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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045850 ID=TCONS_00045850|Name=TCONS_00045850|organism=Clytia hemisphaerica|type=transcript|length=609bp
atttgagagaaattttagatttaatCAACGTTTTGGGGACCACATACTGT
CTATACATCAACAGACCATCTGCTTACTAATTTCAGGTGGATGATtttac
ccaaaaagttaagaacatcaacagatataagaacatccaatttTTCTGTT
ATGACGTGGTACTTTTTAGGTCCATCAAGGTGATTTTTAGACTTCTACTT
CCACGATGGACTTGATGGTAAATTGCGCCTAAACACGTGACTAGCAGtga
tggTAGCCTCAATATCCAAGCGGTTAATCGTTATCTTGATGTTTCTGCTA
TTTACAGCCAGCTTGGTCTACCTAAAtgattgtaaacccagggttgGCTG
ATCTTTAGGTTTTTGCAATATTTGAATtcaagtggataaattttcgcgtg
tactaaTTTTCGCAAGACGAGAAATTAAAGATTTCACgtggattatattt
cgcgaaagAAGTGTACCAGATGTTCCGTGACGTCAAAAACTGAAGAAGTC
ATTGTAATGCCGTTCTAGCGTCGTTAAATataataggccatttcacagtc
gcaaagcgtaatgggtaatcaggaccactgcgcgctaataacgacttact
attggtcca Run BLAST on NCBI transcript from alignment at scaffold_102:406985..409638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045850 ID=TCONS_00045850|Name=TCONS_00045850|organism=Clytia hemisphaerica|type=transcript|length=2654bp|location=Sequence derived from alignment at scaffold_102:406985..409638+ (Clytia hemisphaerica)
atttgagagaaattttagatttaatCAACGTTTTGGGGACCACATACTGT
CTATACATCAACAGACCATCTGCTTACTAATTTCAGGTGGATGATtttac
ccaaaaagttaagaacatcaacagatataagaacatccaatttTTCTGTT
ATGACGTGGTACTTTTTAGGTCCATCAAGGTGATTTTTAGACTTCTACTT
CCACGATGGACTTGATGGTAAATTGCGCCTAAACACGTGACTAGCAGGTA
CATATCTCATATCTTTGTTAAACCGTGAATGATAATTTGGGGATTTCGAC
CTCAATTTTGAGCGATAAGATTGTTTGTTGGGCGGACACGCCTTCCAGAA
TATGTTATTGTTTGTCCACATACactcttttgttttataagcatataggA
AAATCGGGTCGAGGCTCAATATGCTTAGCAATGTCTtatttggcccagcg
ctagcgagtgggcctttaaagagagtgtcactattttttttccgtgtttc
cttctgtgTGTCCGTTTTGGNTCAGTCTTAATTTATACTTATTTTTATGC
CTAGACttcgatttgttgattttctttgggttcatgaaaattttcgaatt
cTTAAGTCGGAACATTGCTTCATCTTTAGTCAAAAAAAGCTCAACaagta
accctaaaaaggtcagcTTTTTAGAAAagctttcacgattttttttttgc
atttcagcttggaAGTTTAGCATTGTCCTTTGTTTTACCGGAattgagcc
taagtatgcttataaacgttatgcttataaaaaagtgtatatcaATACGT
CTTTCTTTTATTCGTGTGTACGATCGACTTTTAACTGTTTAAAGAACGTC
ATCACTTTGAAAGTACAAAAATTAATGAGGTTGTACAAAAAAGTCCCCTA
TGGTTCTGAACCACCCCTAAAAGTACTTAGTATTGATAGAGTTGTATAGT
TTCCcatgtaatttttcaaaacatttaatcTTGATTCTATTATATTGCTG
AAAATCAACCTGTAGGTTATGACTcgtttgttttaaatttccacAGAGCT
CTTAGTTAATTAAAAGCTCTTAGCTTGACACACGAAATTTGTCCAATCAA
AATCATGTAACATGCAAAAGTTTCTTTCAGTTTTAGTTAATTAGTCTTAC
ATAGCATGGTTTCTTACTAACATGTtttatacacctttttgaccgtcagg
cgcgtgccactttattatttaattatctccctaaactcgatccaatcctt
