TCONS_00045694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045694
Unique NameTCONS_00045694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045694 ID=TCONS_00045694|Name=TCONS_00045694|organism=Clytia hemisphaerica|type=transcript|length=1899bp
aagatttttatgaAGATTTAACAAGTATAAGCTGACAATTGGAAATTTGT
CATTGTATTACTCTCTGATAGTCATATTTGGGAAAACATTCATTAAAGAT
GTCTCGTTAGATTGAAACACAAAATGAAGCAACGCCGATCACTCAGCact
ttcttcaaagtttttgttttggtaATAACCGTCTTCGCCCTCCGTAAATC
ATGGATTGTGAACTCAGAGGATGGCTTAAAGACACTCAGAAGGCAAAGTC
GACATTTAATGACCAATGCTAATGACGATCGTTGTACACATTCGAAAGGA
GCCATTGAGGAATTTCCGAAAGATTTTTTAACTCAGGAACAAAGGGAGGA
GGGTGGTATCATAATCCATATCCTCATCACGTGTTATATGTTTGGACTTC
TGGCTGTTGTTTGCGACGATTATTTCGTGTTATCCTTATATCATATCTGC
TCACGTCTCAAAATGTCCAAAGACGTAGCCGGGGCAACATTTATGGCCAT
CGGCTCCTCAGCGCCGACCCTTTTTATCGCTGTTGTCTCAATCTTCTTCA
CAGAGAATGCAGGAGACGTTGGCCTCGGCACCGTAGTTGGATCTACTATT
TTTAACACGCTTTTTATCGTTGCTATATGTTCACTGGCTGCTTCGGCTCC
CGTAAGAGTTTCCACGTGGCCGCTGATTCGAGATGCGTTTGTTTACACGC
TTGGAACTTTTACACTCGTTTTCACTGTTCGTGACCGGCAAGTCTTCTGG
TGGGAAGCTCTCATCTTCGTATACATTTACATCTTGTATATCATAATCAT
GTATTTCAATAGACCACTATCCAGGCATTTTAACAGACTTTTAGACTCGA
TGTGTGGGCAATGCGAAACAATACAAGATGAGTTGGAAATGTCGTCTGCA
GATTTTCTAACATCCCCGAAACCTGAACCACGACAAAAAGCCAAAGAACA
AGAACAGAAAAAGTTGGATCGAGAAAGAGCTCAAGAAGACCTTTCCGTTG
ATGATTCTTATACAGCGGAATTAGAACAATTTGAGAATAAGCAGCAATCA
CCGTTACGTATTCCAGACGGATGTGCTAACAAGATAACCTGGATTCTCGG
CTTCCCTGTTATATTTCTCTTCTATTTCACCATTCCACCTTGCTGTAAAA
AGAAGTGGTCAGAGTGGTATCTAGTGACTTTCTCCATGTCTGTGTTATGG
ATGGGGCTACTATCATATATCTTAGTATGGATGGTTTGCGTTATcggttt
cactttcgatatccCTGATTGTATTATGGGTATGACTTTTCTGGCCGCTG
GGTCCAGTATTCCCGACGTTATGGCGTCAGTGATCGTGATACGACAAGGA
TCGGCTGATATGGCTCTATCTAATGCGATCGGGAGTAATGTCTTTGATAT
GTTATGTCTGGGTGTTCCTTGGTTTATGAAGTCCGCCTTTATGGAGCCAG
GGACGCCGGTCCAGATACAGAGCCAGTCGATTATGATTTCAGCCTTGCTT
TTGATTGGATCAATTGTGTTTACTGTGATTGCAATACATTTGAACGATTG
GAAATTAGACTTTAAATTGGGCATCATTTTCTTGTTGGTGTACATGGTTT
TCATTGCTCTGGCAACTTTGTTGGAGTTCCTTGCTTGCCCGTGTGTTTTG
GATGACTTTCTGCCAGCAACGTAAAGTATTAaacaagtttttgaaagacc
aaaatggactaaaatgcaactaaaaagtactttttaaaattaatttatat
ttcttttttcgaaATGGTAATCTTTATACATTTgtaatttacattttttg
tagaaaataatttacataagtgcttaaatctttaaattttatatttgtCT
TACAAAACCCTCTCAGTTTTCACATTACGTTTCCTTAGAATACTTTCGC
Run BLAST on NCBI

protein sequence of TCONS_00045694-protein

>TCONS_00045694-protein ID=TCONS_00045694-protein|Name=TCONS_00045694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MKQRRSLSTFFKVFVLVITVFALRKSWIVNSEDGLKTLRRQSRHLMTNAN
