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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045704 ID=TCONS_00045704|Name=TCONS_00045704|organism=Clytia hemisphaerica|type=transcript|length=1686bpRun BLAST on NCBI protein sequence of TCONS_00045704-protein >TCONS_00045704-protein ID=TCONS_00045704-protein|Name=TCONS_00045704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp MSVYATKGVRILLVGDDGVGKTSLILSLVTEEFPDEVPSRAEEITIPADVRun BLAST on NCBI transcript from alignment at scaffold_100:789326..815031+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045704 ID=TCONS_00045704|Name=TCONS_00045704|organism=Clytia hemisphaerica|type=transcript|length=25706bp|location=Sequence derived from alignment at scaffold_100:789326..815031+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:789326..815031+ >TCONS_00045704 ID=TCONS_00045704|Name=TCONS_00045704|organism=Clytia hemisphaerica|type=CDS|length=21825bp|location=Sequence derived from alignment at scaffold_100:789326..815031+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045704 vs. Swiss-Prot (Human)
Match: MIRO1 (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2) HSP 1 Score: 463.381 bits (1191), Expect = 1.274e-155 Identity = 246/475 (51.79%), Postives = 330/475 (69.47%), Query Frame = 3
Query: 180 KGVRILLVGDDGVGKTSLILSLVTEEFPDEVPSRAEEITIPADVTPEKVPTHIVDFSSAEQTEDELRFELEQADVVCVVYACDNDESISRITSYWLPIVFDVC-GEPRKPIVLVGNKSDCMEAEGDRMNELLSIMDQYPEVETCIECSAYDLKNISELFYYAQKAVLHPTAPLYSHDEQMLTEKCQEGLERIFRICDLDNDGVLNDTELNEFQKRCFRNSLPPHGLQEVKNTVQKHMKXXXXXXXXXXXXFLYLHTLFIQKGRQETTWTALNRFGYGSDLELRQDYLEPNFVIPSNCTTELSSAGLDFVMELFYKYDRDEDDALSSDELKDMLWLCP----DEAVNDFTSTYTNDEGWCTAEGFVAYWILQTYLDYKWACRMLANFGF-IHGDLDNQLTGLRVTRAKDIDMQKRKTTRSVFLVYVVGKRNCGKTAFLQSFVDRYVGSYQK--DQPLSKHVINAVQLRKQEVYLIV 1580
K VRILLVG+ VGKTSLI+SLV+EEFP+EVP RAEEITIPADVTPE+VPTHIVD+S AEQ++++L E+ QA+V+C+VYA +N SI ++TS W+P++ + + R P++LVGNKSD +E M +L IM+QY E+ETC+ECSA +LKNISELFYYAQKAVLHPT PLY +E+ + C + L RIF+I D DNDG LND ELN FQ+ CF L P L++VKN V+KH+ +GV + G+T++GFL+LHTLFIQ+GR ETTWT L RFGY DL+L +YL P IP +CTTEL+ F+ F K+D D D ALS DELKD+ + P VN+ + TN+ GW T +GF++ W L TYLD + L G+ I + ++Q + + VTR K ID+QK++T R+VF V+G +NCGK+ LQ+ + R + +K + S + IN V + QE YL++
Sbjct: 3 KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSS--METILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNN--TVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLL 473 The following BLAST results are available for this feature:
BLAST of TCONS_00045704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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