TCONS_00045799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045799
Unique NameTCONS_00045799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045799 ID=TCONS_00045799|Name=TCONS_00045799|organism=Clytia hemisphaerica|type=transcript|length=1015bp
GGTTGGTAAAATAACAGGGCGCTATTACCGGAAGTATCAATAAGGCGGGT
AAGGCAATATTCGGAAAGATCAGTTTATCGACATTCACTTTTCAAAATGG
CGTCGCAAAATACATGTGTGAAACAGGTTCTCATTCACCCAACTGCTTTA
TTCACGATAATCGATAGTTATGAAAGGAGAAACGAAGATGCAAAAAGAGT
AATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAAGTTA
CAAACTGCTTCACAGTCCCTCACGTAGAAACACAAGATGAGGTTGCACTC
GATAAAGAGTATGCCATATCAATGCTGGATTTACACAAACAAGCATCAAG
GACTGAAGATATTGTCGGATGGTTTGCTACAAGTGACGACGTTACAGACC
ATTCTACATTGATTCACGAGTATTATTCCATTGCTACTGATAATCCAATT
CACTTCACTGTTGACACACAAATGAAAAACGGTAGAATGGCTATGAAAGC
TTACGTCAGTTCGACAATGGGGGTACCTGGAGGAACAACTGGTCTCATTT
TCACTCCTATTCCACATCAAATCAAATACGAAAAAGCTGAAGCTGTCGCA
GTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAAGAGCCCAGCTGTTCT
ACAGAACGGTGTGCACCACGTATCACGATCAACAGATGTTTTGGTTGACC
GTCTAAAAGAAACTTTACAATACGTGAAAGAAGTCGTGAATGGTGATAGA
GTAGGGGATAACGAGATCGGACGAAAATTGATGTCAATCGTTGGTTCCGT
TCCACAAATGGAAGCGTCGCAAGTCGAACAAATGATGAATAATAATATGC
AGGATCTGCTGATGGTATTATACTTGTCCAGTCTAACGAAATCCCAACTT
TCCGTTGGTAACAAACTCAATAGCATCATGTAATTTTCTGGTTCATTTTA
TATaagagaaaatagaaaaattatgaaattcatCGCAAACTGTATCATAT
TTGATTTCGTGTCCA
Run BLAST on NCBI

protein sequence of TCONS_00045799-protein

>TCONS_00045799-protein ID=TCONS_00045799-protein|Name=TCONS_00045799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MASQNTCVKQVLIHPTALFTIIDSYERRNEDAKRVIGTLLGRVEKNGVVE
VTNCFTVPHVETQDEVALDKEYAISMLDLHKQASRTEDIVGWFATSDDVT
DHSTLIHEYYSIATDNPIHFTVDTQMKNGRMAMKAYVSSTMGVPGGTTGL
IFTPIPHQIKYEKAEAVAVETFSRNKGGSKSPAVLQNGVHHVSRSTDVLV
DRLKETLQYVKEVVNGDRVGDNEIGRKLMSIVGSVPQMEASQVEQMMNNN
MQDLLMVLYLSSLTKSQLSVGNKLNSIM
Run BLAST on NCBI

transcript from alignment at scaffold_101:20486..32414+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045799 ID=TCONS_00045799|Name=TCONS_00045799|organism=Clytia hemisphaerica|type=transcript|length=11929bp|location=Sequence derived from alignment at scaffold_101:20486..32414+ (Clytia hemisphaerica)
GGTTGGTAAAATAACAGGGCGCTATTACCGGAAGTATCAATAAGGCGGGT
AAGGCAATATTCGGAAAGATCAGTTTATCGACATTCACTTTTCAAAATGG
CGTCGCAAAATACATGTGTGAAACAGGTTCTCATTCACCCAACTGCTTTA
TTCACGATAATCGATAGTTATGAAAGGAGAAACGAAGATGCAAAAAGAGT
AATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAAGTTA
CAAACTGCTTCACAGTCCCTCACGTAGAAACACAAGATGAGgtataattt
tttacatttttttatcccATCAACATCATTCTATGTTTCTGTGTTACATC
TTGTTTCTTCGATATTCTGAATGATTTGTTTGTGCTGAAGAATTTGTGAA
TAAATAAATGTTTAGCCAGTAGCTCAAAATAGGCAGGGAAGGTGCAAGAA
TAATCCTCATTCGCAGGCTGACAGTAAATAGCAGTGTGGCTGTAACCTGA
TAACaaattgtgtattttctggcccagtatgctgaagctctaaagacgtg
GGCGAAAAAAAACCACGTAGAATTTTGTTTAAGAGGAACAGGTCCGAGTG
CAATGTCGACAGGGAAGAGGgtcacaagtgttacgcgtaagccaaatcgc
