TCONS_00045704-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045704-protein
Unique NameTCONS_00045704-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045704-protein ID=TCONS_00045704-protein|Name=TCONS_00045704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MSVYATKGVRILLVGDDGVGKTSLILSLVTEEFPDEVPSRAEEITIPADV
TPEKVPTHIVDFSSAEQTEDELRFELEQADVVCVVYACDNDESISRITSY
WLPIVFDVCGEPRKPIVLVGNKSDCMEAEGDRMNELLSIMDQYPEVETCI
ECSAYDLKNISELFYYAQKAVLHPTAPLYSHDEQMLTEKCQEGLERIFRI
CDLDNDGVLNDTELNEFQKRCFRNSLPPHGLQEVKNTVQKHMKEGVTEEG
VTIEGFLYLHTLFIQKGRQETTWTALNRFGYGSDLELRQDYLEPNFVIPS
NCTTELSSAGLDFVMELFYKYDRDEDDALSSDELKDMLWLCPDEAVNDFT
STYTNDEGWCTAEGFVAYWILQTYLDYKWACRMLANFGFIHGDLDNQLTG
LRVTRAKDIDMQKRKTTRSVFLVYVVGKRNCGKTAFLQSFVDRYVGSYQK
DQPLSKHVINAVQLRKQEVYLIVSGPVFLFYDLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029210XLOC_029210Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045704TCONS_00045704Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013567EF_hand_assoc_2
IPR001806Small_GTPase
IPR013566EF_hand_assoc_1
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR020860MIRO_dom
IPR027417P-loop_NTPase
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 149..171
score: 27.68
coord: 9..30
score: 38.87
coord: 112..125
score: 49.31
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..174
e-value: 2.9E-6
score: -31.5
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..174
e-value: 1.7E-7
score: -22.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..174
e-value: 6.8E-4
score: -50.2
NoneNo IPR availableGENE3D1.10.238.10coord: 180..285
e-value: 3.8E-15
score: 55.2
NoneNo IPR availableGENE3D3.40.50.300coord: 2..178
e-value: 1.8E-29
score: 101.8
NoneNo IPR availableGENE3D1.10.238.10coord: 303..399
e-value: 0.0047
score: 16.1
NoneNo IPR availableGENE3D3.40.50.300coord: 402..474
e-value: 0.0052
score: 15.5
NoneNo IPR availableCDDcd01893Miro1coord: 7..174
e-value: 1.36458E-83
score: 256.88
IPR013567EF hand associated, type-2PFAMPF08356EF_assoc_2coord: 226..310
e-value: 1.2E-31
score: 108.4
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..171
e-value: 8.3E-17
score: 61.2
IPR013566EF hand associated, type-1PFAMPF08355EF_assoc_1coord: 350..414
e-value: 5.8E-13
score: 48.2
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 322..334
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 202..214
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 309..344
score: 8.042
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 189..224
score: 8.879
IPR020860MIRO domainPROSITEPS51423MIROcoord: 2..182
score: 14.198
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..181
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 175..260
coord: 309..375

Blast
[Close]
BLAST of TCONS_00045704-protein vs. Swiss-Prot (Human)
Match: MIRO1 (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 481.871 bits (1239), Expect = 7.705e-166
Identity = 246/475 (51.79%), Postives = 330/475 (69.47%), Query Frame = 0 
Query:    7 KGVRILLVGDDGVGKTSLILSLVTEEFPDEVPSRAEEITIPADVTPEKVPTHIVDFSSAEQTEDELRFELEQADVVCVVYACDNDESISRITSYWLPIVFDVC-GEPRKPIVLVGNKSDCMEAEGDRMNELLSIMDQYPEVETCIECSAYDLKNISELFYYAQKAVLHPTAPLYSHDEQMLTEKCQEGLERIFRICDLDNDGVLNDTELNEFQKRCFRNSLPPHGLQEVKNTVQKHMKEGVTEEGVTIEGFLYLHTLFIQKGRQETTWTALNRFGYGSDLELRQDYLEPNFVIPSNCTTELSSAGLDFVMELFYKYDRDEDDALSSDELKDMLWLCP----DEAVNDFTSTYTNDEGWCTAEGFVAYWILQTYLDYKWACRMLANFGF-IHGDLDNQLTGLRVTRAKDIDMQKRKTTRSVFLVYVVGKRNCGKTAFLQSFVDRYVGSYQK--DQPLSKHVINAVQLRKQEVYLIV 473
            K VRILLVG+  VGKTSLI+SLV+EEFP+EVP RAEEITIPADVTPE+VPTHIVD+S AEQ++++L  E+ QA+V+C+VYA +N  SI ++TS W+P++ +    + R P++LVGNKSD +E     M  +L IM+QY E+ETC+ECSA +LKNISELFYYAQKAVLHPT PLY  +E+ +   C + L RIF+I D DNDG LND ELN FQ+ CF   L P  L++VKN V+KH+ +GV + G+T++GFL+LHTLFIQ+GR ETTWT L RFGY  DL+L  +YL P   IP +CTTEL+     F+   F K+D D D ALS DELKD+  + P       VN+  +  TN+ GW T +GF++ W L TYLD +     L   G+ I  + ++Q + + VTR K ID+QK++T R+VF   V+G +NCGK+  LQ+ + R +   +K  +   S + IN V +  QE YL++
Sbjct:    3 KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSS--METILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNN--TVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLL 473
The following BLAST results are available for this feature:
BLAST of TCONS_00045704-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIRO17.705e-16651.79Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
back to top