TCONS_00045918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045918
Unique NameTCONS_00045918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045918 ID=TCONS_00045918|Name=TCONS_00045918|organism=Clytia hemisphaerica|type=transcript|length=616bp
CTAAATGTTCCAACACGTCTGAttggaaaatttcttcaaaCGGAAGATTG
TAAGAGTTGATAAACTTTGTTTTCGTATCAATCCCTTTTTGAATCAAATC
CTGAATGAAACGGGCTGTGTTGCTGCTGTTGTGGTCCTTCTCCTTATTGC
CTGACGAAAGatatcttttcaaatttttaagatCATCGATTCCAATATCA
ATTGGATAGTTGTCATATTTTGTTGATGATATAGCCTTACCTAAAGGGCA
TATAACGATAGTTGGAAAGTCAAACTTTCCAGTAGCGTATCTACGGCTAA
TGCTGGTATTAACTTTATGAGCAAGGTAGTCATTTAGAAGACTTTCGAAA
AGGTAAATTGAGAAAGCAAATACTGCTGAACAGATTATGAACCAGGTGAC
GCGGCGATAGTTTGTACCTTCAAAGAGAAATCGAAATCCATGAAGAGTTA
TGCCAGAGTAAAATTCTTCCACTAAATCTTTATGTGTTTTTAATGGTTTA
TGATGGATGCTTATATCCGCTTCTGTCTTCATTTTTTCTCACTGTCTTTT
GGttctaaaaaattcaaacagCTCTTTATTGTAGCCTGGATATCTAGGTg
ggaacctttttttgat
Run BLAST on NCBI

protein sequence of TCONS_00045918-protein

>TCONS_00045918-protein ID=TCONS_00045918-protein|Name=TCONS_00045918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MKTEADISIHHKPLKTHKDLVEEFYSGITLHGFRFLFEGTNYRRVTWFII
CSAVFAFSIYLFESLLNDYLAHKVNTSISRRYATGKFDFPTIVICPLGKA
ISSTKYDNYPIDIGIDDLKNLKRYLSSGNKEKDHNSSNTARFIQDLIQKG
IDTKTKFINSYNLPFEEIFQSDVLEHL
Run BLAST on NCBI

transcript from alignment at scaffold_102:414139..414754

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045918 ID=TCONS_00045918|Name=TCONS_00045918|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_102:414139..414754 (Clytia hemisphaerica)
atcaaaaaaaggttcccACCTAGATATCCAGGCTACAATAAAGAGctgtt
tgaattttttagaaCCAAAAGACAGTGAGAAAAAATGAAGACAGAAGCGG
ATATAAGCATCCATCATAAACCATTAAAAACACATAAAGATTTAGTGGAA
GAATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGG
TACAAACTATCGCCGCGTCACCTGGTTCATAATCTGTTCAGCAGTATTTG
CTTTCTCAATTTACCTTTTCGAAAGTCTTCTAAATGACTACCTTGCTCAT
AAAGTTAATACCAGCATTAGCCGTAGATACGCTACTGGAAAGTTTGACTT
TCCAACTATCGTTATATGCCCTTTAGGTAAGGCTATATCATCAACAAAAT
ATGACAACTATCCAATTGATATTGGAATCGATGatcttaaaaatttgaaa
agatatCTTTCGTCAGGCAATAAGGAGAAGGACCACAACAGCAGCAACAC
AGCCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAA
AGTTTATCAACTCTTACAATCTTCCGtttgaagaaattttccaaTCAGAC
GTGTTGGAACATTTAG

Coding sequence (CDS) from alignment at scaffold_102:414139..414754

>TCONS_00045918 ID=TCONS_00045918|Name=TCONS_00045918|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_102:414139..414754 (Clytia hemisphaerica)
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGATTTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGTACAAACTATCGCCGCGTCACCTGGTTCATAATC
TGTTCAGCAGTATTTGCTTTCTCAATTTACCTTTTCGAAAGTCTTCTAAA
TGACTACCTTGCTCATAAAGTTAATACCAGCATTAGCCGTAGATACGCTA
CTGGAAAGTTTGACTTTCCAACTATCGTTATATGCCCTTTAGGTAAGGCT
ATATCATCAACAAAATATGACAACTATCCAATTGATATTGGAATCGATGa
tcttaaaaatttgaaaagatatCTTTCGTCAGGCAATAAGGAGAAGGACC
ACAACAGCAGCAACACAGCCCGTTTCATTCAGGATTTGATTCAAAAAGGG
ATTGATACGAAAACAAAGTTTATCAACTCTTACAATCTTCCGtttgaaga
aattttccaaTCAGACGTGTTGGAACATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029341XLOC_029341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045918-proteinTCONS_00045918-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045918-exon-scaffold_102-1491911889:414139..414754TCONS_00045918-exon-scaffold_102-1491911889:414139..414754Clytia hemisphaericaexon
TCONS_00045918-exon-scaffold_102-1510915933:414139..414754TCONS_00045918-exon-scaffold_102-1510915933:414139..414754Clytia hemisphaericaexon
TCONS_00045918-exon-scaffold_102-1575043694:414139..414754TCONS_00045918-exon-scaffold_102-1575043694:414139..414754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:414139..414754 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.264941	0	0	0	0	0	1.40355	0.368704	0	0	2.98508	2.97981	0.369616	0.701787	1.53785	2.73101	0	0	0	0.0985736
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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