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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045715 ID=TCONS_00045715|Name=TCONS_00045715|organism=Clytia hemisphaerica|type=transcript|length=4354bpRun BLAST on NCBI protein sequence of TCONS_00045715-protein >TCONS_00045715-protein ID=TCONS_00045715-protein|Name=TCONS_00045715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp MAASRDHDNNNMNGYSSSSSEEDDNIGYHFELVENDFQCIICHYVIRGFTRun BLAST on NCBI transcript from alignment at scaffold_100:31396..60875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045715 ID=TCONS_00045715|Name=TCONS_00045715|organism=Clytia hemisphaerica|type=transcript|length=29480bp|location=Sequence derived from alignment at scaffold_100:31396..60875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:31396..60875- >TCONS_00045715 ID=TCONS_00045715|Name=TCONS_00045715|organism=Clytia hemisphaerica|type=CDS|length=14310bp|location=Sequence derived from alignment at scaffold_100:31396..60875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045715 vs. Swiss-Prot (Human)
Match: ECSIT (Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial OS=Homo sapiens GN=ECSIT PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.410e-36 Identity = 92/343 (26.82%), Postives = 161/343 (46.94%), Query Frame = 2
Query: 362 LLRQCLSEQPDREGFFKAVDIYVDRNKRRHGHMEFIVTAMKFIEPYGLGKDLEIYNKLLDVFPRDKFVNRTLFDAIWPKQHPQMNLALDILTKMEWQGIMPSEETHDLLYSIFGRASFPLKKVYRMWFWFETLKDINPYYLPDEVYKDRLNIVRAGIDRILGNNDGTKXXXXXXXXXXXXXXXXMVDYKHFIISSQSEYQKQCISMLNTDKTVFVEGPINIWLGKKREEYFILKTGRQDLMTC-----------------------------DELTVQPDEEREGVVLAVCFATRPYRENISKWLTYLQEENKQLKEMNIVYNISD-------GEVGYERPTL 1282
L Q + D+ F + V + + + R+ GH++FI A++ + YG+ +DL +YN+LL++FP++ F R + I+ Q + +L +ME G+MP++ET LL IFGR S+P+ K+ R+ WF ++NP+ +P ++ +D + + G+ + D + + I ++ + + I+ QS Q+ ++ N + VFVEGP ++WL K Y IL R DL+ D +E EG V A+C A + ++KW+ LQE N L ++ +V+ ++ G E P L
Sbjct: 75 LFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREYGVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETEFLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHM--EPDLSARVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCVYYHIL---RADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPL 412 The following BLAST results are available for this feature:
BLAST of TCONS_00045715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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