gtattacgaacaacctctgaATTGCTGAGtacaggaagaaaaaaatctaa
attcaaaatggcggccaagcccacacagtgtagacctaactcttcacaca
aaaattacgggaaacgcatgtttggactttgtaccctatgctgcactcaa
gcacttaagccaaagtcccgcaaaggcgggNNNNNNNNNNNNNNNNNNNN
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tttttccttttttttgcaaaagttctaggaatgaaaataaagggataatg
ataattgaatactatccattgatgatccgcggcactatcgtaaagctaga
aagcttcgcgtactcttcgcttgagaaaatgattgacagattgaagtttt
tcaatcctcggaccgcgctaaaaatggtagactgagctgtgatagatcat
ttcgatggaagttgttggaatgtttacaaggctcttgacagaaatcgttt
gttttattgtcaatgatgacagtgcggttattaattttgttagatcttac
aaattgatgtttgtaagtgcacttaatagttttgattcccattgaagaat
catattctggttttcatgttattagatgctgttttagagNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaaaaaccc
aacatagaacaggttTATTTTGTAATGCAGATTATGATGGTGTGTGAatc
attttgaaattctatgttaGGAATTTTTCTTAATGCCTCGTAACTATGCA
TGGGGTGCCCATTGCTAAGAACTTATATTACGGAAAGATTCCTCAAAAAT
AACGATTTTCATAGTAActcaaatattgatatttaACTGTACTGAAACAC
AGAGGCAAAGAGgtcatttatttaagaaagggctTTTACAATAAGATGgt
tttatattttgaataatttataCTTTATAAGGCCATCAACAATTttattt
gaagtttgtttttaaaaacacaacccccaatacgagatgGTTATTTCATA
ATTTCCCTTTTTCTCTTAATAAAGAGCCATTTTCTGATAGTCTACACAga
agacagctccaggcttttttTATGCcctactcttggtctataggtaCTGC
AGTTAATGttgattgcattcaaaaatagaaccccaaaaagtgaggttttc
aatcacaacctttttagcccacagcgttgacattcttgtggctgctgtgt
agtacaaaattccataaaataaggaaattgatgagctttccaaaaatgtg
gccCTCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACCCTGCggctgtaccccccccccctgctttagaaccaatattgtgaagt
ttcgtttgaaaacagttatttttaaaaagatattcaaatttctttttttt
tgctgtttttgaaaacctcacacaatttttgaatgccatcttttattttt
ttcttatttccaatttaattataattttatGCAAATTTTATATTCTATGA
ATAATTCTTTTACTATACTtaacttttctcctttttattatTGTACTGTA
AGAATTTTTGTTTCGTTCCTCTAATTAGTATAATTTTTCGCGAAGATAGC
ACTTtcagctgggatctgggagtctggatTGAGGATGGGAATTTGGTGgt
taggtgggacctgaatttttaggtgggaccttgagcccccttgcacacta
tgccCAAGATTGTACAGCtatggtgaaaatttgaaggaGATATAAAGACC
CCCATGGTTCCACTTTATACTAAGGTTTTCTGATTCTTAGGTGCATCtgc
ttttaaaataaaagaatgcttaaaacacagctgattggcttaggttttga
aactctctattgtttcatcaaTCCTCAGTGCACAAGCAACCGTAACTTCT
TGTAATGCCAACATACCGTGTCTAATTCCGTCATAGCGACTCtggtcttt
taaaaaaaatgttcataAATAAAACCTCCTGAGTAAGCTGTTTGAAAATC
ACCCTAACTACTTTGCAGACCATGTGCACTgttcttgttttgaatattga
atttctgAGGATACATTCCTTAACTTCGTGTAATGTTGACGCATTTTGTC
ATAGCAAAAATCCCAACaggagttttacgctcaaaAGAAATTTAAGTTGT
CTAGATTCCATGGcctaaaatcacaaaaaacaaaaaaaatgcttTGAAGC
TCGAAATCTCCTAAGGCCCCTACTGCCACATGGTTTTTGCTGTTTTGAAG
AGCCTTCAGTATGTATTATCATTTTACGAAAGAAAATAATGTGGCAGTAA
GACTTCGGGCAGAGTAAAATTGACTTTTTGCACTACTTTCTCATTTTTTG
GTAATTCATAATGGCGAAGGCTCTAGGTTTAAGTGACTTGGAAGGAGAGC
TTGCCTAAGCATAAGCTTCTTTAGACCTGCAGAAGACTGAGAAAATAGGC
TTTTTTAGCTTGTGTTTTGCTTAGGATTGCCCTTAATAACTGCATAGCAA
GCTTTTTGCAGCCTTTGTTCCTCAAATTTTGTTCTATATTATATCAATGA
AAAAAGCAAGTCTGCTGAAGCCTTCTATTGTGAGATGCTTCTTGAAATTG
CCATCTCGTCATtcaattactctcgggtacctaatagccggggggattgg
