|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045693 ID=TCONS_00045693|Name=TCONS_00045693|organism=Clytia hemisphaerica|type=transcript|length=175bp
TATCAATTCATTCTAAGCCTCACATCACGCAAATAGACTGACAAGACGAG
AGGTTTGAAAACGAGCAGTGCAAACACGCATGCATAGGAGAGATGCAAAA
ATCGAAGTAGACTGGTAGCCGGTTTCTGTTCTCTTTCTCCGTCAATGATG
GGCGTGGACCATGGGAAGAGAAGGA Run BLAST on NCBI transcript from alignment at scaffold_100:619144..624204+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045693 ID=TCONS_00045693|Name=TCONS_00045693|organism=Clytia hemisphaerica|type=transcript|length=5061bp|location=Sequence derived from alignment at scaffold_100:619144..624204+ (Clytia hemisphaerica)
TATCAATTCATTCTAAGGTTCAATGCTGTTGTACCATAGTGGTAAGTTTA
TGGGATTaaatccactgacctttataaaccctgaTCCAAGCTGAAAGTGG
TACCTGCAAAGAAGTGGCTAtagtgaaaaaaagaaaaatacggTGCTACA
TCACTTGTGTCCAATcgaagtagatctagcgctctcgatgcggAAAcctc
tttcaaaaaaactccgatcaaaatattttggttggcCGGTATTGAGAAAC
TGCCTCCAGGgtttatataaagctcagtgGTTTAAATCTCTTTCCCTAGT
ATTTACAAACATTTTGCTAACAACTCTTTCTAAAACATTTTATCAAAGCT
GCAGAGCCGCTATAGCGAATTGAAAAGTGACTAAACTTTTCGTTTGAGAC
CTAAAAAGGGAGATTTTGCATTTCACTGACCTGCACTGacaagaatacac
gtttttataagaacatccagaatgtttgaagccttcggatgttctaaatt
ttttgagttttaagcctagaattgttcttaaaatgttcttattttcacca
ttttttgagcatttttgccaatttttctaagaaaccgGCTGTTTTCGagt
cagcaaagccttaaaaagttcttaacttgttcttaacatttcggccatcg
aagccttatgttcttatatagtttattcttataaaaaacgtgtactggaG
ATCAAGGCATGgttcaaataaacaaatatttttcgaTTGAaattcagttt
tgatttttttgaaagtgaagaAATCGATTGTGTATTGAAGCGTGCACAAA
AGATGCCATTTTATACTCAAAGTGAGCTCCGCAAAAATTATATGGAGGTA
ATCAAAACTCTAAtagacaaaacaaaaaatagtaaaataaagatttttat
gaAGATTTAACAAGTATAAGCTGACAATTGGAAATTTGTCATTGTATTAC
TCTCTGATAGTCATATTTGGGAAAACATTCATTAAAGATGTCTCGTTAGA
TTGAAACACAAAATGAAGCAACGCCGATCACTCAGCactttcttcaaagt
ttttgttttggtaATAACCGTCTTCGCCCTCCGTAAATCATGGATTGTGA
ACTCAGAGGATGGCTTAAAGACACTCAGAAGGCAAAGTCGACATTTAATG
ACCAATGCTAATGACGATCGTTGTACACATTCGAAAGGAGCCATTGAGGA
ATTTCCGAAAGATTTTTTAACTCAGGAACAAAGGGAGGAGGGTGGTATCA
TAATCCATATCCTCATCACGTGTTATATGTTTGGACTTCTGGCTGTTGTT
TGCGACGATTATTTCGTGTTATCCTTATATCATATCTGCTCACGTCTCAA
AATGTCCAAAGACGTAGCCGGGGCAACATTTATGGCCATCGGCTCCTCAG
CGCCGACCCTTTTTATCGCTGTTGTCTCAATCTTCTTCACAGAGAATGCA
