|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045748 ID=TCONS_00045748|Name=TCONS_00045748|organism=Clytia hemisphaerica|type=transcript|length=4106bpRun BLAST on NCBI protein sequence of TCONS_00045748-protein >TCONS_00045748-protein ID=TCONS_00045748-protein|Name=TCONS_00045748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp MDDDRGRPPQQNGIDTIEMGLFADTSEYFDHNSNEPAPEDDLGLSNLFADRun BLAST on NCBI transcript from alignment at scaffold_100:706912..772223- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045748 ID=TCONS_00045748|Name=TCONS_00045748|organism=Clytia hemisphaerica|type=transcript|length=65312bp|location=Sequence derived from alignment at scaffold_100:706912..772223- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:706912..772223- >TCONS_00045748 ID=TCONS_00045748|Name=TCONS_00045748|organism=Clytia hemisphaerica|type=CDS|length=40554bp|location=Sequence derived from alignment at scaffold_100:706912..772223- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045748 vs. Swiss-Prot (Human)
Match: TMC7 (Transmembrane channel-like protein 7 OS=Homo sapiens GN=TMC7 PE=1 SV=1) HSP 1 Score: 320.087 bits (819), Expect = 1.394e-93 Identity = 229/685 (33.43%), Postives = 380/685 (55.47%), Query Frame = 1
Query: 352 TPNVDDGRSKSLVRSDVAGIIDMEDGLHED----ELRSIPAPMAQRKSVRRMNQTLKQSEKERQKSLSCWKFFKLRVAMGWYRFKSNLKEFLKVLELWRSPLKEVEGHFGNGVLSYFIFLKSXXXXXXXXXXXXXXXXXXPQVVINYGELVQNITQNYIVTVDSTTANFTCPNEDKDFYKNRTLSNNILDFFTGEGYINTTLMFYSNYQGDIYTSVSNNDITYNMELAYICVGGAYLIISLIMMVKNLAQGFTESIVETGGFFYSYCNKVFAGWDYCITDSKAAFLKCKSIAKDFKAELSEEKRLERIKGRTQFDKLKIYSFRMLVTIIVLGLLAVSIFAIIKAVEVSSNPELSRETNSVLV---ILKRWASSLTISALNVCLPFIFEILTSLEDWSPRVEVALTLWRXXXXXXXXXXXXXITL---FTSYSEHDCHI---------CWENQVGSQMFNLILIDFFVSVGITIFGETGRKYIYRYLGCGCNLGEKIGMQEFQIPKNVLELVYGQSLIWIGTFFAPLIPVVGIIKLFILFYVKKISLMLNCKPSSQPYQGARSNYXXXXXXXXXXXXCSFAVGWGLTRIKTS-CCGPFKNVGCVADYEMMDVVGRTIDSWPSWIGGIIDFIKTTAXXXXXXXXXXXXXXXXXAMTKAHEKMIHMLKDQLIMEGRDKRFLMDRLIRA 2346
T + D +S +L++ + +ED + E+ LR+ +++++ +R + +T + K LS W +K + W RF +E LELWR ++ +EG FG G+ SYF FL+ L+LLNLVIF ++F +++P ++ Y IT + V + + C + I+D +G G++ T +FY +Y D V + TY++ LAY+ A L +SL+ +VK +GF +++ + F SYCNK+FAGWD+CIT+ A LK S+ + +A+L EE+ ++I RT + ++IYS R+ + IVL +L +AI A V S + +E + ++ + + S+ I+ N P IF + ED+SP E+ LT+ R V ++LA++ VLV TL TS + C + CWE QVG +M+ L++ DF + + +T+F + RK + Y C L + G QEF IP NVL +VYGQ++ WIG FF+PL+P + +K I+FYVK+ SL+ C+PS +P++ + SN+FF L+LL+ L + ++RI +S CGPF N +V+ +T+ ++PS + I + + AF P F+II L+++Y+ A+ AH++++ L++QL +E RDK +L+ +L A
Sbjct: 55 TVHSRDKQSGTLLKPTDSYSSQLEDRIAENLSSHSLRNYALNISEKRRLRDIQET-------QMKYLSEWDQWKRYSSKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFMLVLLPVLLTKY-----KITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTID---GVKFQNFTYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNRSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYAIYVAT-VFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCS-SCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTT-----WEVIPKTVSTFPSSLQSFIHGVTSEAFAVPFFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEA 717 The following BLAST results are available for this feature:
BLAST of TCONS_00045748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.