aataagtgaggggaggttggaaaaaatctcaaaacttaataagcgggggg
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gtggaaaattttcgaaaaattaattaacgggggggacggctattaggtac
ccgagagtagtcgAATTTGGACCATAAAGCTGGGGAAAATaagattttcg
caaaattgtttgtcgcaaaaaataaattcagaCAGATATCTGGAATTGAA
aacctattgttttatttgcgATAGGGCGAAAGAAATAagtgatgaaaatg
aaaacgttttcattctatattgtttattttttttttacattaaaaagaac
aatagatTCACTCAGCTTAAATGCCTGAATTTTTGTACTGCGTAACATCG
TGAGTTTTCGATTGTTTAGAAAGCCCTAGAGGTTGCTCCTTCAGGataca
aaaaataattcacgagtatatttttttggaaagttcaGGATTAGATTATT
AGATTTTCCCTGGTTTATGGGTACAAAAGGtctaagaaaaacttaaaaat
aatgaatgaaaaatgaaattttcgaaaCAACTTTAGATTAGCCGCGtgat
taaaaatgttttaacttATTATTTATAGGGAAACGAAACAATTAAATCCC
AAAAACATGCGattttatgtatattttggtaTTTCAGGGTTTGAAAACAG
CACCGAAAGACATTACTGGTGAAACCTAAATTATATTATTTCTAATTATC
ATCTACTCAAGGGTTCGAAATAACCGTTTAACATCAGACATTTTCTGAAC
CAAATTGCTTCTGGTCTGGCCAAAAATCATAGTTTTTAATCTAAAGCAAG
ACTGGTCTGGTCCACTCGAAATTTTTACTACTATTTCATTATCAGAATAT
GACCATATAAGATACTTTAGATGGGATAGCTTTTATGTGTGGTAAAGAAA
GAAGAGTGAGATAGGGACActaaaataaacattttcagCCATGCTGAATT
CTATCTGTCAAACTGCTACTTTTGGGATTCTGCCCAAGTTTCTCACCTCT
TAGATACTACTGCTACCTTGACCAGACTGGCTACCTTGTTTCAATGAGCT
ATTCATCTGAGCTAAGTTGGCGTCGACTGAGGATCAAACCCTAAACCCAA
AACCCTTGGATTGTAGTGCAAATGATCTACCTTCTTGTCAAAAAGTCTAG
ATTGGTATAATCAACATGCATGATGAAAGTTTTCCTTTTAACTCTAATTT
TGTAGGTTGCACTCGATAAAGAGTATGCCATATCAATGCTGGATTTACAC
AAACAAGCATCAAGGACTGAAGATATTGTCGGATGGTAAGGCCATTCGTT
ATAAGATAATTTACAATGTCCGTCTGTATGTTTCTTCACACTGGCAATAA
GATTTTCGACGTTAGAATTTGAACAGTTTTCCAACACTTCAACTTCGAGG
GGGTCGTTTCGGCAACTGAGATTATATTTAAACtttatgaatttcttttt
gtaGGTTTGCTACAAGTGACGACGTTACAGACCATTCTACATTGATTCAC
GAGTATTATTCCATTGCTACTGATAATCCAATTCACTTCACTGTTGACAC
ACAAATGAAAAACGGTAGAATGGCTATGAAAGCTTACGTCAGGTACATAG
TTTGAATTTGACTCTTTTTTAGTATGGAGCTTTCCTCTAATAACGCGGGC
ATCATAATAGTGAGAGCCACTATGTTCTGAAAACATCCTTGCAGTGCACA
GACTTGATagaagcaaactaacttttttaaataagatcacaaaaatgaGT
GGTGAGAAAAGTTTTGACCATTCTGCTAGTTCCAATGTGACGTTATCACC
Tttgctggggcttgaaaatgaaagtaaaaattagaagctcaaatgaaaga
tatccaaggattccaaaaaaGATCATAAAATATATATCTGAAATCGATAT
TTGAGAAGCTATTAAAGAAAATAGCCCAAAAATGTCatagatgacgtcat
cgatgtttttttcaatcaaaaacattatttataagaatgccCACGATTAA
gaatggttcaattttcaacgAAACTGGTTTTGGTAGCCGGAACTTTCTTA
AAATCGCCGGGAAAATGATTTTTCTTAGATCACTAAGAAACCGTCCGCTC
GTCCGCTCTTTGTTCGCGATCTTTTCCATTATCGCTTTAAACTACAGTCG
ACTTTCCATAACTTGAACCTCCACTCGATTATCTCTATAAACTCGAACGC
TTTTTCCGGTCTCTTGAGGAGATTCTTAGGCTattctctataactcgaat
ttccGTAACTCGAACAATTACTCAAAAATCTTTCGATTGGGTAGGAAATA
AGAAATCTAGGTTTCCCATCCATTTTTCACAAGAGGAACACTTTTATACC
GTTTTTAAATagttttgcttttgttttctaCCTTTTATACATTGAACTCA
ACTAAGTTAGTTTAACATGCTGAGTTTGAATCGAGTTTCTGCAACCCTAG
CGGTGTTGCTTTTGTTTATTCCCAAAACTTCGATTTCCAAAAAATCCTTT
CATATGGGGCTCCTTTCCTCTAAAAACCAACGGAAAGCCAGTGTGAAACA
AGCTTCATGTTTTCAAGCTTACTTACCTCTATGCCATACATTATCTTTCC
TTTTTCGTTcgaacattttcatcttcattcagcATTGTTTCTGACTATGT
atctcaggtaggtccattcagcacgTTGCTTGTTATTTTTCAGTTCGACA
