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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045709 ID=TCONS_00045709|Name=TCONS_00045709|organism=Clytia hemisphaerica|type=transcript|length=2553bpRun BLAST on NCBI protein sequence of TCONS_00045709-protein >TCONS_00045709-protein ID=TCONS_00045709-protein|Name=TCONS_00045709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp GCPVTIKLSKRKEHEMNCKYAPVVCPNSSLCPMLIKMELDSHLSHCKHARRun BLAST on NCBI transcript from alignment at scaffold_100:829220..847138+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045709 ID=TCONS_00045709|Name=TCONS_00045709|organism=Clytia hemisphaerica|type=transcript|length=17919bp|location=Sequence derived from alignment at scaffold_100:829220..847138+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:829220..847138+ >TCONS_00045709 ID=TCONS_00045709|Name=TCONS_00045709|organism=Clytia hemisphaerica|type=CDS|length=23256bp|location=Sequence derived from alignment at scaffold_100:829220..847138+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045709 vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1) HSP 1 Score: 436.032 bits (1120), Expect = 1.190e-140 Identity = 224/461 (48.59%), Postives = 308/461 (66.81%), Query Frame = 1
Query: 1 GCPVTIKLSKRKEHEMNCKYAPVVCPNSSLCPMLIKMELDSHLSHCKHARCPHSRFSCPFEGTSDELVGHLESCRFEGMKEFLVHSEKQMNELKDIIKMKQKESDYLKGTISDLKGKLQNTELTFARRIDQLEERLAKVSTVASQNSGVLVDVEKQLASMDSRAFN---LGAFDVQSVLKCKGTFVGHQGPV--CTXXXXXXXXXXXXXXXXIKVWDTRSNYTCIATFTEHTGMVLALNAYRGRLYSGSADCTISVFDIDNLKLIENFRADDNAICTLAVANGMLFSGSLKSIKVWSL--DSLKNITVLSPMNHWVRALATSENKLYCGAYKTIKVYDMKNFEPLHVIDSQGGHVYSLVVSSDYIIAGTYENCILVWNKNSYNKIAKLTGHAGIVYSLVLMTIVDSNRVISASYDGSLRVWSLDNMQCVQTLFRHQGSVTTLAVSRGRIFSGSVDRTVKVW 1362
GCP TIKLS RK+HE +C Y PV CPN+ CP L++M L++HL C+H +CPHS++ C F G D HLE+CRFEG+KEFL ++ + +E+ + K +E +L+ + L K+ E + + D L+E +K+S + + +L+ +++R N LG++D Q + KCKGTFVGHQGPV + LLFSGSSD +IKVWDT + Y C T H G+VLAL +LYSGSADCTI V+DI NL+ + RA DN +CTL ++ +LFSGSLK+IKVW + LK L+ +NHWVRAL +++ LY G+Y+TIK++D++ + +HV+ + GG VYS+ V++ +I+ GTYEN I VW+ S ++ LTGH G VY+L +++ D +V SASYD SLRVWS+DNM C QTL RHQGSVT LAVSRGR+FSG+VD TVKVW
Sbjct: 209 GCPFTIKLSARKDHEGSCDYRPVRCPNNPSCPPLLRMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINAR-LNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNVLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW 668 The following BLAST results are available for this feature:
BLAST of TCONS_00045709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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