TCONS_00045913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045913
Unique NameTCONS_00045913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045913 ID=TCONS_00045913|Name=TCONS_00045913|organism=Clytia hemisphaerica|type=transcript|length=563bp
AGCAGGACTCGTGATTCTAGGGCAATTTTAGCTGAACTCGtgattctagg
gtatttttagTTGGAttcgtgattctagggcagtTTTAGCTGGATTCGTG
ATTCTAGGGTAATTTCAGCTGGACTCGTGATTCCAGGGTAATTTCAGCTG
GActcgtgattctagggcagCTTTAGCAGGActcgtgattctagggcagt
TTTAGCAGGACTCATGGTTCTAGGGTAATTTCAGCTGGACTTGTGATTCT
AGGGCACTTTTAGCTGGACTCGTGATTCTAGGGTAATTTCAGATGGACTC
GTGATTCTAGGGCATTTTTAGCAGAActcgtgattctagggcagtttcag
ctggattcgtgattctagggcatTTTTAGTTGGACTCGTGATTCTAGGGT
AATTTCAGATGGACTCGTGATTCTAGGGCATTTTTAGCAGAActcgtgat
tctagggcagtTTTAGCTGGACTTGTAATTCTAGGGCAGTTTCAGCTGGA
ttcgtgattctagggcatTTTTAGTTGGATTCGTGATTCTGCTAGATAAA
TATAGACTTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_102:267402..267964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045913 ID=TCONS_00045913|Name=TCONS_00045913|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at scaffold_102:267402..267964 (Clytia hemisphaerica)
AAAAAAGTCTATATTTATCTAGCAGAATCACGAATCCAACTAAAAatgcc
ctagaatcacgaaTCCAGCTGAAACTGCCCTAGAATTACAAGTCCAGCTA
AAactgccctagaatcacgagTTCTGCTAAAAATGCCCTAGAATCACGAG
TCCATCTGAAATTACCCTAGAATCACGAGTCCAACTAAAAatgccctaga
atcacgaatccagctgaaactgccctagaatcacgagTTCTGCTAAAAAT
GCCCTAGAATCACGAGTCCATCTGAAATTACCCTAGAATCACGAGTCCAG
CTAAAAGTGCCCTAGAATCACAAGTCCAGCTGAAATTACCCTAGAACCAT
GAGTCCTGCTAAAactgccctagaatcacgagTCCTGCTAAAGctgccct
agaatcacgagTCCAGCTGAAATTACCCTGGAATCACGAGTCCAGCTGAA
ATTACCCTAGAATCACGAATCCAGCTAAAactgccctagaatcacgaaTC
CAActaaaaataccctagaatcaCGAGTTCAGCTAAAATTGCCCTAGAAT
CACGAGTCCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029336XLOC_029336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045913-exon-scaffold_102-1491911889:267402..267964TCONS_00045913-exon-scaffold_102-1491911889:267402..267964Clytia hemisphaericaexon
TCONS_00045913-exon-scaffold_102-1510915933:267402..267964TCONS_00045913-exon-scaffold_102-1510915933:267402..267964Clytia hemisphaericaexon
TCONS_00045913-exon-scaffold_102-1575043694:267402..267964TCONS_00045913-exon-scaffold_102-1575043694:267402..267964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:267402..267964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20264	1.36822	2.72337	1.11016	0.675759	0.43999	0.644241	0.723756	0.253359	0.313827	0.101536	0.133491	0.266612	0.553758	0.28454	0.183213	0.526641	0.231339	0.532678	0	0.387592	0.14179	0.344729	0	1.29122	0.288095	0	0.146659	0.111236	1.13332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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