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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045784 ID=TCONS_00045784|Name=TCONS_00045784|organism=Clytia hemisphaerica|type=transcript|length=1405bp
CAATTAAATGACAAATTTCGTTTTCTTTATCAAATAttattaaaagagaa
aaaactttTCTGGTCTTGGACACTTCATTACATCGATGTCCAAATAATCC
AAACGAGAATGATTAAAATCTCTTTCACCATTTGACCAGCTTCCAAGAAA
CATCTCTTCACTCGGCTGGTATTTATTCGTATCGTACGGTATCGTATTAA
AGGAGAAATGATCAATTGTCCATCTTTCTATTTATTCGGATTCTTATTTA
TGTTCCTCGTTGCTTTCAGCCTCCTTGATTCAAATCTCCTCTCATCTCCG
CTACCATTCGCTCTTTAAATATCAAGGAATACGAAAAAACTCCTTTTCGT
GTAACGGCCGatcattgaaaatctttttccaaaACTGATATAGAAGAACG
GTGTAATAGTGTTATCGCATCCCATTTtgcaaagaaaagaagaattgtaT
TGTTTGGATGATAACCAGACATGGGTAAACAGAAagtagaaaaacaaaac
atttgatTGAATCTCGATCATCAATTCAATCATCTTCATCAGCCTCATCT
CCAAGCATATCTTCTCTCGGTTCCAGTCCCTCTCCGTACTGTATCGCGTT
ATCGatataaatcaataaatcattCAGCGATTCTTCTTCATTAATGTTCA
AAGGTAAAAAATTGACTAGCGCGTAATCGTCAATCACACCTGCTATAGCC
TCGTTCAGTTTCTTAAATTTTACCGGTAGCGATTGGTTCAAATCGTTAAC
AATTTCAGGTGCGTTAGGACACAGATAGCGTTCAAGATTATCCGCACTTT
CTTTACTTAACAAATCCATTTTCGATAACACGTTAATGAATGGGACCTCT
AACTGGACCATGGCACTAAGCGCCGACATGGCGCCGGAGAAGAATTTAGC
AGCATCGATAAGAAACTGAGCATCCATAAGAAAAACACCGCAAATAGAAA
AATCCCAACTTTGTAAAGTATGTACGAGCTCTTTCATAACCGGAATGTGA
GTATACAACTCTATTTGACCTGgacaatcaaaaataaaataatcatcTTC
ACCCTCTCCTAATTcttgtttcaaccaatcaaaattctgTTGTAAATATT
CCATACAGAATACCAACCCACCGTTCGGACCAAGTCTTAAATCCTCTGCT
TCCATGACGTCGTCAACGGCCACTAATTCTCGAATATCGATTGAGACCGG
GTAGGAAAAATGTTCGGCTGCCGGATCTAAGTTCACTATGGTAACAGTCC
TTTTAATGTTCTCACAATGTTCATGCATGTATTTGCAATAAGTGCTTTTG
CCGGAACCTGCCGGACCCATGATGATTTGACAATAACGCATTTTgtcctt
tgttttttattgttttgtttttttattttggatttttcatATTCTTGTTG
CTGAA Run BLAST on NCBI protein sequence of TCONS_00045784-protein >TCONS_00045784-protein ID=TCONS_00045784-protein|Name=TCONS_00045784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MRYCQIIMGPAGSGKSTYCKYMHEHCENIKRTVTIVNLDPAAEHFSYPVS
IDIRELVAVDDVMEAEDLRLGPNGGLVFCMEYLQQNFDWLKQELGEGEDD
YFIFDCPGQIELYTHIPVMKELVHTLQSWDFSICGVFLMDAQFLIDAAKF
FSGAMSALSAMVQLEVPFINVLSKMDLLSKESADNLERYLCPNAPEIVND
LNQSLPVKFKKLNEAIAGVIDDYALVNFLPLNINEEESLNDLLIYIDNAI
QYGEGLEPREDMLGDEADEDD Run BLAST on NCBI transcript from alignment at scaffold_100:510824..512228 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045784 ID=TCONS_00045784|Name=TCONS_00045784|organism=Clytia hemisphaerica|type=transcript|length=1405bp|location=Sequence derived from alignment at scaffold_100:510824..512228 (Clytia hemisphaerica)
TTCAGCAACAAGAATatgaaaaatccaaaataaaaaaacaaaacaataaa
aaacaaaggacAAAATGCGTTATTGTCAAATCATCATGGGTCCGGCAGGT
TCCGGCAAAAGCACTTATTGCAAATACATGCATGAACATTGTGAGAACAT
TAAAAGGACTGTTACCATAGTGAACTTAGATCCGGCAGCCGAACATTTTT
CCTACCCGGTCTCAATCGATATTCGAGAATTAGTGGCCGTTGACGACGTC
ATGGAAGCAGAGGATTTAAGACTTGGTCCGAACGGTGGGTTGGTATTCTG
TATGGAATATTTACAAcagaattttgattggttgaaacaagAATTAGGAG
AGGGTGAAgatgattattttatttttgattgtcCAGGTCAAATAGAGTTG
TATACTCACATTCCGGTTATGAAAGAGCTCGTACATACTTTACAAAGTTG
GGATTTTTCTATTTGCGGTGTTTTTCTTATGGATGCTCAGTTTCTTATCG
ATGCTGCTAAATTCTTCTCCGGCGCCATGTCGGCGCTTAGTGCCATGGTC
CAGTTAGAGGTCCCATTCATTAACGTGTTATCGAAAATGGATTTGTTAAG
TAAAGAAAGTGCGGATAATCTTGAACGCTATCTGTGTCCTAACGCACCTG
AAATTGTTAACGATTTGAACCAATCGCTACCGGTAAAATTTAAGAAACTG
AACGAGGCTATAGCAGGTGTGATTGACGATTACGCGCTAGTCAATTTTTT
