTTAAGCAA
AGCAGATTTTGATTATTGATATGTTTTCTATAATGGTTGTGAGTACATAT
TTGGATAAAAAAAGTTTCTGGTAAAGTTCTTGGTTTTCTCaagcaatttt
gtattttttttgtattaaaggCTTCACCCCAGCACAGAAGCGTGAAAATG
GactttaaagaaagattttctggaTTCTCACACTTCAACATATTTATATT
CAAGACAAAATGAAAACTCATGTTatttctgaatttgaaattttgaccta
gATGTTAATTTTCTCATGGAATTCATGTGCCTACTTTTTCAGTCCCCCCC
CCCACAGCCGAAGTAAGTAAGCTCACAGTAAGTCTTCTTCACCAAATTCT
TCAGTCTTCCACGTTTTTGTAGGTCAAGAAAACATAGAATGCACTCAGGA
GAGCTTAGGGGGACCTAAATATTATATgatattttctttcttgtttgggg
gctacttttttcaaaaaattccagGGGTTAACCTTAATACCTTTATTGTT
TCTTACCAAATTCTTCAGTCTTCCACGTTTTATAGggctaaacaaaaaaa
aacacttgtGTGTCATTtattattgaaatgaaaatgaaaaatagaagaca
ACACATTAAAAAACCTTATTTCAACCTTTCACACTATTTCCACTTTTCAG
GCAGTTGAAAGATTCCAACAGACCTGCATTAAAATTCGCAACAGAGTCAA
AGAATTTCGAACTTTGTTTGGCAGTCGTGTACCTTTATGCTCAGTGACCG
AGATTGAACAACAAgcaaaacaacaaagacaaatgGTTACCGACATTCAG
GAAGACATTAAGTGCGCCAGTGAAATTGCCGAAACACTTGCGCCTATCGT
TGATAAACCTTTAAGTCACTCCAGAAAAGGACCAAGTGCTTTAGAACGTT
ACAATTCGGCGCAACTGAAAGCATATACTGAATGTTTGTCAAAGTACCAT
GATGAGATTGAGGCGTTGTGGCAAAAACAAGCTAATTTTCATGAGCAATC
TAAAGAATTGTGTGGCTTCGAAGAAAGCTTTGGACAGGTATGAGATTCAA
TAAATAGCATACCGtggcgaatctaaaaatagacattgatttttctgttt
gaccgaaattctatcccatcaccctttgcgtttattacgcttgcacgcaa
attacactcaattacaaagaaaaagcaataactttcacgacttttgaatt
aagcCGAAAAGGATAGTGGAATTGAATTTCGatcaaatgagagaagtaat
aatcatgacgtttgcataacgAAGCGCTTTGACCCCTGGGAATGTTATCG
AAAGTTTGACAGACTATCAGAGACTTCTGTTGCCTCAATTTTGcttcaat
ttctttcaaattgtacaatttgaaaattgcaaaattttacgttactCAGC
AGTGAACGTGTTAAGCAACTTCCAGGTGAGTTCTTAGCTTGcaagatttt
cttcaatttcgaTAATGGTCATGATACcgaaacatttaaaattttattaa
aatcccCGTTCAAGGATTAATGAACACTTAGAAATGTTTCAATAAAACAT
ATTATAATGCATTTGATATCTTTTTAGATTTCGATCAAACTGATGCAGAT
AACAAGTATTCTGGATGGACGTACCGACATTGGGGATAGCTTGTCATCTG
CTAACGAACTGATGTATGAATTGGACGACTTTGAATTAAAACGAAAAGTA
AGAATTTCTTTGAATCAAAAAAGGAAGCAATGATTCGAAATCCCTAAGGA
AGTATCTACAGGGACATCATCCCTGACGGGATTTAtctaattttcgaaaa
taggAAAAGTACAGATCACATTTGATTTTGTGGTGTGTTCAAAACATTGG
GCGTTTCCAGAAATTTACCctcactgttgaggatattgacttttcgaagt
atcgaacccaaccccctggatatcctactttattagttaAGACCtactgg