DDRCTHSKGAIEEFPKDFLTQEQREEGGIIIHILITCYMFGLLAVVCDDY
FVLSLYHICSRLKMSKDVAGATFMAIGSSAPTLFIAVVSIFFTENAGDVG
LGTVVGSTIFNTLFIVAICSLAASAPVRVSTWPLIRDAFVYTLGTFTLVF
TVRDRQVFWWEALIFVYIYILYIIIMYFNRPLSRHFNRLLDSMCGQCETI
QDELEMSSADFLTSPKPEPRQKAKEQEQKKLDRERAQEDLSVDDSYTAEL
EQFENKQQSPLRIPDGCANKITWILGFPVIFLFYFTIPPCCKKKWSEWYL
VTFSMSVLWMGLLSYILVWMVCVIGFTFDIPDCIMGMTFLAAGSSIPDVM
ASVIVIRQGSADMALSNAIGSNVFDMLCLGVPWFMKSAFMEPGTPVQIQS
QSIMISALLLIGSIVFTVIAIHLNDWKLDFKLGIIFLLVYMVFIALATLL
EFLACPCVLDDFLPAT
Run BLAST on NCBI

transcript from alignment at scaffold_100:620033..622011+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045694 ID=TCONS_00045694|Name=TCONS_00045694|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at scaffold_100:620033..622011+ (Clytia hemisphaerica)
aagatttttatgaAGATTTAACAAGTATAAGCTGACAATTGGAAATTTGT
CATTGTATTACTCTCTGATAGTCATATTTGGGAAAACATTCATTAAAGAT
GTCTCGTTAGATTGAAACACAAAATGAAGCAACGCCGATCACTCAGCact
ttcttcaaagtttttgttttggtaATAACCGTCTTCGCCCTCCGTAAATC
ATGGATTGTGAACTCAGAGGATGGCTTAAAGACACTCAGAAGGCAAAGTC
GACATTTAATGACCAATGCTAATGACGATCGTTGTACACATTCGAAAGGA
GCCATTGAGGAATTTCCGAAAGATTTTTTAACTCAGGAACAAAGGGAGGA
GGGTGGTATCATAATCCATATCCTCATCACGTGTTATATGTTTGGACTTC
TGGCTGTTGTTTGCGACGATTATTTCGTGTTATCCTTATATCATATCTGC
TCACGTCTCAAAATGTCCAAAGACGTAGCCGGGGCAACATTTATGGCCAT
CGGCTCCTCAGCGCCGACCCTTTTTATCGCTGTTGTCTCAATCTTCTTCA
CAGAGAATGCAGGAGACGTTGGCCTCGGCACCGTAGTTGGATCTACTATT
TTTAACACGCTTTTTATCGTTGCTATATGTTCACTGGCTGCTTCGGCTCC
CGTAAGAGTTTCCACGTGGCCGCTGATTCGAGATGCGTTTGTTTACACGC
TTGGAACTTTTACACTCGTTTTCACTGTTCGTGACCGGCAAGTCTTCTGG
TGGGAAGCTCTCATCTTCGTATACATTTACATCTTGTATATCATAATCAT
GTATTTCAATAGACCACTATCCAGGCATTTTAACAGACTTTTAGACTCGA
TGTGTGGGCAATGCGAAACAATACAAGATGAGTTGGAAATGTCGTCTGCA
GATTTTCTAACATCCCCGAAACCTGAACCACGACAAAAAGCCAAAGAACA
AGAACAGAAAAAGTTGGATCGAGAAAGAGCTCAAGAAGACCTTTCCGTTG
ATGATTCTTATACAGCGGAATTAGAACAATTTGAGAATAAGCAGCAATCA
CCGTTACGTATTCCAGACGGATGTGCTAACAAGATAACCTGGATTCTCGG
CTTCCCTGTTATATTTCTCTTCTATTTCACCATTCCACCTTGCTGTAAAA
AGAAGTGGTCAGAGTGGTATCTAGTGACTTTCTCCATGTCTGTGTTATGG
ATGGGGCTACTATCATATATCTTAGTATGGATGGTTTGCGTTATcggttt
cactttcgatatccCTGATTGTATTATGGGTATGACTTTTCTGGCCGCTG
GGTCCAGTATTCCCGACGTTATGGCGTCAGTGATCGTGATACGACAAGGA
TCGGCTGATATGGCTCTATCTAATGCGATCGGGAGTAATGTCTTTGATAT
GTTATGTCTGGGTGTTCCTTGGTTTATGAAGTCCGCCTTTATGGAGCCAG
GGACGCCGGTCCAGATACAGAGCCAGTCGATTATGATTTCAGCCTTGCTT
TTGATTGGATCAATTGTGTTTACTGTGATTGCAATACATTTAAACGATTG
GAAATTAGACTTTAAATTGGGcatcatttttcttttggtctacATGGTTT