ATGGGGGTACCTGGAGGAACAACTGGTCTCATTTTCACTCCTATTCCACA
TCAAATCAAATACGAAAAAGCTGAAGCTGTCGCAGGTTAGTTTCAAGTAA
TCATCCCATAGTGTGACACCGCCTATTTTGATCTAAACAACGGTAAAATC
AAGCAATTAGCGGTTTCCATAACTGAGAAGCTACCTTGACCAATCCCATG
CCGAGGGTAGGGTTCTTGTAGCAAGTCTTACTTCACTTGGGGTAAGGCCA
ACACAGCGCAACCTGGTTGCCAAAGACCTGTGGTTGACCCACTTATTGCA
GAAGTGCTTACTGGTACTCCGACCGAAATCGGATAGAGAGCATAgttcgc
accccccccccctttatgaaggggggggggtagcgatgttcagaaaatct
cagaaaggggggggtaagagaattttttCTAGAAAGGGGGAAGTTTTTAG
AAANTGGCTCTGGTCACGAGCTGTATATACTGTAATATAGAGAGATAGAT
GATATAATATCACACCTGCGGGAATCGAATCTGGGCCGTTCGCTTGGCGA
CACAGTGGCTAGACCTCTGGGCCGACCTGACGGTAATACAGGCTTCAGAA
TTGGGGTGGATGTTCGATTTCAATGTAAAGAATTTTGCAattcatctttt
ttttaataGTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAAGAGCCCA
GCTGTTCTACAGAACGGTGTGCACCACGTATCACGGTATACAAATCACTT
TAAAGCTCCTTTCTTCAAATTGACAATTTCTAATATCTATTCCAAagctt
tttagtttttttcggTTGTGGCCTCTGGGGTAGCTTCTAACGTCAACtgc
agaaataaaattgaaatgaaatgaaattagaAATTAGAACGCGTTTCCAT
ATTTTTCTCGTAGATCAACAGATGTTTTGGTTGACCGTCTAAAAGAAACT
TTACAATACGTGAAAGAAGTCGTGGTGAGTGGTCATGTTCTAATTATTCA
GTCGATGTTTTACATTAGAACCTCTTGACAAAAGCTCCCGTTCCAAAGGT
GCGATTTTATTGGTTTAGCTTCATCACGCACGAACAGTACCCCGTATGAA
ATCTCACTCTTTCGCATTCTTCTTTATAGAATGGTGATAGAGTAGGGGAT
AACGAGATCGGACGAAAATTGATGTCAATCGTTGGTTCCGTTCCACAAAT
GGAAGCGTCGCAAGTCGAACAAATGATGAATAATAATATGCAGGTTTGTG
TGAATTATGTGAAATGTTTGTTTGAAATGACTTCTCGGAAGTCTCAGCTG
CCTAATAAATGGATAGGTTGGGGAAAAAATGGAGCGGGGGTACTCagggt
tttgctttgtttttggtaggctgacgaatgaaaaattaactctggcgatt
tctagattctaggccggCGAATTCTTAGTAAGCGCGGTGTATTAATTAGC
GTAAATATGTACTTGATGCGGTGAACCGAACTTTTCGACGTTCTGCTATT
CGATtcgctctattattcgataacaTTGAAAGCCAACGTCAACATGAAGC
ACtcgtaaacgacgctctacAATTCGAATtcaattctttaaagaaaactt
GTAGGCAGTAGCGAACTGCAGTCTGGCTGTCTGAGCTAATTTATTTTTCA
CCTTTCACATTTTCAGGATCTGCTGATGGTATTATACTTGTCCAGTCTAA
CGAAATCCCAACTTTCCGTTGGTAACAAACTCAATAGCATCATGTAATTT
TCTGGTTCATTTTATATaagagaaaatagaaaaattatgaaattcatCGC
AAACTGTATCATATTTGATTTCGTGTCCA

Coding sequence (CDS) from alignment at scaffold_101:20486..32414+

>TCONS_00045799 ID=TCONS_00045799|Name=TCONS_00045799|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at scaffold_101:20486..32414+ (Clytia hemisphaerica)
ATGGCGTCGCAAAATACATGTGTGAAACAGGTTCTCATTCACCCAACTGC
TTTATTCACGATAATCGATAGTTATGAAAGGAGAAACGAAGATGCAAAAA
GAGTAATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAA
GTTACAAACTGCTTCACAGTCCCTCACGTAGAAACACAAGATGAGGTTGC
ACTCGATAAAGAGTATGCCATATCAATGCTGGATTTACACAAACAAGCAT
CAAGGACTGAAGATATTGTCGGATGGTTTGCTACAAGTGACGACGTTACA
GACCATTCTACATTGATTCACGAGTATTATTCCATTGCTACTGATAATCC
AATTCACTTCACTGTTGACACACAAATGAAAAACGGTAGAATGGCTATGA
AAGCTTACGTCAGTTCGACAATGGGGGTACCTGGAGGAACAACTGGTCTC
ATTTTCACTCCTATTCCACATCAAATCAAATACGAAAAAGCTGAAGCTGT
CGCAGTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAAGAGCCCAGCTG
TTCTACAGAACGGTGTGCACCACGTATCACGATCAACAGATGTTTTGGTT