atatccactcttaaaataTGCTCAATCCCCTGGATaccctctcttataaa
gatgcttgcttaaccctggatatcgtattttttacttgaaaagacactta
aCCCCTTGGAtgtccacttttgaacaaaaattgttaaccccctggatatc
cgatatcctgaacaggggggggggcacggactatttttggaaaagcccat
ttaaaGAACATCATCTAACGTAACTGTTATCATTTGCCAAGGCATTTTTA
AACGCTCGTCGCGCGAGTACAAATTTGGAGGAATTCTTTTAGTTATTCTG
TTTTGTCAGCGACTTTTTTttctatacgataaaaaaaatttgcaaacttt
ttctgTGCCTTTTCTATAAAATGAATATCTCTATCAATTGAGCTGTAAAC
CATCAACATTTTTTATAGGAGCCTTACAACGAGATGATGAAACTGAAAGA
GAAAGGAATGCAAATGGTGGCCTTCTTCGGTGAATTTGCCAAAGAAAGTG
TCGTTGTACGGTGCAACGAGATCAAACATTtgttgaaagattttgaaatc
aaattgGAAGCTCGAAAACAACTTCTTCAAGTTTCTCTTGACGTGTTCAC
TTGCTTGGATCAGGTATTAATGTTTGTTACTGCCCTTCCGTTGTTCATGT
CTCATTATCTTgcttctttttaaatttgatctcaaaatggcatttattAA
TTGACACCTATAAAATGTTAACTAATGTGACCAAATCATTCTTCATTCTT
CACTTCTTTTTTTCATATTGAAAACTTTTGCTAGTGTAACTTAGTTGACA
ATGCCCCCATATTCCTATGCCATCTTTTACACATGTGGTCCTGGATTTCT
GGAGATTACAAAATGATAAAGTGTCGTATGGTATTTGTAACACAAAAAGT
GCACAGACAATCAAAACTAGTTGTTTCAAATCAGACTTAGAAACTTTTCG
AGTGggaaattctttttctggatAACTCAAAGGTTTCCTTACAGTAAAAA
GAACTCGACTTCCCTTTCCAAACTTCGGTTGAATTGAGTTCAATCGGTGA
GCTATACGTACGATTAAGCCATACAAGCTTTGGTTAAAAAAGCTGGACTA
AACACTAACCACTTTTCATACCTTGTGAGGTTACTGTTGTAACGTTACCT
GTACAGTGGAGTTCTTGTAACTCGAATACCTACGGgggacacaaatttgt
tcgagctaaggaaatttcgagatatTGAATGTTTATAAGGCATTGCAAAT
TGTAGGGACTAGAAAACGTATTCGAGTTATCGAGTTCGCTGTATGTCTTT
TGTTTATAGATCNTTCGAGTTagggagacattcgagttatagagtttcGC
TGTATATCTTTTGTTTATAGATTGAGAAATGGTGTCAAGTTGGTGTGGAG
CTGCTAGCAAGTCAGCCTGTGGAAGCTTTCAACCAAGAAGAAGCAGCTAA
AAAATGTTACGAAGATATCCAAAACTTCATGAAAAACAAATCTGGTATCT
CCATGAACAGAATacgaaaattaaaagaattatgTCAGAAGTTAGGTAAT
CCCAGTATTGATGAAAGATGTGAGAATTCGTTCAAGCGGATTCAAGAGGT
CACTGAAATGTTGGAGAAAAGAGAGGCAAGGTCAGTGGAAAAACACTCGA
TACCTCATATTTATCGTTTTACCCTTTGTTTGTACCTTGTTTTGCCGATA
ATCATCCGTCACACGTTTTTATAGAAcattcgatggccaaaatattaaga
aaaattaaaaatattttaaggcttcgcgtgactctaaaacactcaatttc
tcAAGAAATTGCACTACAGcagtcacaaaatggtgaaaataagaacattt
ttagagtTGAAACCTAAAAAGTTAATAACATCCGGAAGttgtaaaaattt
tggatgtaaacatccttgttttgaaaatatatcaAACTAGAaaagacaac