TCATNTGATTGCAATACATTTGAACGATTGGAAATTAGACTTTAAATTGG
GCATCATTTTCTTGTTGGTGTACATGGTTTTCATTGCTCTGGCAACTTTG
TTGGAGTTCCTTGCTTGCCCGTGTGTTTTGGATGACTTTCTGCCAGCAAC
GTAAAGTATTAaacaagtttttgaaagaccaaaatggactaaaatgcaac
taaaaagtactttttaaaattaatttatatttcttttttcgaaATGGTAA
TCTTTATACATTTgtaatttacattttttgtagaaaataatttacataag
tgcttaaatctttaaattttatatttgtCTTACAAAACCCTCTCAGTTTT
CACATTACGTTTCCTTAGAATACTTTCGC

Coding sequence (CDS) from alignment at scaffold_100:620033..622011+

>TCONS_00045694 ID=TCONS_00045694|Name=TCONS_00045694|organism=Clytia hemisphaerica|type=CDS|length=3102bp|location=Sequence derived from alignment at scaffold_100:620033..622011+ (Clytia hemisphaerica)
ATGAAGCAACGCCGATCACTCAGCactttcttcaaagtttttgttttggt
aATAACCGTCTTCGCCCTCCGTAAATCATGGATTGTGAACTCAGAGGATG
GCTTAAAGACACTCAGAAGGCAAAGTCGACATTTAATGACCAATGCTAAT
GACGATCGTTGTACACATTCGAAAGGAGCCATTGAGGAATTTCCGAAAGA
TTTTTTAACTCAGGAACAAAGGGAGGAGGGTGGTATCATAATCCATATCC
TCATCACGTGTTATATGTTTGGACTTCTGGCTGTTGTTTGCGACGATTAT
TTCGTGTTATCCTTATATCATATCTGCTCACGTCTCAAAATGTCCAAAGA
CGTAGCCGGGGCAACATTTATGGCCATCGGCTCCTCAGCGCCGACCCTTT
TTATCGCTGTTGTCTCAATCTTCTTCACAGAGAATGCAGGAGACGTTGGC
CTCGGCACCGTAGTTGGATCTACTATTTTTAACACGCTTTTTATCGTTGC
TATATGTTCACTGGCTGCTTCGGCTCCCGTAAGAGTTTCCACGTGGCCGC
TGATTCGAGATGCGTTTGTTTACACGCTTGGAACTTTTACACTCGTTTTC
ACTGTTCGTGACCGGCAAGTCTTCTGGTGGGAAGCTCTCATCTTCGTATA
CATTTACATCTTGTATATCATAATCATGTATTTCAATAGACCACTATCCA
GGCATTTTAACAGACTTTTAGACTCGATGTGTGGGCAATGCGAAACAATA
CAAGATGAGTTGGAAATGTCGTCTGCAGATTTTCTAACATCCCCGAAACC
TGAACCACGACAAAAAGCCAAAGAACAAGAACAGAAAAAGTTGGATCGAG
AAAGAGCTCAAGAAGACCTTTCCGTTGATGATTCTTATACAGCGGAATTA
GAACAATTTGAGAATAAGCAGCAATCACCGTTACGTATTCCAGACGGATG
TGCTAACAAGATAACCTGGATTCTCGGCTTCCCTGTTATATTTCTCTTCT
ATTTCACCATTCCACCTTGCTGTAAAAAGAAGTGGTCAGAGTGGTATCTA
GTGACTTTCTCCATGTCTGTGTTATGGATGGGGCTACTATCATATATCTT
AGTATGGATGGTTTGCGTTATcggtttcactttcgatatccCTGATTGTA
TTATGGGTATGACTTTTCTGGCCGCTGGGTCCAGTATTCCCGACGTTATG
GCGTCAGTGATCGTGATACGACAAGGATCGGCTGATATGGCTCTATCTAA
TGCGATCGGGAGTAATGTCTTTGATATGTTATGTCTGGGTGTTCCTTGGT
TTATGAAGTCCGCCTTTATGGAGCCAGGGACGCCGGTCCAGATACAGAGC
CAGTCGATTATGATTTCAGCCTTGCTTTTGATTGGATCAATTGTGTTTAC
TGTGATTGCAATACATTTGAACGATTGGAAATTAGACTTTAAATTGGGCA
TCATTTTCTTGTTGGTGTACATGGTTTTCATTGCTCTGGCAACTTTGTTG
GAGTTCCTTGCTTGCCCGTGTGTTTTGGATGACTTTCTGCCAGCAACGTA
AATGAAGCAACGCCGATCACTCAGCactttcttcaaagtttttgttttgg
taATAACCGTCTTCGCCCTCCGTAAATCATGGATTGTGAACTCAGAGGAT
GGCTTAAAGACACTCAGAAGGCAAAGTCGACATTTAATGACCAATGCTAA
TGACGATCGTTGTACACATTCGAAAGGAGCCATTGAGGAATTTCCGAAAG