GACCGTCTAAAAGAAACTTTACAATACGTGAAAGAAGTCGTGAATGGTGA
TAGAGTAGGGGATAACGAGATCGGACGAAAATTGATGTCAATCGTTGGTT
CCGTTCCACAAATGGAAGCGTCGCAAGTCGAACAAATGATGAATAATAAT
ATGCAGGATCTGCTGATGGTATTATACTTGTCCAGTCTAACGAAATCCCA
ACTTTCCGTTGGTAACAAACTCAATAGCATCATGTAAATGGCGTCGCAAA
ATACATGTGTGAAACAGGTTCTCATTCACCCAACTGCTTTATTCACGATA
ATCGATAGTTATGAAAGGAGAAACGAAGATGCAAAAAGAGTAATTGGAAC
CCTCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAAGTTACAAACTGCT
TCACAGTCCCTCACGTAGAAACACAAGATGAGGTTGCACTCGATAAAGAG
TATGCCATATCAATGCTGGATTTACACAAACAAGCATCAAGGACTGAAGA
TATTGTCGGATGGTTTGCTACAAGTGACGACGTTACAGACCATTCTACAT
TGATTCACGAGTATTATTCCATTGCTACTGATAATCCAATTCACTTCACT
GTTGACACACAAATGAAAAACGGTAGAATGGCTATGAAAGCTTACGTCAG
TTCGACAATGGGGGTACCTGGAGGAACAACTGGTCTCATTTTCACTCCTA
TTCCACATCAAATCAAATACGAAAAAGCTGAAGCTGTCGCAGTGGAGACC
TTCTCAAGAAATAAGGGTGGATCAAAGAGCCCAGCTGTTCTACAGAACGG
TGTGCACCACGTATCACGATCAACAGATGTTTTGGTTGACCGTCTAAAAG
AAACTTTACAATACGTGAAAGAAGTCGTGAATGGTGATAGAGTAGGGGAT
AACGAGATCGGACGAAAATTGATGTCAATCGTTGGTTCCGTTCCACAAAT
GGAAGCGTCGCAAGTCGAACAAATGATGAATAATAATATGCAGGATCTGC
TGATGGTATTATACTTGTCCAGTCTAACGAAATCCCAACTTTCCGTTGGT
AACAAACTCAATAGCATCATGTAAATGGCGTCGCAAAATACATGTGTGAA
ACAGGTTCTCATTCACCCAACTGCTTTATTCACGATAATCGATAGTTATG
AAAGGAGAAACGAAGATGCAAAAAGAGTAATTGGAACCCTCCTTGGTAGA
GTCGAAAAAAATGGAGTTGTTGAAGTTACAAACTGCTTCACAGTCCCTCA
CGTAGAAACACAAGATGAGGTTGCACTCGATAAAGAGTATGCCATATCAA
TGCTGGATTTACACAAACAAGCATCAAGGACTGAAGATATTGTCGGATGG
TTTGCTACAAGTGACGACGTTACAGACCATTCTACATTGATTCACGAGTA
TTATTCCATTGCTACTGATAATCCAATTCACTTCACTGTTGACACACAAA
TGAAAAACGGTAGAATGGCTATGAAAGCTTACGTCAGTTCGACAATGGGG
GTACCTGGAGGAACAACTGGTCTCATTTTCACTCCTATTCCACATCAAAT
CAAATACGAAAAAGCTGAAGCTGTCGCAGTGGAGACCTTCTCAAGAAATA
AGGGTGGATCAAAGAGCCCAGCTGTTCTACAGAACGGTGTGCACCACGTA
TCACGATCAACAGATGTTTTGGTTGACCGTCTAAAAGAAACTTTACAATA
CGTGAAAGAAGTCGTGAATGGTGATAGAGTAGGGGATAACGAGATCGGAC
GAAAATTGATGTCAATCGTTGGTTCCGTTCCACAAATGGAAGCGTCGCAA
GTCGAACAAATGATGAATAATAATATGCAGGATCTGCTGATGGTATTATA
CTTGTCCAGTCTAACGAAATCCCAACTTTCCGTTGGTAACAAACTCAATA
GCATCATGTAAATGGCGTCGCAAAATACATGTGTGAAACAGGTTCTCATT
CACCCAACTGCTTTATTCACGATAATCGATAGTTATGAAAGGAGAAACGA
AGATGCAAAAAGAGTAATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATG
GAGTTGTTGAAGTTACAAACTGCTTCACAGTCCCTCACGTAGAAACACAA
GATGAGGTTGCACTCGATAAAGAGTATGCCATATCAATGCTGGATTTACA
CAAACAAGCATCAAGGACTGAAGATATTGTCGGATGGTTTGCTACAAGTG
ACGACGTTACAGACCATTCTACATTGATTCACGAGTATTATTCCATTGCT
ACTGATAATCCAATTCACTTCACTGTTGACACACAAATGAAAAACGGTAG
AATGGCTATGAAAGCTTACGTCAGTTCGACAATGGGGGTACCTGGAGGAA
CAACTGGTCTCATTTTCACTCCTATTCCACATCAAATCAAATACGAAAAA
GCTGAAGCTGTCGCAGTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAA
GAGCCCAGCTGTTCTACAGAACGGTGTGCACCACGTATCACGATCAACAG
ATGTTTTGGTTGACCGTCTAAAAGAAACTTTACAATACGTGAAAGAAGTC
GTGAATGGTGATAGAGTAGGGGATAACGAGATCGGACGAAAATTGATGTC
AATCGTTGGTTCCGTTCCACAAATGGAAGCGTCGCAAGTCGAACAAATGA
TGAATAATAATATGCAGGATCTGCTGATGGTATTATACTTGTCCAGTCTA