GGAGACGTTGGCCTCGGCACCGTAGTTGGATCTACTATTTTTAACACGCT
TTTTATCGTTGCTATATGTTCACTGGCTGCTTCGGCTCCCGTAAGAGTTT
CCACGTGGCCGCTGATTCGAGATGCGTTTGTTTACACGCTTGGAACTTTT
ACACTCGTTTTCACTGTTCGTGACCGGCAAGTCTTCTGGTGGGAAGCTCT
CATCTTCGTATACATTTACATCTTGTATATCATAATCATGTATTTCAATA
GACCACTATCCAGGCATTTTAACAGACTTTTAGACTCGATGTGTGGGCAA
TGCGAAACAATACAAGATGAGTTGGAAATGTCGTCTGCAGATTTTCTAAC
ATCCCCGAAACCTGAACCACGACAAAAAGCCAAAGAACAAGAACAGAAAA
AGTTGGATCGAGAAAGAGCTCAAGAAGACCTTTCCGTTGATGATTCTTAT
ACAGCGGAATTAGAACAATTTGAGAATAAGCAGCAATCACCGTTACGTAT
TCCAGACGGATGTGCTAACAAGATAACCTGGATTCTCGGCTTCCCTGTTA
TATTTCTCTTCTATTTCACCATTCCACCTTGCTGTAAAAAGAAGTGGTCA
GAGTGGTATCTAGTGACTTTCTCCATGTCTGTGTTATGGATGGGGCTACT
ATCATATATCTTAGTATGGATGGTTTGCGTTATcggtttcactttcgata
tccCTGATTGTATTATGGGTATGACTTTTCTGGCCGCTGGGTCCAGTATT
CCCGACGTTATGGCGTCAGTGATCGTGATACGACAAGGATCGGCTGATAT
GGCTCTATCTAATGCGATCGGGAGTAATGTCTTTGATATGTTATGTCTGG
GTGTTCCTTGGTTTATGAAGTCCGCCTTTATGGAGCCAGGGACGCCGGTC
CAGATACAGAGCCAGTCGATTATGATTTCAGCCTTGCTTTTGATTGGATC
AATTGTGTTTACTGTGATTGCAATACATTTAAACGATTGGAAATTAGACT
TTAAATTGGGcatcatttttcttttggtctacATGGTTTTCATNTGATTG
CAATACATTTGAACGATTGGAAATTAGACTTTAAATTGGGCATCATTTTC
TTGTTGGTGTACATGGTTTTCATTGCTCTGGCAACTTTGTTGGAGTTCCT
TGCTTGCCCGTGTGTTTTGGATGACTTTCTGCCAGCAACGTAAAGTATTA
aacaagtttttgaaagaccaaaatggactaaaatgcaactaaaaagtact
ttttaaaattaatttatatttcttttttcgaaATGGTAATCTTTATACAT
TTgtaatttacattttttgtagaaaataatttacataagtgcttaaatct
ttaaattttatatttgtCTTACAAAACCCTCTCAGTTTTCACATTACGTT
TCCTTAGAATACTTTCGCACTTTCAAGGATAGAAAATGTTTATCCGAAAC
CGCTCAGTCGCTCTATCTCGAACTTTGTAATCTTTATTGCCAAGATAATC
TACGTTAACATTGTACTTTTTCTTCATGAGCCAGGAGGCGGTGTAACTGG
AACTCTAATTAAATATTGGACTTCTCCGCTCAAGCTCTAGTTTAGAAGGT
CGACTTTTTGTCCTACTTCTGACATCGACATTCTGCAAAgataaaccttt
tcataaattacgtcacgaacgtCACTTGCCTCATATTCAAACAAtaacca
tggtgattatgtctcttgagactaTAAATGATtgttttatgaataggaag
tagttttaataaaatccactgaGAATTAATCACCatagcaataatttcaa
aacgaggaaaGGTCTATTTGACAGGAAGTCGGCCGTTTAAAGTTAGGTCT
AAGCTGCTCAAACCTTTAGATGCCTAAAAAAGATGCAAGATTTTTTTCGC
CCAGTAAAGATTTCGCTATGTAGTTTGTTGCCGTAGCCGGGAGCTGTTGA
AAGTTCGAAATATTATTTGCGATACAGACTCAGACCGTTGCAGTTTTCAT
TTTAGAGTTCGTCGACTTgtcaagtttttttaaatattcagaAAGTATAA
GTTCGCCTCTTAAGCGGTCGATTTTTAGTGTCACTACGAAACCGCTTCTC
GAAGTGATTCAAAAATTCTAACTCCCATTGATCTGAAGCTAGTATGTGGT