ATTTTTTAACTCAGGAACAAAGGGAGGAGGGTGGTATCATAATCCATATC
CTCATCACGTGTTATATGTTTGGACTTCTGGCTGTTGTTTGCGACGATTA
TTTCGTGTTATCCTTATATCATATCTGCTCACGTCTCAAAATGTCCAAAG
ACGTAGCCGGGGCAACATTTATGGCCATCGGCTCCTCAGCGCCGACCCTT
TTTATCGCTGTTGTCTCAATCTTCTTCACAGAGAATGCAGGAGACGTTGG
CCTCGGCACCGTAGTTGGATCTACTATTTTTAACACGCTTTTTATCGTTG
CTATATGTTCACTGGCTGCTTCGGCTCCCGTAAGAGTTTCCACGTGGCCG
CTGATTCGAGATGCGTTTGTTTACACGCTTGGAACTTTTACACTCGTTTT
CACTGTTCGTGACCGGCAAGTCTTCTGGTGGGAAGCTCTCATCTTCGTAT
ACATTTACATCTTGTATATCATAATCATGTATTTCAATAGACCACTATCC
AGGCATTTTAACAGACTTTTAGACTCGATGTGTGGGCAATGCGAAACAAT
ACAAGATGAGTTGGAAATGTCGTCTGCAGATTTTCTAACATCCCCGAAAC
CTGAACCACGACAAAAAGCCAAAGAACAAGAACAGAAAAAGTTGGATCGA
GAAAGAGCTCAAGAAGACCTTTCCGTTGATGATTCTTATACAGCGGAATT
AGAACAATTTGAGAATAAGCAGCAATCACCGTTACGTATTCCAGACGGAT
GTGCTAACAAGATAACCTGGATTCTCGGCTTCCCTGTTATATTTCTCTTC
TATTTCACCATTCCACCTTGCTGTAAAAAGAAGTGGTCAGAGTGGTATCT
AGTGACTTTCTCCATGTCTGTGTTATGGATGGGGCTACTATCATATATCT
TAGTATGGATGGTTTGCGTTATcggtttcactttcgatatccCTGATTGT
ATTATGGGTATGACTTTTCTGGCCGCTGGGTCCAGTATTCCCGACGTTAT
GGCGTCAGTGATCGTGATACGACAAGGATCGGCTGATATGGCTCTATCTA
ATGCGATCGGGAGTAATGTCTTTGATATGTTATGTCTGGGTGTTCCTTGG
TTTATGAAGTCCGCCTTTATGGAGCCAGGGACGCCGGTCCAGATACAGAG
CCAGTCGATTATGATTTCAGCCTTGCTTTTGATTGGATCAATTGTGTTTA
CTGTGATTGCAATACATTTGAACGATTGGAAATTAGACTTTAAATTGGGC
ATCATTTTCTTGTTGGTGTACATGGTTTTCATTGCTCTGGCAACTTTGTT
GGAGTTCCTTGCTTGCCCGTGTGTTTTGGATGACTTTCTGCCAGCAACGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029206XLOC_029206Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045694-proteinTCONS_00045694-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045694-exon-scaffold_100-1491911889:620033..621569TCONS_00045694-exon-scaffold_100-1491911889:620033..621569Clytia hemisphaericaexon
TCONS_00045694-exon-scaffold_100-1510915933:620033..621569TCONS_00045694-exon-scaffold_100-1510915933:620033..621569Clytia hemisphaericaexon
TCONS_00045694-exon-scaffold_100-1575043694:620033..621569TCONS_00045694-exon-scaffold_100-1575043694:620033..621569Clytia hemisphaericaexon
TCONS_00045694-exon-scaffold_100-1491911889:621650..622011TCONS_00045694-exon-scaffold_100-1491911889:621650..622011Clytia hemisphaericaexon
TCONS_00045694-exon-scaffold_100-1510915933:621650..622011TCONS_00045694-exon-scaffold_100-1510915933:621650..622011Clytia hemisphaericaexon