aacaacaacataccAGATAATGTTTTCTCCGTCTggtttcaaaatattgt
ttcgTAATTTTACAGTGTAGACTGTGATTCGCCCCCAGCTCGAAAGTAAA
TATAGTGAGCGAATAAAGCCGATTTATAACTCTTGTTTGGTTGAGGACGA
ATATATATGGGGAATGGTTTTCTATTCCTCTGTTTGCCGACAGTTTATGT
GTAATTTTTTCTTGACCTTATCATCCACCagattttgtttatttattttt
tcggttagtgtaaaacgcaggtcacaggtcgcaggtcacaggttacaggt
cacaggtcacaggtcaacaaagtgcagaccggaaaaaagataataagatc
ataacatatacataacataacatcaatacataacgcaaaaaagtaataca
tgttatttagatagaataacaacctagtgacacttacttacaaaaataat
gacaaaatcataaaatatgatgcctaacaagacaaaagcacgaaaaaatt
attatacaaaatgtgatgtggatggtgtgaatggataaaatatggcacca
aacagaagcttgcaaggtccctaagagagtggttttagaaggatggaact
aattaattattcagttatcaTTTTAATGTcttaatgacaatttttgacaa
aaatattaacagaatcataaaatctgatgcaagaaaagacaaaaacacga
aaaatatttataatacagaacgtgatgttgatagtgtgaatggatataaa
acggcaccaatcagaagcttgtgaggtcccttaAGAGattaagagagtgg
ttttagaaggatgaaactaattaatcattcaattgttattttaatgactt
aaaatgacaaattttgacaaatatattgacagaatcacaaaatatcatgt
caagagaaaaacaccaaaaatatttagcataccgaatgtgatgataacaa
tatggctggatataaaattacaccaatcagaagctcgtgNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNttctctgagaaggtagttttagagcgatgtgttttattatat
gtatgtaaccatcatataacattacaaacattacaatatgtaatatacct
gttatacgtaaaATATGGTTACAAATATTTTCtagtctgcgttatacacg
gcgcaaactgcgaaagatcgataaaagcacacggttaaattttgatgttt
gaaatggttttatatagatgaaattgcttgagaattatgttttgataatt
ctttgtgttttccaaacattttcctctgcaatgacattgattagagtcaa
cctgtcatcactgacctgtgacctgcgacctgtgacctgcgttttacact
aaccgttaTTTTTTTGTAGGTTTGAAGAAAACTCGTGAATTTCTTACAAA
ATCTCTCAACCTTATGAGTTTTCatttaaattaatttgattCCGAAACAA
AGTTCTCTTTCTAACTTCTTACGTTTTTTAGTTTGAAGAAAGTGGCGTTA
AAACCAAAACGCCCTGTTCAAAGGGTGGAGGCTATCGTCATCAATAAAGA
CTAtgatttacagaaagaaaaaggTAGGGAAAACGAGAAAGAATAACGAC
TCATTGTGCTTAACGTCGAAAAAGGTCCATCAGTAGCTATCGACGGATGA
CCTAGTGGACTCTCGGCCCAAGCTCCCGCACCTTATAGGTTCATTTCATT
TCACAGAGTTAACAAAGCTACTGGACTTTATCCATTATTCTGAAAGTAAT
TGAAAACGGTCTAAAATGTCAGAGGCCCTAGCGCCTCCAGCACGGATATG
TTACTTCCTTTCAAATACGTCAGGTTTTAGAAGTCATTAACTATTTCTTA
AAGGTAGCCAATCACCGAAGATCCCACAAACGCCCATTATCACCACGCCC
ACGGGCGGCGTGACAAAGGAGAGTATTGAAGTGGTGGTCACAGATGACAT