ACGAAATCCCAACTTTCCGTTGGTAACAAACTCAATAGCATCATGTAAAT
GGCGTCGCAAAATACATGTGTGAAACAGGTTCTCATTCACCCAACTGCTT
TATTCACGATAATCGATAGTTATGAAAGGAGAAACGAAGATGCAAAAAGA
GTAATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAAGT
TACAAACTGCTTCACAGTCCCTCACGTAGAAACACAAGATGAGGTTGCAC
TCGATAAAGAGTATGCCATATCAATGCTGGATTTACACAAACAAGCATCA
AGGACTGAAGATATTGTCGGATGGTTTGCTACAAGTGACGACGTTACAGA
CCATTCTACATTGATTCACGAGTATTATTCCATTGCTACTGATAATCCAA
TTCACTTCACTGTTGACACACAAATGAAAAACGGTAGAATGGCTATGAAA
GCTTACGTCAGTTCGACAATGGGGGTACCTGGAGGAACAACTGGTCTCAT
TTTCACTCCTATTCCACATCAAATCAAATACGAAAAAGCTGAAGCTGTCG
CAGTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAAGAGCCCAGCTGTT
CTACAGAACGGTGTGCACCACGTATCACGATCAACAGATGTTTTGGTTGA
CCGTCTAAAAGAAACTTTACAATACGTGAAAGAAGTCGTGAATGGTGATA
GAGTAGGGGATAACGAGATCGGACGAAAATTGATGTCAATCGTTGGTTCC
GTTCCACAAATGGAAGCGTCGCAAGTCGAACAAATGATGAATAATAATAT
GCAGGATCTGCTGATGGTATTATACTTGTCCAGTCTAACGAAATCCCAAC
TTTCCGTTGGTAACAAACTCAATAGCATCATGTAAATGGCGTCGCAAAAT
ACATGTGTGAAACAGGTTCTCATTCACCCAACTGCTTTATTCACGATAAT
CGATAGTTATGAAAGGAGAAACGAAGATGCAAAAAGAGTAATTGGAACCC
TCCTTGGTAGAGTCGAAAAAAATGGAGTTGTTGAAGTTACAAACTGCTTC
ACAGTCCCTCACGTAGAAACACAAGATGAGGTTGCACTCGATAAAGAGTA
TGCCATATCAATGCTGGATTTACACAAACAAGCATCAAGGACTGAAGATA
TTGTCGGATGGTTTGCTACAAGTGACGACGTTACAGACCATTCTACATTG
ATTCACGAGTATTATTCCATTGCTACTGATAATCCAATTCACTTCACTGT
TGACACACAAATGAAAAACGGTAGAATGGCTATGAAAGCTTACGTCAGTT
CGACAATGGGGGTACCTGGAGGAACAACTGGTCTCATTTTCACTCCTATT
CCACATCAAATCAAATACGAAAAAGCTGAAGCTGTCGCAGTGGAGACCTT
CTCAAGAAATAAGGGTGGATCAAAGAGCCCAGCTGTTCTACAGAACGGTG
TGCACCACGTATCACGATCAACAGATGTTTTGGTTGACCGTCTAAAAGAA
ACTTTACAATACGTGAAAGAAGTCGTGAATGGTGATAGAGTAGGGGATAA
CGAGATCGGACGAAAATTGATGTCAATCGTTGGTTCCGTTCCACAAATGG
AAGCGTCGCAAGTCGAACAAATGATGAATAATAATATGCAGGATCTGCTG
ATGGTATTATACTTGTCCAGTCTAACGAAATCCCAACTTTCCGTTGGTAA
CAAACTCAATAGCATCATGTAAATGGCGTCGCAAAATACATGTGTGAAAC
AGGTTCTCATTCACCCAACTGCTTTATTCACGATAATCGATAGTTATGAA
AGGAGAAACGAAGATGCAAAAAGAGTAATTGGAACCCTCCTTGGTAGAGT
CGAAAAAAATGGAGTTGTTGAAGTTACAAACTGCTTCACAGTCCCTCACG
TAGAAACACAAGATGAGGTTGCACTCGATAAAGAGTATGCCATATCAATG
CTGGATTTACACAAACAAGCATCAAGGACTGAAGATATTGTCGGATGGTT
TGCTACAAGTGACGACGTTACAGACCATTCTACATTGATTCACGAGTATT
ATTCCATTGCTACTGATAATCCAATTCACTTCACTGTTGACACACAAATG
AAAAACGGTAGAATGGCTATGAAAGCTTACGTCAGTTCGACAATGGGGGT
ACCTGGAGGAACAACTGGTCTCATTTTCACTCCTATTCCACATCAAATCA
AATACGAAAAAGCTGAAGCTGTCGCAGTGGAGACCTTCTCAAGAAATAAG
GGTGGATCAAAGAGCCCAGCTGTTCTACAGAACGGTGTGCACCACGTATC
ACGATCAACAGATGTTTTGGTTGACCGTCTAAAAGAAACTTTACAATACG
TGAAAGAAGTCGTGAATGGTGATAGAGTAGGGGATAACGAGATCGGACGA
AAATTGATGTCAATCGTTGGTTCCGTTCCACAAATGGAAGCGTCGCAAGT
CGAACAAATGATGAATAATAATATGCAGGATCTGCTGATGGTATTATACT
TGTCCAGTCTAACGAAATCCCAACTTTCCGTTGGTAACAAACTCAATAGC
ATCATGTAAATGGCGTCGCAAAATACATGTGTGAAACAGGTTCTCATTCA
CCCAACTGCTTTATTCACGATAATCGATAGTTATGAAAGGAGAAACGAAG
ATGCAAAAAGAGTAATTGGAACCCTCCTTGGTAGAGTCGAAAAAAATGGA