TCONS_00045694-exon-scaffold_100-1575043694:621650..622011TCONS_00045694-exon-scaffold_100-1575043694:621650..622011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:620033..622011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0629782	0.0204712	0.308998	0.186035	0.0283099	0.0223709	7.36813	8.28765	2.03437	1.46811	3.23281	3.01991	6.14311	4.87176	4.12445	9.2361	5.45267	5.10424	0.58021	0.396981	3.28811	3.56406	1.94966	2.01324	3.35831	4.16391	0.66206	0	0.0233003	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
IPR004481K/Na/Ca-exchanger
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00045694 vs. Swiss-Prot (Human)
Match: NCKX5 (Sodium/potassium/calcium exchanger 5 OS=Homo sapiens GN=SLC24A5 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.225e-106
Identity = 183/463 (39.52%), Postives = 278/463 (60.04%), Query Frame = 1 
Query:  265 NANDDRCTHSKGAIEEFPKDFLTQEQREEGGIIIHILITCYMFGLLAVVCDDYFVLSLYHICSRLKMSKDVAGATFMAIGSSAPTLFIAVVSIFFTENAGDVGLGTVVGSTIFNTLFIVAICSLAASAPVRVSTWPLIRDAFVYTLGTFTLVFTVRDRQVFWWEAXXXXXXXXXXXXXXXXNRPLSRHFNRLLDSMCGQCETIQDELEMSSADFLTSPKPEPRQKAKEQEQKKLDRE-RAQEDLSVDDSYTAELE-------QFENKQQSPLRIPDGCANKITWILGFPVIFLFYFTIPPCCKKKWSEWYLVTFSMSVLWMGLLSYILVWMVCVIGFTFDIPDCIMGMTFLAAGSSIPDVMASVIVIRQGSADMALSNAIGSNVFDMLCLGVPWFMKSAFMEPGTPVQIQSQSIMISALLLIGSIVFTVIAIHLNDWKLDFKLGIIFLLVYMVFIALATLLEF 1629
              N  +C  S  +  EFP+ F T+++R +GGIII+ LI  YMF  +++VCD+YF+ SL  I   L +S+DVAG TFMA GSSAP L  A + +F T+  GD+G+ T++GS I+N L I A C L ++    +S WPL RD   YT+    ++  + D QV+W+E  + + IY LY++++ F+  ++++  +   S C  C  +   +E S        + +P    +++ Q  + R+ R    +  +DS  ++L        Q      S   +P+    +I W+L  P+I L + T P C KK W  ++++TF MS +W+   +YILVWMV + G T +IPD +MG+T LAAG+SIPD +ASV+V R+G  DMA+SN +GSNVFDMLCLG+PWF+K+AF+    P ++ S+ +    + L  SI+F  +A+H N WKLD KLGI+ LL Y+    L+ L E 
Sbjct:   40 TGNSTQCVISPSS--EFPEGFFTRQERRDGGIIIYFLIIVYMFMAISIVCDEYFLPSLEIISESLGLSQDVAGTTFMAAGSSAPELVTAFLGVFITK--GDIGISTILGSAIYNLLGICAACGLLSNTVSTLSCWPLFRDCAAYTISAAAVLGIIYDNQVYWYEGALLLLIYGLYVLVLCFDIKINQYIIKKC-SPC--CACLAKAMERS--------EQQPLMGWEDEGQPFIRRQSRTDSGIFYEDSGYSQLSISLHGLSQVSEDPPSVFNMPEADLKRIFWVLSLPIITLLFLTTPDCRKKFWKNYFVITFFMSAIWISAFTYILVWMVTITGETLEIPDTVMGLTLLAAGTSIPDTIASVLVARKGKGDMAMSNIVGSNVFDMLCLGIPWFIKTAFINGSAPAEVNSRGLTYITISLNISIIFLFLAVHFNGWKLDRKLGIVCLLSYLGLATLSVLYEL 487
The following BLAST results are available for this feature:
BLAST of TCONS_00045694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX51.225e-10639.52Sodium/potassium/calcium exchanger 5 OS=Homo sapie... [more]
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