ACCTTTGAACATTAATGAAGAAGAATCGCTGaatgatttattgatttata
tCGATAACGCGATACAGTACGGAGAGGGACTGGAACCGAGAGAAGATATG
CTTGGAGATGAGGCTGATGAAGATGATTGAATTGATGATCGAGATTCAat
caaatgttttgtttttctactTTCTGTTTACCCATGTCTGGTTATCATCC
AAACAAtacaattcttcttttctttgcaAAATGGGATGCGATAACACTAT
TACACCGTTCTTCTATATCAGTtttggaaaaagattttcaatgatCGGCC
GTTACACGAAAAGGAGTTTTTTCGTATTCCTTGATATTTAAAGAGCGAAT
GGTAGCGGAGATGAGAGGAGATTTGAATCAAGGAGGCTGAAAGCAACGAG
GAACATAAATAAGAATCCGAATAAATAGAAAGATGGACAATTGATCATTT
CTCCTTTAATACGATACCGTACGATACGAATAAATACCAGCCGAGTGAAG
AGATGTTTCTTGGAAGCTGGTCAAATGGTGAAAGAGATTTTAATCATTCT
CGTTTGGATTATTTGGACATCGATGTAATGAAGTGTCCAAGACCAGAaaa
gttttttctcttttaataaTATTTGATAAAGAAAACGAAATTTGTCATTT
AATTG Coding sequence (CDS) from alignment at scaffold_100:510824..512228 >TCONS_00045784 ID=TCONS_00045784|Name=TCONS_00045784|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_100:510824..512228 (Clytia hemisphaerica)
ATGCGTTATTGTCAAATCATCATGGGTCCGGCAGGTTCCGGCAAAAGCAC
TTATTGCAAATACATGCATGAACATTGTGAGAACATTAAAAGGACTGTTA
CCATAGTGAACTTAGATCCGGCAGCCGAACATTTTTCCTACCCGGTCTCA
ATCGATATTCGAGAATTAGTGGCCGTTGACGACGTCATGGAAGCAGAGGA
TTTAAGACTTGGTCCGAACGGTGGGTTGGTATTCTGTATGGAATATTTAC
AAcagaattttgattggttgaaacaagAATTAGGAGAGGGTGAAgatgat
tattttatttttgattgtcCAGGTCAAATAGAGTTGTATACTCACATTCC
GGTTATGAAAGAGCTCGTACATACTTTACAAAGTTGGGATTTTTCTATTT
GCGGTGTTTTTCTTATGGATGCTCAGTTTCTTATCGATGCTGCTAAATTC
TTCTCCGGCGCCATGTCGGCGCTTAGTGCCATGGTCCAGTTAGAGGTCCC
ATTCATTAACGTGTTATCGAAAATGGATTTGTTAAGTAAAGAAAGTGCGG
ATAATCTTGAACGCTATCTGTGTCCTAACGCACCTGAAATTGTTAACGAT
TTGAACCAATCGCTACCGGTAAAATTTAAGAAACTGAACGAGGCTATAGC
AGGTGTGATTGACGATTACGCGCTAGTCAATTTTTTACCTTTGAACATTA
ATGAAGAAGAATCGCTGaatgatttattgatttatatCGATAACGCGATA
CAGTACGGAGAGGGACTGGAACCGAGAGAAGATATGCTTGGAGATGAGGC
TGATGAAGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045784-exon-scaffold_100-1491911889:510824..512228 | TCONS_00045784-exon-scaffold_100-1491911889:510824..512228 | Clytia hemisphaerica | exon |
| TCONS_00045784-exon-scaffold_100-1510915933:510824..512228 | TCONS_00045784-exon-scaffold_100-1510915933:510824..512228 | Clytia hemisphaerica | exon |
| TCONS_00045784-exon-scaffold_100-1575043694:510824..512228 | TCONS_00045784-exon-scaffold_100-1575043694:510824..512228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:510824..512228 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045784 vs. Swiss-Prot (Human)
Match: GPN3 (GPN-loop GTPase 3 OS=Homo sapiens GN=GPN3 PE=1 SV=2) HSP 1 Score: 337.421 bits (864), Expect = 1.399e-112 Identity = 155/260 (59.62%), Postives = 204/260 (78.46%), Query Frame = -2
Query: 562 RYCQIIMGPAGSGKSTYCKYMHEHCENIKRTVTIVNLDPAAEHFSYPVSIDIRELVAVDDVMEAEDLRLGPNGGLVFCMEYLQQNFDWLKQELGEGEDDYFIFDCPGQIELYTHIPVMKELVHTLQSWDFSICGVFLMDAQFLIDAAKFFSGAMSALSAMVQLEVPFINVLSKMDLLSKESADNLERYLCPNAPEIVNDLNQSL-PVKFKKLNEAIAGVIDDYALVNFLPLNINEEESLNDLLIYIDNAIQYGEGLEPRE 1338
RY Q++MGPAGSGKSTYC M +HCE + R+V +VNLDPAAEHF+Y V DIREL+ VDDVME + LR GPNGGLVFCMEY NFDWL+ LG EDDY +FDCPGQIELYTH+PVMK+LV L+ W+F +CGVFL+D+QF++++ KF SG ++ALSAM+ LE+P +N+++KMDLLSK++ +E++L P+ ++ D L KFKKL +AI G+IDDY++V FLP + ++EES+N +L +ID AIQYGE LE +E
Sbjct: 3 RYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKE 262
The following BLAST results are available for this feature:
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