AGAGAAATACAAACGAAATAAAACATTCAGAAAATCATTGAGGTTGTCTT
TCAAGAGACCCGTATCTTCACCTGCTCAGGTTAGTCTAATTGTGATTTGT
GTCAATCCATTTGTGTATTAGTTTGGTGTGTACATAAATTGAACAAATTT
CATTCCTTTGAAAGTGATCGAACCCCTAAAGAGGGGTAGTATTTTAATGT
AGATGACAAGAGATAGCGATGAGAGGTTCTTTTAACATTCAGAAAGAATT
TGCGCTTTACAGATGAGGGGAATCGAGTGTATAGATTAGCCTTAGAGTTA
ACGtttgtgtttttattcaaacttTTTGGAATTCATTATATGTGTACAAA
TAAAATGATTATTCTGCTCCAAAACGAATTCAAAACGTGATTCTTGTTAA
CCATTTCATTTCTCTTATAGTTGCAATTAGCCGAGTACGAAGAGGACCCA
GAACATCGAAAGAAAATCCGTTTCATCGTTGCTGAGCTTTGTGAAACTGA
AATCATTTACGTCAAGGATTTGAAGGAAATTATAGAGGTAAGAAGCCAAA
GTCAACGCCAAGTAGAGATCATGATTGATTTCTGCACTCACCATGCTGAA
GCTATTAAATGGATGTGTCAAAACAAACGATTTGAAGAATAAGCTCTAAT
TTGACCGCGCATCGTTActtgaaaataacaaaaaaagtttcGTGATTCTG
TTTAAACATAGGGCGCCGTATgagaaaaaagttaaatttttgacATCGCG
GCACGTAACAAGATACTTGTTATAGATTTGACTATTTACCtcagatgttt
aattttcaaagcGCGTTCAGAGGTTTGCCACGCGCTCAAGAAAATTATTG
CCATCTGTTATCAGTTTAAGTAAGCCGTATTAAACCAGCTACCAAATCAG
CTGAAAATTCGCAGAGATTGAGCGTGGTCTGTATAGATATTACACCTCAG
GTCTGTATCTCACAAAACATTATTGTTAACATAATTTCGTACTTTTTGTT
TCAGGGTTATTTTGCGATGTTCGACAATCCTTCTTTCAACGTACCTGAAC
AATTTCGAAGTCAAAAAGCCGTCATCTTTGGAAACATTgatgaaatttat
attttccaCAGCGAGTAAGATACGATACTACTTTTGAtgttaaaaaaagg
ttttagaaattagttaaaatcaacaaaacctGCAATTGCAACATATTTCA
TAGTACAGATTTTCAGAACAGTACTCTGTCGGTTCTCTTTTGCTCTTTGA
CTTTCCTTCCTggcttttttcaaagaaaaacaaagttttatATTGGTCGA
TTAGTATAGTATTTTGAATCAAACTGAAGTATTTGATCGAGGAAAACTTT
AAATCCAGAAGAAAGCTTTTCAAACTTCTATCATATCgaattttctttac
tttcagAATATTTCTGGAAGATTTGAAGGCTTGCAAAGATGCACCTTACA
TGGCTGGTCATTGTTTTCTAGATAAAGTAAGTATGGTTTTGTAAACAACT
TGTTGGCATATAAATTGTTTTAATTCGAACGTACAAGCAATTGTTTATTT
AGAGGCTGACTTTGTATAAGGCAAGCTTTTGAGAAGATTCAGATTTTTTA
TGCGAGGATTTCGTATGATATTCAATGTACAGTGGAGTCTACACAACTCC
AACACGCATGGGTaatacaaatttgttcgagttaaggagatattcAAGTT
AAAAAGATTCCACTGTATTATTAACATATGTATTAACATCAATTTTGAAA
GGCGGTCTTTCTGTTTTTGTTGTGTATTCTCGTCTATCCAACTCGAGAAA
AAGCGAATTCATTTTTGTAATCCATGTAAAGAACAACACGTTCTTTCTTT
GGTGACTTCTACCAGTTTGTGGTTGTTGGGATTCACGACAATTTCTTTCG
TTTTGTATTTGTAGAAAGAAGAGTTCCAGTTCTACGCGACATACTGTAAA