GTTGTTGAAGTTACAAACTGCTTCACAGTCCCTCACGTAGAAACACAAGA
TGAGGTTGCACTCGATAAAGAGTATGCCATATCAATGCTGGATTTACACA
AACAAGCATCAAGGACTGAAGATATTGTCGGATGGTTTGCTACAAGTGAC
GACGTTACAGACCATTCTACATTGATTCACGAGTATTATTCCATTGCTAC
TGATAATCCAATTCACTTCACTGTTGACACACAAATGAAAAACGGTAGAA
TGGCTATGAAAGCTTACGTCAGTTCGACAATGGGGGTACCTGGAGGAACA
ACTGGTCTCATTTTCACTCCTATTCCACATCAAATCAAATACGAAAAAGC
TGAAGCTGTCGCAGTGGAGACCTTCTCAAGAAATAAGGGTGGATCAAAGA
GCCCAGCTGTTCTACAGAACGGTGTGCACCACGTATCACGATCAACAGAT
GTTTTGGTTGACCGTCTAAAAGAAACTTTACAATACGTGAAAGAAGTCGT
GAATGGTGATAGAGTAGGGGATAACGAGATCGGACGAAAATTGATGTCAA
TCGTTGGTTCCGTTCCACAAATGGAAGCGTCGCAAGTCGAACAAATGATG
AATAATAATATGCAGGATCTGCTGATGGTATTATACTTGTCCAGTCTAAC
GAAATCCCAACTTTCCGTTGGTAACAAACTCAATAGCATCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029276XLOC_029276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045799-exon-scaffold_101-1491911889:20486..20776TCONS_00045799-exon-scaffold_101-1491911889:20486..20776Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:20486..20776TCONS_00045799-exon-scaffold_101-1510915933:20486..20776Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:20486..20776TCONS_00045799-exon-scaffold_101-1575043694:20486..20776Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:29091..29170TCONS_00045799-exon-scaffold_101-1491911889:29091..29170Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:29091..29170TCONS_00045799-exon-scaffold_101-1510915933:29091..29170Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:29091..29170TCONS_00045799-exon-scaffold_101-1575043694:29091..29170Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:29340..29477TCONS_00045799-exon-scaffold_101-1491911889:29340..29477Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:29340..29477TCONS_00045799-exon-scaffold_101-1510915933:29340..29477Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:29340..29477TCONS_00045799-exon-scaffold_101-1575043694:29340..29477Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:30579..30670TCONS_00045799-exon-scaffold_101-1491911889:30579..30670Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:30579..30670TCONS_00045799-exon-scaffold_101-1510915933:30579..30670Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:30579..30670TCONS_00045799-exon-scaffold_101-1575043694:30579..30670Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:31245..31320TCONS_00045799-exon-scaffold_101-1491911889:31245..31320Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:31245..31320TCONS_00045799-exon-scaffold_101-1510915933:31245..31320Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:31245..31320TCONS_00045799-exon-scaffold_101-1575043694:31245..31320Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:31499..31559TCONS_00045799-exon-scaffold_101-1491911889:31499..31559Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:31499..31559TCONS_00045799-exon-scaffold_101-1510915933:31499..31559Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:31499..31559TCONS_00045799-exon-scaffold_101-1575043694:31499..31559Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:31715..31828TCONS_00045799-exon-scaffold_101-1491911889:31715..31828Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:31715..31828TCONS_00045799-exon-scaffold_101-1510915933:31715..31828Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:31715..31828TCONS_00045799-exon-scaffold_101-1575043694:31715..31828Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1491911889:32252..32414TCONS_00045799-exon-scaffold_101-1491911889:32252..32414Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1510915933:32252..32414TCONS_00045799-exon-scaffold_101-1510915933:32252..32414Clytia hemisphaericaexon
TCONS_00045799-exon-scaffold_101-1575043694:32252..32414TCONS_00045799-exon-scaffold_101-1575043694:32252..32414Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045799-proteinTCONS_00045799-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:20486..32414 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
243.546	216.335	151.708	139.792	185.795	152.54	280.804	299.335	324.78	329.378	310.115	299.073	330.976	346.944	360.493	376.27	362.685	370.961	197.318	198.645	370.724	360.2	247.399	248.552	275.426	310.976	270.758	277.816	196.692	189.995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR024969Rpn11/EIF3F_C
IPR027531eIF3f
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
Blast
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BLAST of TCONS_00045799 vs. Swiss-Prot (Human)
Match: EIF3F (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.515e-81
Identity = 130/266 (48.87%), Postives = 182/266 (68.42%), Query Frame = 1 
Query:  121 KQVLIHPTALFTIIDSYERRNEDAKRVIGTLLGRVEKNGVVEVTNCFTVPHVETQDEVALDKEYAISMLDLHKQASRTEDIVGWFATSDDVTDHSTLIHEYYSIATDNPIHFTVDTQMKNGRMAMKAYVSSTMGVPGGTTGLIFTPIPHQIKYEKAEAVAVETFSRNKGGSKSPAVLQNGVHHVSRSTDVLVDRLKETLQYVKEVVNGDRVGDNEIGRKLMSIVGSVPQMEASQVEQXXXXXXQDLLMVLYLSSLTKSQLSVGNKL 918
            + V +HP  L +I+DSYERRNE A RVIGTLLG V+K+ V EVTNCF+VPH E++DEVA+D E+A +M +LHK+ S  E I+GW+AT  D+T+HS LIHEYYS    NPIH TVDT ++NGRM++KAYVS+ MGVPG T G++FTP+  +  Y   E + V+   +          L + +  V  ++  + D L   LQY ++V++G    DN +GR LMS+V  VP++     E M+N+N+ DLLMV YL++LT+SQ+++  KL
Sbjct:   90 RVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSV-EVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 354
The following BLAST results are available for this feature:
BLAST of TCONS_00045799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3F3.515e-8148.87Eukaryotic translation initiation factor 3 subunit... [more]
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