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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045848 ID=TCONS_00045848|Name=TCONS_00045848|organism=Clytia hemisphaerica|type=transcript|length=1432bp
CGTATGATCCAAGGAGATGGCTAAATTACGACACACTCGATGATCAAAAC
AATGGAGACCAAAACTATTACCAAAAACAAGAACCAGAAGATCAATACAG
AAGCTTTGATTACCAACCAACTACCACCTCAAATACATACAAAACACAAG
ATTTTTATAATCCTACCCCAGATCCAGAAAATATTTATACACCATCATTC
AATGGTAATGCTTATCAACAGCCAAACAATGGATCTATTGTTGAGAAGAA
ACGAAAAGTTGACGAGTATGACCCAATGGCTCCCAGTTTTAGTGGCTCCT
CTACCAATCAGCCACCCACACCAAAGAAAGAGCAACCGGATCCAAGAAAA
CTCGGCCATTTTATCAGCATGCTTCAAAAGATGATTAGGCCTATACCATA
TGATTACAAGAAGATGCTACCTTATGATATCATTTGCCAGTTAGCACATG
CCATGTTGGATGGAACTGTTTTTGAAATAGCCAATGGTTTGAAGGACATT
CAAAAAATAACAGAGAAGAGCTTACATGCAAAAAGAAGCAAGCTTGTCAA
CGAACATAAAGATTTTCAATGAACGAGTGGATAAAGAACTGACTCAAATG
GATCAAAAGATTGTATTGGACTTGGATCAACAGATATCGGATCAACAAGT
CACTTTGGAGCGTGCCGGGTTACCATTGTTCTTCATCACCAATAACCCTC
AAGAAATTCGTATACAAATGTACATCTTGGAATTTATTGTCGGACTATCA
AATTCTCACACAAAACCATCTTGAGGGGAGGAGATTCGAAATATTGTGAA
GAGAATTCGTTGGAAAGGTATTTATCCTTTATTTCGTTTGAGTTCGTTTT
CTTTTATTCTATACATTGGCTCATGACAAATCATGAACAAATTGAGGCTG
TTCATTTGATTGTTAAAATAACTCGGGGAGACAATGATACGATATTGGAT
TGGATAACATTTAAGGGCAAAAGTTGCTGATGTAACCAAAAATATTCTCC
TTGGAAGTAACGCTACGTTTGATCGTTGGGAATATGCTCTGTTGAGGTTG
CATTTGGTAATCGAATGAAAGACACTTACGAAATGAATATAATAATTCAT
CACAGAGGCGGTACATCATTCACAAGAGCTTTGAGAAATCATTATTTTCA
CGTGCTTTCTAAAACCGGGTTTCCACAAACCCCGCGAACGGTTGGGCGCG
GTGCGGTGCGATCAAAATTTCCTTTTATAGCTCATTGACGTCacgaatga
attttttttgtacaCAAAGTGTGAGCTCTATCGAGCGCAACTGAGCTCTT
TTGGgagctgaaaattttcaactccCAAAAGCGTTCTCTGCGACCAGAAT
TTGATGAACCAATCAGAAGAGAGAAAATCTGCTGATTAAGcaaataaaat
atgaaaatgtacAGATTGTGCGTAAATCGATA Run BLAST on NCBI transcript from alignment at scaffold_102:370477..374214+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045848 ID=TCONS_00045848|Name=TCONS_00045848|organism=Clytia hemisphaerica|type=transcript|length=3738bp|location=Sequence derived from alignment at scaffold_102:370477..374214+ (Clytia hemisphaerica)
CGTATGATCCAAGGAGATGGCTAAATTACGACACACTCGATGATCAAAAC
AATGGAGACCAAAACTATTACCAAAAACAAGAACCAGAAGATCAATACAG
AAGCTTTGATTACCAACCAACTACCACCTCAAATACATACAAAACACAAG
ATTTTTATAATCCTACCCCAGATCCAGAAAATATTTATACACCATCATTC
AATGGTAATGCTTATCAACAGCCAAACAATGGATCTATTGTTGAGAAGAA
ACGAAAAGTTGACGAGTATGACCCAATGGCTCCCAGTTTTAGTGGCTCCT
CTACCAATCAGCCACCCACACCAAAGAAAGAGCAACCGGATCCAAGAAAA
CTCGGCCATTTTATCAGCATGCTTCAAAAGATGATTAGGCCTATACCATA
GTAAGAtcgataaatatttttgttgtcttggtatatatttttatgCTAAC
GTCAGTAACATAGTTTGTTTTGTGTTTGGGATTAATCTTTGCCATATGCG
GCTAAAGATAAACCATTACTCAGAATTTTATGCGTGTTGTGCTTTTGATG