AACAAACCCAAATCCGAATTGTTGCGAAACGAACTTCACAAAACCACCTT
TTTACAGGTAAAGTAGAACTTAATACGCCTTTTTTACGTTCATATAATGT
TCCATGGACGTTATGGACACAATGTGGCCGTTTAAAGGATATATTGAACC
GGCTGGTCAAAGACTGACTACACTTTATATAATATagggtgaaaacaaaa
aaaaaaaacaaaaaaaaaaacaaaaaaaacggtGGTGATACGGTCTTAAC
GGTACTAACCCAATATATAACGTATCCCACCTCAAGAAGACTGTGTAACT
AATAATATTCTTTTTGAATAATGGTTTAAGTGGTAAATACTTACTTTGGA
GAGTGCTATCTACCAGGGTAGATAAGATTCATAAGAGCATTCATTCCCGC
TTTTCAGACTCAATACCCTAACTGTTAGAACTTTATTTTCGCGTAGGCCA
TACAGAAACAGCTTGGACATCCTTTAAATTTGGATTCGTATCTTTTGAAA
CCGGTTCAACGAATCACCAAGTATAAACTCCTACTCacagaaatgttgaa
atatgtCAGCAAGAAGAATCCAGCTTATTCCGATATCTTGGTAAGTCGGT
GAAACCGGGATATTTCTACGATCGAAAATCGAAggaaattcgatgaaaat
tctATTAGCCTTTCGATTACATTTTGGGAAGACTAAGAAAAGTGGCTGAA
AATTCTATCCTTATCATATGTAGGCAAGAGCTCATATTATCCGAGTAAAG
AAAAGTTGGATAGGGTTCTTTTCAACTgttgtgtttttattcaaagctCA
ATATTTTGTTTTAGGAAGCACTAGTTTGCATGAAACGCGTTCTGAGGAAC
GTTAATGACGTCATGCATTCGTCCGGATTGACAGGCTTCCCGGTAAGTTT
TTTCTCTCATCATTCCGTATTTATAATAGTAAGTAACGAGTGGTACTCTT
TTGGGCAGGGATCAAGGGAGTCTGACCTGGGAAAGCGAATAATGTTGTAC
CACACCTGTTTGCAAAATCCCGCTTACTAACAACTTAGATCGTATTATTT
GGTTGGGACTGAACTAACAACCCTTGGGTTGCAAGGCGAGTGCTATGCCG
GCTGAGCTGCCTTGTCAGCCGGTATTGATACATCAAAGAATCTTgcttta
atttattttaaaagacATTTGATAACTATTCTTTGCACTTTGAAACGTAA
ACTAGAACTGAAATGTCTCTCGATAAATAAACAAGTATTGATCCCCTATT
GTAATATTTCTATTGCTCCCGTTTCAGAAAAATTTGGATGAGCAAGGAAA
GTTATTACTGCAAGACTCATTCACTGTTTGGGAAGGCAAGAAAAGCACTA
CATTGAAGCAACTCACCAAACTGGGTGCAAAACATCGACAAGTATTTTTG
TTCGAGAAATGTTTGATCTTTTCTAAGAAGGAAGTGGAGAACGGACGAGA
TCTGGGAACGTATCAATATAAAGGTCATATTTGGGTAAGTTTTACCTGCT
GAAAGAAAGTAGTATGTCGTATGTATTGTCCCTCATAAAAACCTCATTCA
AAATTGGGCAGGGAAAAACAGCGCTCATAGTTCCAGTTCCTCACGAGGAG
CACGTTGATACAACGCCTCGTTTCGAAGATGCCATTACcaattttcatct
tctttattTTACAGACAGCAGATATTGGCGTTACCGAATCAGTTCGAGGT
GATGCAAACAGATTTGAAGTCTGGAGTAAAATTGTTGTATACACACTACA
GGTCAGTTTTGGGAACATTTTGATCGTTTGTATTTTTTTCGACGAAATTT
TTCTTTAGTAATTTTCCTGTTTCATACTCTTCGGCccggattttttttga
aaactccgggactgaaaattctttttgaaagtCTACTTGATAAGGCACTG
AGCCGTTATTCAGTTTTCCGgatatttttactatttttgagTTAAAACCA
TTGCCTTAGTTATCCCTTACTTCTCATTTTTTCTTccgaaaaagaaaact
