TCONS_00045814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045814
Unique NameTCONS_00045814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045814 ID=TCONS_00045814|Name=TCONS_00045814|organism=Clytia hemisphaerica|type=transcript|length=344bp
GTGATATTCATACTCGTATCTCTTTGAAACGTTTCGAATTGTTCGTATGC
AGTAAACATTGCCTGATCTTTTGACACTGCATAGAGTTCCCTCAATTTGG
TTATAAGCACATCTAAACCCTCTTCGACGTTTAGCTGTTCTTTCGTTAAT
GTTGCACATGCTTGGAGAACCTTCGGGGATAAACTGAGATACAACATAGG
TCCTTGTTTTGTTTTAGCTAAATCGGTTACTAACTGCcacatttcaattt
catgtaACCAATGTTCAAAGTCTCCATCTTCGGAGAACGGGGGCAATCCA
TACTTTTGCCCTATCGAAACAACTCCTGCCATTTTCAACAATTA
Run BLAST on NCBI

protein sequence of TCONS_00045814-protein

>TCONS_00045814-protein ID=TCONS_00045814-protein|Name=TCONS_00045814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MAGVVSIGQKYGLPPFSEDGDFEHWLHEIEMWQLVTDLAKTKQGPMLYLS
LSPKVLQACATLTKEQLNVEEGLDVLITKLRELYAVSKDQAMFTAYEQFE
TFQRDTSMNI
Run BLAST on NCBI

transcript from alignment at scaffold_101:51757..52100

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045814 ID=TCONS_00045814|Name=TCONS_00045814|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at scaffold_101:51757..52100 (Clytia hemisphaerica)
TAATTGTTGAAAATGGCAGGAGTTGTTTCGATAGGGCAAAAGTATGGATT
GCCCCCGTTCTCCGAAGATGGAGACTTTGAACATTGGTtacatgaaattg
aaatgtgGCAGTTAGTAACCGATTTAGCTAAAACAAAACAAGGACCTATG
TTGTATCTCAGTTTATCCCCGAAGGTTCTCCAAGCATGTGCAACATTAAC
GAAAGAACAGCTAAACGTCGAAGAGGGTTTAGATGTGCTTATAACCAAAT
TGAGGGAACTCTATGCAGTGTCAAAAGATCAGGCAATGTTTACTGCATAC
GAACAATTCGAAACGTTTCAAAGAGATACGAGTATGAATATCAC

Coding sequence (CDS) from alignment at scaffold_101:51757..52100

>TCONS_00045814 ID=TCONS_00045814|Name=TCONS_00045814|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_101:51757..52100 (Clytia hemisphaerica)
ATGGCAGGAGTTGTTTCGATAGGGCAAAAGTATGGATTGCCCCCGTTCTC
CGAAGATGGAGACTTTGAACATTGGTtacatgaaattgaaatgtgGCAGT
TAGTAACCGATTTAGCTAAAACAAAACAAGGACCTATGTTGTATCTCAGT
TTATCCCCGAAGGTTCTCCAAGCATGTGCAACATTAACGAAAGAACAGCT
AAACGTCGAAGAGGGTTTAGATGTGCTTATAACCAAATTGAGGGAACTCT
ATGCAGTGTCAAAAGATCAGGCAATGTTTACTGCATACGAACAATTCGAA
ACGTTTCAAAGAGATACGAGTATGAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029286XLOC_029286Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045814-proteinTCONS_00045814-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045814-exon-scaffold_101-1491911889:51757..52100TCONS_00045814-exon-scaffold_101-1491911889:51757..52100Clytia hemisphaericaexon
TCONS_00045814-exon-scaffold_101-1510915933:51757..52100TCONS_00045814-exon-scaffold_101-1510915933:51757..52100Clytia hemisphaericaexon
TCONS_00045814-exon-scaffold_101-1575043694:51757..52100TCONS_00045814-exon-scaffold_101-1575043694:51757..52100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:51757..52100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.40488	1.10668	2.64393	1.16022	0.652074	1.10839	0.722545	0.885816	0.8403	1.75663	1.83683	1.87822	0.363018	0.165839	0.204931	0	0.404413	0.558718	0.319638	1.01635	1.86711	0.340397	0.323202	0.89931	1.14371	0.720694	1.15372	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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