TTTGAGATATTATGGGGCTCTATTTAAAAAATAGAACAAGATGTACAAAG
GACTCACTGTTGATGAATGTTATTACTTTTCGCTTTGACATTCtcaaaaa
tcttttgctttttttaagaatgtttgcaaaaagattttgcaataaaaaat
tgaaacaaattgTTGATGGTTTTTGGCTTTTTATATGTTCAGTGATTACA
AGAAGATGCTACCTTATGATATCATTTGCCAGTTAGCACATGCCATGTTG
GATGGAACTGTTTTTGAAATAGCCAATGGTTTGAAGGACATTCAAAAAAT
AACAGAGAAGAGCTTACATGCAAAAAGAAGCAAGCTTGTCAACGAACATA
AAGGTAAAAACTCATGTCAGGGCCATTCCAAGAAAATGTTAACCCTATTG
TAGTCTATGCCCGATATTGAACCATCTCGTATGAAGCGCTCCTAAAACCC
TCCCTATTGGTGTTTGCAGTTAGTAAAAAAGCGTGAAAGAACGTACCTCT
TCATCTGGAATAGCTACATAGTTGTTGAGCTTTCAAAATCCTTTTCGTAT
TtctttcagttttcattttgtaattaaaaaacgAAATCTAGTACATAAAC
AAATGGAAATTGATTgcgacaatatcatgtatacgaATGTCAAGTATATT
GTTTATTCACTACCATAAGATGGATCAGAAATGATCAGGGGAACCTTATG
TTTATGATATTCTCACATTCATGCTCTTTTAAGAGCATTTCTTAAATGGT
TTTcataatatctatttttctcTTTAACTTTTAAGCTATGAAGCAAGAGA
TCAAGAAGCGACACAAAACCGAGATTGAGCATTCACAGTCAAGACCACAT
CAGATTCTGGTTTATGAGAAAAAGCATGCTGAAGAGCTGAAGGTAGGAAG
AAGTGGTCCACTGGTAGCCTCCTAACCGGATTGTTGTGGGTTTGAGCCCC
ATGCAAATTAACCATGTAACGAAGTCACCTCTCGCATCACTAACACTGGC
GGGCGGCTGGCTACGGAAAGAACCAACCCTTAGGGTGGATGTGAGTTCAG
TTCCTAAACATAAATCAAGTacataaaatgaaataaaatcagataaaata
aataaactagGGTAACTCTCCGGAAGCTAAAAATGACTGACTAGATTGAT
AGTAGGAATGCTTTAAtaggattttttgaaatttagtacCCCAGCTCAAT
GTtggtattgtcattttataatggATTATATTGAAACCTACATTTATTTT
GCTACCCACCAACGTTGGTGGAGATAGCTTACTGCATTATATGAAAGTTT
TAAGTATAATTATAAATTAGTGTATTGGAGGGGTGATCCAACATTACTAG
AAAGGCTATGGATATGagattatttttatataaagtcgTAGATCTCTAAG
TCAGTTatttgttttttctgctcaGATTTTCAATGAACGAGTGGATAAAG
AACTGACTCAAATGGATCAAAAGATTGTATTGGACTTGGATCAACAGATA
TCGGATCAACAAGTCACTTTGGAGGTTCATAGTTTTTTCTGGAAGTCTTC
TTTTAACAGCTCTTATTTTTATTGTATTGTTTAGCGACCGTAGTGNGTCT
TATCTGGAAGTCTTCTTTTAACAGCTCATATTTTTATTGTATGTTTAGCG
AACGTatctcagtggtagagcatccggctagccgggtcataccaaatatt
ctcaaaatggtacttaaatcctctctgcttgatgctcagcaattaagaga
aggatcaagggtaagtgaagaaatccagggagaaagagtgacgccctccc
ctacctATACTACAAGCAGGACAATAGTTTTGGTGGTGGAATGAGGTGCT
CTGTGATCAGTAGCGTAGCTAATAGGAATGCCAAATTCGTATTGGAAAAA
GCGAATTGTGTTATAAAAATCTATTCTGCTCAAATTCTGCACaactcttg
gctacgctactacTAACGTCACATGTTCCTAAGATTATTTAGTTTGACCT
GTCTCTGGTTTCTTTTTTCGTCCAAACAGGGAGTGTTGAAATatgtttga
aataaatatatataattaatatttttgaaactgTTCGCAAAATAGTAGTG
TTTCAGCAAAGAGACGAACTTTTTatccaaaaatccaaatttgccCTCGT
TTgagtacttttttatttttcctgagtaaaaagacaccaaagaTCCTCGT
CTTTCAATTACTCCTAAAACTTGAAGTGTTGTTGCAAAAAACTACTTCag
tatcaaaattaattttaacgGATTTTTTTTGGGATTGAGTAAATGTCGTT
TAAAATGGAGGCcctcaaaaaagttttgatacATTTCTAGAGAAGTGTGT
TTATATGGATAAACTCTACCCgatcaaaaaaaaaagcaacaaaagaTCGT
TCTTTCTTTTGTATAGCGTGCCGGGTTACCATTGTTCTTCATCACCAATA
ACCCTCAAGAAATTCGTATACAAATGTACATCTTGGAATTTATTGTCGGA
CTATCAAATTCTCACACAAAACCATCTTGAGGGGAGGAGATTCGAAATAT