ttttcttGGAAGTGAGGTGAGGGTTTATTTATAGCTTTTTGGAGACATTT
TACTCTAAAATGTCCAAGCAGGGTGTCTCTTTTGCTTGAAATTGTGATTT
TTAGATCGGACCGTTATTTCAGACTCTGTTCTTTCGTGGTTGATATTGCA
TAATCTAAGAATGCCTTCTTCTTTTAGGGTATCTTCATTTTCTGGTTTGA
agttaatatttttcttaatttttagcaCTTTAACTAATATTCAACTATGC
CCCTTAAAATCCAACAAGAAAGGGTTAAAACCCGTTAAAacctttggatt
tttttttcacttcacgTTTCTCTCCCTAaattttttcaaccattttaTTT
GCAGGCGAACAATACAGACATGAAGACTAACTGGTTATCAGAAATTCGCA
AAATCTTAATGTCTCAGTTCGAGGGAGCAAAAGGTAATAGAGAAATATTC
ATCTCTTTCTATGAGCTGAATTGTTATATTATTTCAGCGTAGTAGCGAAA
AATTTTGACTGGTAGAAAGTCCATTAAATATGGTTAAAATACTCTGCTTT
GAACACCATTCTACTCATGAGCTTTGTTGTGTTTTAAGGAAAAATATACA
TCCAATTGATTGACCCCCTGTCACCACACTACTGTCAGTAAATTAATGAA
GGAGTCACTGCAGAAGGAGTCACTGCCCCCACTGCCCTCAAGTGGTCGTT
TTTTTGAGGCGTTGAAATGGCAAGAGTCACTTGAAATTTGCCTCTTTGCT
TTTTTACTTCCTATGATTTGCAGTTTTATCCCAAAATTTTTGTGCTCGCT
TCACTTGCGTCATTGTTCCAAGATTTTTCTCAATATCGGGGtgccaaaat
agaaaaagatcCGAGTAGTTCTTCAACCTTAAAAATTTCTACGTTTTCAT
CTCTAGAAACACTGACCCAAAAGCTTTCTTCAGATATCTATAAAAGCGAC
GACGTCAAACAACAATTACGACAAAAACTGAAATTTCTCGGTAAGTTATT
TCAAGCGTAATGCCATTTCTTAGTATTTTCCACTAATTATGTTGTTGTTC
GCAAATCGGACTACGCTAATAAAATTGCTGAAACTTTGTTGTTAATGAGT
CATAACTAAAGAAAAGTCTAGGCTGTAAGAATTATCATTATGCTACCTTC
GgctttgtagaggtctgcgatttagAATAAGAAAAACCTTAATATTTCCT
ACCGGTAcagttttatgttttaaatattcatcttatctggcacccagatg
tagaaatttttttctcacacgttaaagctctgaaggtcgggaaaattttc
cacATCTGTTGATTGtagaattttgcaagaccgcgtcaaggattttgcag
cgggaggcctGGTAGCCCAGcactcgttttcggggattggtgggtccaac
cgaaatactTTTAGGTTTACGCGCAAGgatagttgaacccgactggggtT
ACGCCACATCAAAAACCGACTATCATTcttctccgatgggaaattggccc
gctcctttagagcttcagcgtgggtggccgccaatccgccatcggaatat
taGGTAAGTATTCATCAGACGTTTATGGAGATTACATTAGATTAGCTTGG
TTCTTTCTTCCAATCATCATcctgcttttcttttctagatccTTCCTTAC
GAGCTTCCACACCTGTGCTCAACCTCAATCCTTCAGATATTGGTGATCGT
CCACGCATGAATACGTTTGGCGAGTgagtgtttctttttaatttgtgCTT
GTTTGCACTCAAAACTGTAGGCAAAATAATGGTGTAAAAGCAGGTATAAA
GCCCGAAAGCCCTGAATCTGATTGAAACGAAATGGAAAatattatttata
atttttctcTGATGCTTTTCAACTTCCTTCCTGGTAATCAATTGCATAGC
TGAGATAAGATTCTGTTTAATCATTGATCTAATTTTTTCCTTACTTTAGA
