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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045924 ID=TCONS_00045924|Name=TCONS_00045924|organism=Clytia hemisphaerica|type=transcript|length=447bp
CTGATTATGGTGACGATGCTGATGGATTGATTGGTTTAGATGAAATGATC
CAAACAAAGTTAATGTTGAATGAAAACACTCTGAAACCAAATGAAAGCAG
TCAGACTCCTAATCAAAGCACTCAGAATCTGAATCAAAGGACTCTTAATA
CTGACCAAAGAACTTGGAATGTAGCTCAAGGCAATCAGAATCCAGATCAA
ATCACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCAATCA
GAATCCAGATCAAATCACTCAGAATCCAGATCAAATCACTCAGAATCCAG
ATCAAATCACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATCAAATC
TCTCAGCATCCAGATCAAATCTCTCAGAATCCAGATCAAATCTCTCAGAA
TCCAGATCAAATCACTCAGAATCCAGATCAAATCTCTCAGAATCCAG Run BLAST on NCBI protein sequence of TCONS_00045924-protein >TCONS_00045924-protein ID=TCONS_00045924-protein|Name=TCONS_00045924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
DYGDDADGLIGLDEMIQTKLMLNENTLKPNESSQTPNQSTQNLNQRTLNT
DQRTWNVAQGNQNPDQITQNPDQISQNPDQINQNPDQITQNPDQITQNPD
QITQNPDQISQNPDQISQHPDQISQNPDQISQNPDQITQNPDQISQNP Run BLAST on NCBI transcript from alignment at scaffold_103:6670..8140+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045924 ID=TCONS_00045924|Name=TCONS_00045924|organism=Clytia hemisphaerica|type=transcript|length=1471bp|location=Sequence derived from alignment at scaffold_103:6670..8140+ (Clytia hemisphaerica)
CTGATTATGGTGACGATGCTGATGGATTGATTGGTTTAGATGAAATGGTA
TGTATTCTAAGATCTCTAATGTACAGATTCGTTAAAATGATGACAATCAT
TGGAAATAGAGGAAATTGAAATCGTAAACCAATTTTCGAATTTCTACAAA
GGGAAAATACACGATGGTATTTATTAAATCATTTTTAACTTATTGGGACT
GATTGGGATGTAAAATTTTATGCTTTTTCCAATTAAGGGATTTTAAGTAC
ATAATTTTTTTCTGAATGATACTAACAAATCGATTGGCATTTTGCCTGCA
ACCCTCCTGTTCAGTCCAACAATTTATCAATTACAACAAATTTTTGTCTC
CATTATTAACTGCTTGCGTGGTCACGTATATTGTTAAATGTAAAAGTATT
TATAATGTCTATACTGTCACAAAAATTGATAAAATATTCACATTCGTAAG
TTCCTACTATCTTCCTTTGTCCTATTCTGCAAAAGAATTAAGGTTAAAAT
CTATTGATTTTGTCTCCCTCTTTAATTTTAAATAAAAGGAAGATTTTTCA
TTCCATAAAAAGATTTATTTTTGAGCAAACATCAAAGCGACATAGGGATA
CCTCAATTTTTCTAGAAAAGAAATTTTTGGAAATTTTAAAGTAAGTTTGC
ATTCAAACAGTTAACATGCCAAATCTAACAGACCGATTTCAATGAAGACT
AACTCAATGGAATGAGAAGATTTTAAACTTCTAAACTATAGAAATACACC
AATCATTTTTGTTAAATCAAAAGGTTAAGATATACAGAATTGATTTTCTC
CAGACAGTCAAAAGACCATCGTGTATCCTAAAGAGGCTAAAATAATTCTG
AACTCAAACTGTCCAAAACCAATACCCCTACTGAAAACTTCAAAAAGTCT
ATGCACAGGCAATTAGAGTATTTTTGTGAAAGATTAAAACAAGATCAACC
TCTGTTTGTCTTTGTTGGTGAAATAAAGTGGTGATAGTGGAAAAAGATGA
GAAATAGTACATGCTTACAAGTGTTGTGTTTAAAACAACTTTTAATTGGA
AACCTTCTTTCAAAATTTCAGATCCAAACAAAGTTAATGTTGAATGAAAA
CACTCTGAAACCAAATGAAAGCAGTCAGACTCCTAATCAAAGCACTCAGA
ATCTGAATCAAAGGACTCTTAATACTGACCAAAGAACTTGGAATGTAGCT
