TCONS_00045694-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045694-protein
Unique Name	TCONS_00045694-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	516

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045694-protein ID=TCONS_00045694-protein|Name=TCONS_00045694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MKQRRSLSTFFKVFVLVITVFALRKSWIVNSEDGLKTLRRQSRHLMTNAN
DDRCTHSKGAIEEFPKDFLTQEQREEGGIIIHILITCYMFGLLAVVCDDY
FVLSLYHICSRLKMSKDVAGATFMAIGSSAPTLFIAVVSIFFTENAGDVG
LGTVVGSTIFNTLFIVAICSLAASAPVRVSTWPLIRDAFVYTLGTFTLVF
TVRDRQVFWWEALIFVYIYILYIIIMYFNRPLSRHFNRLLDSMCGQCETI
QDELEMSSADFLTSPKPEPRQKAKEQEQKKLDRERAQEDLSVDDSYTAEL
EQFENKQQSPLRIPDGCANKITWILGFPVIFLFYFTIPPCCKKKWSEWYL
VTFSMSVLWMGLLSYILVWMVCVIGFTFDIPDCIMGMTFLAAGSSIPDVM
ASVIVIRQGSADMALSNAIGSNVFDMLCLGVPWFMKSAFMEPGTPVQIQS
QSIMISALLLIGSIVFTVIAIHLNDWKLDFKLGIIFLLVYMVFIALATLL
EFLACPCVLDDFLPAT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029206	XLOC_029206	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045694	TCONS_00045694	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004837	NaCa_Exmemb
IPR004481	K/Na/Ca-exchanger

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 83..227 e-value: 4.3E-21 score: 75.3 coord: 348..498 e-value: 1.8E-24 score: 86.3
IPR004481	Sodium/potassium/calcium exchanger	TIGRFAM	TIGR00367	TIGR00367	coord: 81..493 e-value: 7.9E-67 score: 223.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..289

Blast

[Close]

BLAST of TCONS_00045694-protein vs. Swiss-Prot (Human)
Match: NCKX5 (Sodium/potassium/calcium exchanger 5 OS=Homo sapiens GN=SLC24A5 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 3.533e-116
Identity = 183/463 (39.52%), Postives = 278/463 (60.04%), Query Frame = 0

Query:   48 NANDDRCTHSKGAIEEFPKDFLTQEQREEGGIIIHILITCYMFGLLAVVCDDYFVLSLYHICSRLKMSKDVAGATFMAIGSSAPTLFIAVVSIFFTENAGDVGLGTVVGSTIFNTLFIVAICSLAASAPVRVSTWPLIRDAFVYTLGTFTLVFTVRDRQVFWWEALIFVYIYILYIIIMYFNRPLSRHFNRLLDSMCGQCETIQDELEMSSADFLTSPKPEPRQKAKEQEQKKLDRE-RAQEDLSVDDSYTAELE-------QFENKQQSPLRIPDGCANKITWILGFPVIFLFYFTIPPCCKKKWSEWYLVTFSMSVLWMGLLSYILVWMVCVIGFTFDIPDCIMGMTFLAAGSSIPDVMASVIVIRQGSADMALSNAIGSNVFDMLCLGVPWFMKSAFMEPGTPVQIQSQSIMISALLLIGSIVFTVIAIHLNDWKLDFKLGIIFLLVYMVFIALATLLEF 502
              N  +C  S  +  EFP+ F T+++R +GGIII+ LI  YMF  +++VCD+YF+ SL  I   L +S+DVAG TFMA GSSAP L  A + +F T+  GD+G+ T++GS I+N L I A C L ++    +S WPL RD   YT+    ++  + D QV+W+E  + + IY LY++++ F+  ++++  +   S C  C  +   +E S        + +P    +++ Q  + R+ R    +  +DS  ++L        Q      S   +P+    +I W+L  P+I L + T P C KK W  ++++TF MS +W+   +YILVWMV + G T +IPD +MG+T LAAG+SIPD +ASV+V R+G  DMA+SN +GSNVFDMLCLG+PWF+K+AF+    P ++ S+ +    + L  SI+F  +A+H N WKLD KLGI+ LL Y+    L+ L E 
Sbjct:   40 TGNSTQCVISPSS--EFPEGFFTRQERRDGGIIIYFLIIVYMFMAISIVCDEYFLPSLEIISESLGLSQDVAGTTFMAAGSSAPELVTAFLGVFITK--GDIGISTILGSAIYNLLGICAACGLLSNTVSTLSCWPLFRDCAAYTISAAAVLGIIYDNQVYWYEGALLLLIYGLYVLVLCFDIKINQYIIKKC-SPC--CACLAKAMERS--------EQQPLMGWEDEGQPFIRRQSRTDSGIFYEDSGYSQLSISLHGLSQVSEDPPSVFNMPEADLKRIFWVLSLPIITLLFLTTPDCRKKFWKNYFVITFFMSAIWISAFTYILVWMVTITGETLEIPDTVMGLTLLAAGTSIPDTIASVLVARKGKGDMAMSNIVGSNVFDMLCLGIPWFIKTAFINGSAPAEVNSRGLTYITISLNISIIFLFLAVHFNGWKLDRKLGIVCLLSYLGLATLSVLYEL 487

The following BLAST results are available for this feature:

BLAST of TCONS_00045694-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045694-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCKX5	3.533e-116	39.52	Sodium/potassium/calcium exchanger 5 OS=Homo sapie...	[more]

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TCONS_00045694-protein (polypeptide) - C. hemisphaerica