TGCTcgcctaaaaaagaaaaacttcgc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029362	XLOC_029362	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_104	supercontig	scaffold_104:145413..161589 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34027	1.55688	2.62598	1.85825	42.5853	31.8357	15.8537	18.869	10.3102	12.5152	7.53167	7.48779	4.68033	4.04967	5.48353	4.93874	5.18461	8.11042	3.70188	8.47458	5.1441	3.72126	1.96351	4.1637	5.47936	4.80799	7.50211	1.0447	3.80143	4.08344

Blast

[Close]

BLAST of TCONS_00045940 vs. Swiss-Prot (Human)
Match: MCF2L (Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L PE=1 SV=2)

HSP 1 Score: 398.282 bits (1022), Expect = 2.742e-118
Identity = 284/926 (30.67%), Postives = 465/926 (50.22%), Query Frame = 2

Query:  323 LQQKYIYLNGCLDKEQHPILICSFNRSLGSLDQDDFKSTVNYFKEISSVLWERCKFLVIIDRQHGKWNSVK-SILSNLQVFDADEIFKILLLKPQGFLQR-------HFGNSDVKQIKELSKHELVFLDNPTMLEDYVELACLPDEFGGFDSFNVNEWVEYTTAVERFQQTCIKIRNRVKEFRT-LFGSRVP---------LCSVTEIEQQAKQQRQMVTDIQEDIKCASEIAETLAPIVDKPLSHSRKGPSALERY--NSAQLKAYTECLSKYHDEIEALWQKQANFHEQSKELCGFEESFGQISIKLMQITSILDGRTDIGDSLSSANELMYELDDFELKRKEPYNEMMKLKEKGMQMVAFFGEFAKESVVVRCNEIKHLLKDFEIKLEARKQLLQVSLDVFTCLDQIEKWCQVGVELLASQPVEAFNQEEAAKKCYEDIQNFMKNKSGISMNRIRKLKELCQKLGNPSIDERCENSFKRIQEVTEMLEKREASLKKVALKPKRPVQ----RVEAIVINKDYDLQKEKGSQSXXXXXXXXXXXXXGGVTKESIEVVVTDDIEKYKRNKTFRKSLRLSFKRPVSSPAQLQLAEYEEDPEHRKKIRFIVAELCETEIIYVKDLKEIIEGYFAMFDNP--SFNVPEQFRSQKAVIFGNIDEIYIFHSEIFLEDLKACKDAPYMAGHCFLDKKEEFQFYATYCKNKPKSELLRNELHKTTFLQAIQKQLGHPLNLDSYLLKPVQRITKYKLLLTEMLKYVSKKNPAYSDILEALVCMKRVLRNVNDVMHSSGLTGFPKNLDEQGKLLLQDSFTVWEGXXXXXXXXXXXXGAK--HRQVFLFEKCLIFSKKEVENGRD---LGTYQYKGHIWTADIGVTESVRGDANRFEVW--SKIVVYTLQANNTDMKTNWLSEIRKILMSQFEGAK 3001