CAAGGCAATCAGAATCCAGATCAAATCACTCAGAATCCAGATCAAATCTC
TCAGAATCCAGATCAAATCAATCAGAATCCAGATCAAATCACTCAGAATC
CAGATCAAATCACTCAGAATCCAGATCAAATCACTCAGAATCCAGATCAA
ATCTCTCAGAATCCAGATCAAATCTCTCAGCATCCAGATCAAATCTCTCA
GAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCACTCAGAATCCAG
ATCAAATCTCTCAGAATCCAG Coding sequence (CDS) from alignment at scaffold_103:6670..8140+ >TCONS_00045924 ID=TCONS_00045924|Name=TCONS_00045924|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_103:6670..8140+ (Clytia hemisphaerica)
GATTATGGTGACGATGCTGATGGATTGATTGGTTTAGATGAAATGATCCA
AACAAAGTTAATGTTGAATGAAAACACTCTGAAACCAAATGAAAGCAGTC
AGACTCCTAATCAAAGCACTCAGAATCTGAATCAAAGGACTCTTAATACT
GACCAAAGAACTTGGAATGTAGCTCAAGGCAATCAGAATCCAGATCAAAT
CACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCAATCAGA
ATCCAGATCAAATCACTCAGAATCCAGATCAAATCACTCAGAATCCAGAT
CAAATCACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCTC
TCAGCATCCAGATCAAATCTCTCAGAATCCAGATCAAATCTCTCAGAATC
CAGATCAAATCACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATTAT
GGTGACGATGCTGATGGATTGATTGGTTTAGATGAAATGATCCAAACAAA
GTTAATGTTGAATGAAAACACTCTGAAACCAAATGAAAGCAGTCAGACTC
CTAATCAAAGCACTCAGAATCTGAATCAAAGGACTCTTAATACTGACCAA
AGAACTTGGAATGTAGCTCAAGGCAATCAGAATCCAGATCAAATCACTCA
GAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCAATCAGAATCCAG
ATCAAATCACTCAGAATCCAGATCAAATCACTCAGAATCCAGATCAAATC
ACTCAGAATCCAGATCAAATCTCTCAGAATCCAGATCAAATCTCTCAGCA
TCCAGATCAAATCTCTCAGAATCCAGATCAAATCTCTCAGAATCCAGATC
AAATCACTCAGAATCCAGATCAAATCTCTCAGAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045924-exon-scaffold_103-1491911889:6670..6716 | TCONS_00045924-exon-scaffold_103-1491911889:6670..6716 | Clytia hemisphaerica | exon |
| TCONS_00045924-exon-scaffold_103-1510915933:6670..6716 | TCONS_00045924-exon-scaffold_103-1510915933:6670..6716 | Clytia hemisphaerica | exon |
| TCONS_00045924-exon-scaffold_103-1575043694:6670..6716 | TCONS_00045924-exon-scaffold_103-1575043694:6670..6716 | Clytia hemisphaerica | exon |
| TCONS_00045924-exon-scaffold_103-1491911889:7741..8140 | TCONS_00045924-exon-scaffold_103-1491911889:7741..8140 | Clytia hemisphaerica | exon |
| TCONS_00045924-exon-scaffold_103-1510915933:7741..8140 | TCONS_00045924-exon-scaffold_103-1510915933:7741..8140 | Clytia hemisphaerica | exon |
| TCONS_00045924-exon-scaffold_103-1575043694:7741..8140 | TCONS_00045924-exon-scaffold_103-1575043694:7741..8140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_103 | supercontig | scaffold_103:6670..8140 + |
Blast
The following BLAST results are available for this feature:
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