ttttacacctttttcttttgtctagACTGGGANCCACTAAACTCGATCCG
Atcattttttacacctttttcttttgtctagactgggacggttttaggtt
GGTAAAACTGACAAAAATATGCCCgagcggcaattggcggctacgatcga
aaaggtgtatgcATTGCGTACCTACtaccattgatgacgtcatcgaaaat
gtTTATGTCATTTTGTTCCTTATATATAGGTTTACAATTTTTGTGTGACA
GTTGAAAGTACGAAAATTAATGGGGTTGTACAAAAAAGTCCCCTATAGTT
CTGAACCCACCCCTAAAAGTACTTAGTATTGATAGGAGTTATATAGTTTC
CcatgtaatttttcaaaacatttaatcTTGATTCTATTGTATTGCTGAAA
ATCACCCTGACTcgtttgttttaaatttccacAGAGCTCTTAGTTAATTA
AAAGTTCTTAGCTTGACACACGAAAGCTGTCCCAAAAGTCATGTAACACG
CCTTTATTCACTTTAGTCAATTAGTCTGACATAACATTTCTTTCGACAGA
AGTGTTAAGATttcattttttcgttttatttttttttttcagtaatGGTA
GCCTCAATATCCAAGCGGTTAATCGTTATCTTGATGTTTCTGCTATTTAC
AGCCAGCTTGGTCTACCTAAAtgattgtaaacccagggttaGCTGATCTT
TAGGTTTTTGCAATATTTGAATTCAAGTggaaaaattttcgcgtgtacta
aTTTTCGCAAGACGAGAAATTAAAGATTTCACgtggattatatttcgcga
aagAAGTGTACCAGATGTTCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTttcattttttcgttttatttttttttttcagtgatggTA
GCCTCAATATCCAAGCGGTTAATCGTTATCTTGATGTTTCTGCTATTTAC
AGCCAGCTTGGTCTACCTAAAtgattgtaaacccagggttgGCTGATCTT
TAGGTTTTTGCAATATTTGAATtcaagtggataaattttcgcgtgtacta
aTTTTCGCAAGACGAGAAATTAAAGATTTCACgtggattatatttcgcga
aagAAGTGTACCAGATGTTCCGTGACGTCAAAAACTGAAGAAGTCATTGT
AATGCCGTTCTAGCGTCGTTAAATataataggccatttcacagtcgcaaa
gcgtaatgggtaatcaggaccactgcgcgctaataacgacttactattgg
tcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045850-exon-scaffold_102-1491911889:406985..407231 | TCONS_00045850-exon-scaffold_102-1491911889:406985..407231 | Clytia hemisphaerica | exon |
| TCONS_00045850-exon-scaffold_102-1510915933:406985..407231 | TCONS_00045850-exon-scaffold_102-1510915933:406985..407231 | Clytia hemisphaerica | exon |
| TCONS_00045850-exon-scaffold_102-1575043694:406985..407231 | TCONS_00045850-exon-scaffold_102-1575043694:406985..407231 | Clytia hemisphaerica | exon |
| TCONS_00045850-exon-scaffold_102-1491911889:409277..409638 | TCONS_00045850-exon-scaffold_102-1491911889:409277..409638 | Clytia hemisphaerica | exon |
| TCONS_00045850-exon-scaffold_102-1510915933:409277..409638 | TCONS_00045850-exon-scaffold_102-1510915933:409277..409638 | Clytia hemisphaerica | exon |
| TCONS_00045850-exon-scaffold_102-1575043694:409277..409638 | TCONS_00045850-exon-scaffold_102-1575043694:409277..409638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:406985..409638 + |
Blast
The following BLAST results are available for this feature:
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