            L++++ YL+G   ++  P++      +   +   +F++ + Y   I S+      F+++IDR+  KW SVK S+L     F A+ +  +L+L+P GF QR        F   D K      K  ++ L +   L  Y++ + L ++ GG   +  + W+   TA+E F     +    ++ F T L  + +P         LC+ TE + +AK+      D++  +K    + E+L     + L      PS  +    N A ++     L++     +  W K     EQ  +L  FE+ F ++   L   +  +   TDIG+SL+    L+ +L  FE K          L   G Q++     +A +S+  +C E++HL   F  ++  R+ LL  SL++   L+   KWC  G+ LLASQPV+    ++ A+   ++I+ F++  +   +  +  + +  + + N  + E     F++   + E+  +R+ASLKK+A +  RPVQ    R EA+  +        +GS++             GG  +             Y+R K+            +S   Q + +  EE+       R +++EL +TE  YV++L  ++EGY A  DNP  +  +     ++K V+FGN++EIY FH+ IFL +L+   D P + G CFL++ E+FQ Y  YC+NKP+SE L  +     F Q  Q++L H L+LDSYLLKPVQRITKY+LLL EMLKY S+      D+ EAL  +  +L+ VND MH   +TG+  NL + GKLL+Q SF+VW   K    K       K   R +FL EK ++F KK  ENG       +Y YK  +  A +G+TE+V+GDA +FE+W  ++  VY +QA   ++K  W++EIRK+L SQ +  +
Sbjct:   76 LKKRFAYLSGGRGQDGSPVITFPDYPAFSEIPDKEFQNVMTYLTSIPSLQDAGIGFILVIDRRRDKWTSVKASVLRIAASFPAN-LQLVLVLRPTGFFQRTLSDIAFKFNRDDFKM-----KVPVIMLSSVPDLHGYIDKSQLTEDLGGTLDYCHSRWLCQRTAIESFALMVKQTAQMLQSFGTELAETELPNDVQSTSSVLCAHTEKKDKAKE------DLRLALKEGHSVLESL-----RELQAEGSEPSVNQDQLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQCLQLRHFEQGFREVKAILDAASQKIATFTDIGNSLAHVEHLLRDLASFEEKSGVAVERARALSLDGEQLIGN-KHYAVDSIRPKCQELRHLCDQFSAEIARRRGLLSKSLELHRRLETSMKWCDEGIYLLASQPVDKCQSQDGAEAALQEIEKFLETGAENKIQELNAIYKEYESILNQDLMEHVRKVFQKQASMEEVFHRRQASLKKLAARQTRPVQPVAPRPEALAKSPCPSPGIRRGSENSSSE---------GGALRRG----------PYRRAKS-----------EMSESRQGRGSAGEEEESLAILRRHVMSELLDTERAYVEELLCVLEGYAAEMDNPLMAHLLSTGLHNKKDVLFGNMEEIYHFHNRIFLRELENYTDCPELVGRCFLERMEDFQIYEKYCQNKPRSESLWRQCSDCPFFQECQRKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKY-SRNCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKRGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMAAVGITENVKGDAKKFEIWYNAREEVYIVQAPTPEIKAAWVNEIRKVLTSQLQACR 952

The following BLAST results are available for this feature:

BLAST of TCONS_00045940 vs. Swiss-Prot (Human)

BLAST of TCONS_00045940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MCF2L	2.742e-118	30.67	Guanine nucleotide exchange factor DBS OS=Homo sap...	[more]

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TCONS_00045940 (transcript) - C. hemisphaerica