TGTGAAGAGAATTCGTTGGAAAGGTATTTATCCTTTATTTCGTTTGAGTT
CGTTTTCTTTTATTCTATACATTGGCTCATGACAAATCATGAACAAATTG
AGGCTGTTCATTTGATTGTTAAAATAACTCGGGGAGACAATGATACGATA
TTGGATTGGATAACATTTAAGGGCAAAAGTTGCTGATGTAACCAAAAATA
TTCTCCTTGGAAGTAACGCTACGTTTGATCGTTGGGAATATGCTCTGTTG
AGGTTGCATTTGGTAATCGAATGAAAGACACTTACGAAATGAATATAATA
ATTCATCACAGAGGCGGTACATCATTCACAAGAGCTTTGAGAAATCATTA
TTTTCACGTGCTTTCTAAAACCGGGTTTCCACAAACCCCGCGAACGGTTG
GGCGCGGTGCGGTGCGATCAAAATTTCCTTTTATAGCTCATTGACGTCac
gaatgaattttttttgtacaCAAAGTGTGAGCTCTATCGAGCGCAACTGA
GCTCTTTTGGgagctgaaaattttcaactccCAAAAGCGTTCTCTGCGAC
CAGAATTTGATGAACCAATCAGAAGAGAGAAAATCTGCTGATTAAGcaaa
taaaatatgaaaatgtacAGATTGTGCGTAAATCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045848-exon-scaffold_102-1491911889:370477..370876 | TCONS_00045848-exon-scaffold_102-1491911889:370477..370876 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1510915933:370477..370876 | TCONS_00045848-exon-scaffold_102-1510915933:370477..370876 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1575043694:370477..370876 | TCONS_00045848-exon-scaffold_102-1575043694:370477..370876 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1491911889:371219..371379 | TCONS_00045848-exon-scaffold_102-1491911889:371219..371379 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1510915933:371219..371379 | TCONS_00045848-exon-scaffold_102-1510915933:371219..371379 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1575043694:371219..371379 | TCONS_00045848-exon-scaffold_102-1575043694:371219..371379 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1491911889:372452..372550 | TCONS_00045848-exon-scaffold_102-1491911889:372452..372550 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1510915933:372452..372550 | TCONS_00045848-exon-scaffold_102-1510915933:372452..372550 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1575043694:372452..372550 | TCONS_00045848-exon-scaffold_102-1575043694:372452..372550 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1491911889:373443..374214 | TCONS_00045848-exon-scaffold_102-1491911889:373443..374214 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1510915933:373443..374214 | TCONS_00045848-exon-scaffold_102-1510915933:373443..374214 | Clytia hemisphaerica | exon |
| TCONS_00045848-exon-scaffold_102-1575043694:373443..374214 | TCONS_00045848-exon-scaffold_102-1575043694:373443..374214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:370477..374214 + |
Blast
The following BLAST results are available for this feature:
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