TCONS_00045907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045907
Unique NameTCONS_00045907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045907 ID=TCONS_00045907|Name=TCONS_00045907|organism=Clytia hemisphaerica|type=transcript|length=273bp
NNCAACATAAAAAATTGTCCAGCACAGTTCAGTTGTCCAAAGTTGTCAAA
TTGTCAAAATCCAGTAATGGCTTCCATCATTCAAATTGAAACGACAACAA
AATATgttaattttaaataaatcctgCGTCCTGCAACACTAAAAACCCAT
CACCGATCTCTATAACTCTATCCAATCACACCACATACTTTACAACCAAA
TTTGATAAACTATTTCATGATTTGTATTTGTAATCTACTGTAACTCcatc
tttatttgtttttgatatcaaag
Run BLAST on NCBI

transcript from alignment at scaffold_102:129177..129449

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045907 ID=TCONS_00045907|Name=TCONS_00045907|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at scaffold_102:129177..129449 (Clytia hemisphaerica)
ctttgatatcaaaaacaaataaagatgGAGTTACAGTAGATTACAAATAC
AAATCATGAAATAGTTTATCAAATTTGGTTGTAAAGTATGTGGTGTGATT
GGATAGAGTTATAGAGATCGGTGATGGGTTTTTAGTGTTGCAGGACGcag
gatttatttaaaattaacATATTTTGTTGTCGTTTCAATTTGAATGATGG
AAGCCATTACTGGATTTTGACAATTTGACAACTTTGGACAACTGAACTGT
GCTGGACAATTTTTTATGTTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029330XLOC_029330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045907-exon-scaffold_102-1491911889:129177..129449TCONS_00045907-exon-scaffold_102-1491911889:129177..129449Clytia hemisphaericaexon
TCONS_00045907-exon-scaffold_102-1510915933:129177..129449TCONS_00045907-exon-scaffold_102-1510915933:129177..129449Clytia hemisphaericaexon
TCONS_00045907-exon-scaffold_102-1575043694:129177..129449TCONS_00045907-exon-scaffold_102-1575043694:129177..129449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:129177..129449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58434	2.00923	3.95342	1.70594	2.19816	1.15801	2.79418	0.65397	0.91572	1.7014	0	1.76605	0.361357	0.0457156	0.389401	1.01858	0.407881	0.418065	0	0	0.788121	0	1.70398	1.13276	1.75007	4.16506	3.02682	0	0.603062	1.11546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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