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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045921 ID=TCONS_00045921|Name=TCONS_00045921|organism=Clytia hemisphaerica|type=transcript|length=804bp
AAGGTTTAGAGCTTCTTTCTTTGTTTCAATCAGTAATCTAAACTAAAAGC
TATTGCTTGATAAAGTTTTCATAATCTTTAGGGTCCCATCTTTCCTTTAC
AGCTGATTTCTTAGCTGCTTCTGCTTAGTCGTCAAAACTTGTGGGAAAAA
GTGCCAAATCAATCTCTGGTTTATGGCTAGTACCCATACTTCCAcgaatg
caaaagttttttccacATTTGCTGATTTCACGGATGATATTGTAATATGT
TTGACGAATCATGAATGGTTTGTTATCATAATACATTTTCTTTGCATTCA
TGCTTTGGCAATCGTTAGACGACTGAGGACAAACAGCAACAGCCAATGTG
TTTCCATGGAGATCGAAAGAATAAGGAGCCGAATACATGAAATGAACAAA
ATCATCTTTGATCTTGAATGTACATCTTAACCATGTTCCTGTTGCTAAAT
TCCCGCTTTTATGGCTTGCGAAGGCTTCTTTTTGTCCAGAAGCTACGTTC
TGCATTGGGACGTTAACATAACCTGTCCGGATCTCACAAACCTCCATCCG
GAGCGTAAATGAGGAGTAATTCTCAACTGATCCAGATACGGCAACAAcgt
atctttcttctttcaaatttttgactgTAGTATGGGCCAATGTTGTTCCA
GCTTTGATAgacttttttataataccaagaTTGATTTGTATTGAATCCAC
ATGATTGGGAAAAAGTGATAGTATGCCGAAGCAACAAAATAAACGTATTG
CAACCATCATTGTGTGCCGAGATTGAATACGTGTTAATACTGGAGAGATT
GCAG Run BLAST on NCBI protein sequence of TCONS_00045921-protein >TCONS_00045921-protein ID=TCONS_00045921-protein|Name=TCONS_00045921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
AISPVLTRIQSRHTMMVAIRLFCCFGILSLFPNHVDSIQINLGIIKKSIK
AGTTLAHTTVKNLKEERYVVAVSGSVENYSSFTLRMEVCEIRTGYVNVPM
QNVASGQKEAFASHKSGNLATGTWLRCTFKIKDDFVHFMYSAPYSFDLHG
NTLAVAVCPQSSNDCQSMNAKKMYYDNKPFMIRQTYYNIIREISKCGKNF
CIRGSMGTSHKPEIDLALFPTSFDD Run BLAST on NCBI transcript from alignment at scaffold_102:473302..474105 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045921 ID=TCONS_00045921|Name=TCONS_00045921|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_102:473302..474105 (Clytia hemisphaerica)
CTGCAATCTCTCCAGTATTAACACGTATTCAATCTCGGCACACAATGATG
GTTGCAATACGTTTATTTTGTTGCTTCGGCATACTATCACTTTTTCCCAA
TCATGTGGATTCAATACAAATCAAtcttggtattataaaaaagtcTATCA
AAGCTGGAACAACATTGGCCCATACTAcagtcaaaaatttgaaagaagaa
agatacgTTGTTGCCGTATCTGGATCAGTTGAGAATTACTCCTCATTTAC
GCTCCGGATGGAGGTTTGTGAGATCCGGACAGGTTATGTTAACGTCCCAA
TGCAGAACGTAGCTTCTGGACAAAAAGAAGCCTTCGCAAGCCATAAAAGC
GGGAATTTAGCAACAGGAACATGGTTAAGATGTACATTCAAGATCAAAGA
TGATTTTGTTCATTTCATGTATTCGGCTCCTTATTCTTTCGATCTCCATG
GAAACACATTGGCTGTTGCTGTTTGTCCTCAGTCGTCTAACGATTGCCAA
AGCATGAATGCAAAGAAAATGTATTATGATAACAAACCATTCATGATTCG
TCAAACATATTACAATATCATCCGTGAAATCAGCAAATgtggaaaaaact
tttgcattcgTGGAAGTATGGGTACTAGCCATAAACCAGAGATTGATTTG
GCACTTTTTCCCACAAGTTTTGACGACTAAGCAGAAGCAGCTAAGAAATC
AGCTGTAAAGGAAAGATGGGACCCTAAAGATTATGAAAACTTTATCAAGC
AATAGCTTTTAGTTTAGATTACTGATTGAAACAAAGAAAGAAGCTCTAAA
CCTT Coding sequence (CDS) from alignment at scaffold_102:473302..474105 >TCONS_00045921 ID=TCONS_00045921|Name=TCONS_00045921|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_102:473302..474105 (Clytia hemisphaerica)
GCAATCTCTCCAGTATTAACACGTATTCAATCTCGGCACACAATGATGGT
TGCAATACGTTTATTTTGTTGCTTCGGCATACTATCACTTTTTCCCAATC
ATGTGGATTCAATACAAATCAAtcttggtattataaaaaagtcTATCAAA
GCTGGAACAACATTGGCCCATACTAcagtcaaaaatttgaaagaagaaag
atacgTTGTTGCCGTATCTGGATCAGTTGAGAATTACTCCTCATTTACGC
TCCGGATGGAGGTTTGTGAGATCCGGACAGGTTATGTTAACGTCCCAATG
CAGAACGTAGCTTCTGGACAAAAAGAAGCCTTCGCAAGCCATAAAAGCGG
GAATTTAGCAACAGGAACATGGTTAAGATGTACATTCAAGATCAAAGATG
ATTTTGTTCATTTCATGTATTCGGCTCCTTATTCTTTCGATCTCCATGGA
AACACATTGGCTGTTGCTGTTTGTCCTCAGTCGTCTAACGATTGCCAAAG
CATGAATGCAAAGAAAATGTATTATGATAACAAACCATTCATGATTCGTC
AAACATATTACAATATCATCCGTGAAATCAGCAAATgtggaaaaaacttt
tgcattcgTGGAAGTATGGGTACTAGCCATAAACCAGAGATTGATTTGGC
ACTTTTTCCCACAAGTTTTGACGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045921-exon-scaffold_102-1491911889:473302..474105 | TCONS_00045921-exon-scaffold_102-1491911889:473302..474105 | Clytia hemisphaerica | exon |
| TCONS_00045921-exon-scaffold_102-1510915933:473302..474105 | TCONS_00045921-exon-scaffold_102-1510915933:473302..474105 | Clytia hemisphaerica | exon |
| TCONS_00045921-exon-scaffold_102-1575043694:473302..474105 | TCONS_00045921-exon-scaffold_102-1575043694:473302..474105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:473302..474105 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015926 | Cytolysin/lectin |
Blast
The following BLAST results are available for this feature:
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