CCAGATCATCAATAGCTGTATGTAAATGCTCTTCCAGTGAGCGGTCAGAG
AAAGGGAGAGGAGGTAACAGTCTAGCTGGTATGACATCGATTGTGGTGAT
GGTGGATAGAGAACGATTGCTTTTTGTGTNCTGGTATGACATCGATTGTG
GTAATGGTGGATAGAGAACGATTGCTTTTTGTGTCTATCTCTTCCACTTT
GAAATGAACATGTTTGTTGATCTAGGGaataaaaagaattcaaaattaaa
tttcatgTATTATATGATGGAGTCTTCAAAACTGacactcgaatgtctcc
ttcactcaaacaggttttctggtcctcagttaacaatgccttttaAACCC
AATCTCCATAACTCTAAATTTCCACAAATTTATGTTCGCCGtccgtgttc
gagttatagagacccAACTGTGTTTCTTTAAGTTTTGTATTTAGCCATAT
TggtcttatagaaaaaaagaaacttcaGTCGATGGCAATGTTTCGACGTC
TATAACCAAACCTCGCAGCTTCGAATTCATCTTTCTTATAGAAGGTGGCC
AATCCGTAGCATCTTTCGTGTCaattttttgcctattttgGGGTTTAGGA
GTTTTGTCTACAACGTCGGTTTTTTGGCCATAAAAATTTTTGCCAGGCCT
AAAACGCGGGgcccctctcaaaaaagtttcaaaatcctATCTACTTTCAA
ACCAATCACATGCGGTTGAGTCCCACGAACGATGCTACGGATCATAAGGA
TTGACCCCCTACTATTAGATAAAGGTCTGTAATCCAGGCTAGTTAACATT
TTAACATTGATTTTTATAACGTTACGCGAGTGTGAGTTTTGAGGTATTAG
AAAATTGAATGTCTTGATTTTTCCACCAAACTGACTAGGTATATATTCAT
TTGACAATGCACCCTAACCGATTCATTAAGCATAAAAAGTCTCAAAAGGG
AGGAATTTTTAAGAGGTTAATGAAGTAAAAACGTCTTGAACAAGAGAGGA
CACAGTAGACTTttgcttattcgaacttctataattcgaatttttctata
aCAAGAACTAAATCCCATCccaatactttctataattcgaatctgtCTCT
CTATAATTTGAACGAACAAGATTCCCCTGTTCGAATTAACGCGCGTCAAC
TGTATTCCTCTCTGAGGCCAACTACTAAGGtcagtgtttttaaaattgGA
AAAGTTTTCTCACCTTAGGGTGTGTTTTATTCTTAACTCGTTTTAAGATC
ACTTGAAACATTTTCCACAATAAATTCGAATCCTTGTTCTTTTTATCCTT
CAGCCTCACATCACGCAAATAGACTGACAAGACGAGAGGTTTGAAAACGA
GCAGTGCAAACACGCATGCATAGGAGAGATGCAAAAATCGAAGTAGACTG
GTAGCCGGTTTCTGTTCTCTTTCTCCGTCAATGATGGGCGTGGACCATGG
GAAGAGAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045693-exon-scaffold_100-1491911889:619144..619160 | TCONS_00045693-exon-scaffold_100-1491911889:619144..619160 | Clytia hemisphaerica | exon |
| TCONS_00045693-exon-scaffold_100-1510915933:619144..619160 | TCONS_00045693-exon-scaffold_100-1510915933:619144..619160 | Clytia hemisphaerica | exon |
| TCONS_00045693-exon-scaffold_100-1575043694:619144..619160 | TCONS_00045693-exon-scaffold_100-1575043694:619144..619160 | Clytia hemisphaerica | exon |
| TCONS_00045693-exon-scaffold_100-1491911889:624047..624204 | TCONS_00045693-exon-scaffold_100-1491911889:624047..624204 | Clytia hemisphaerica | exon |
| TCONS_00045693-exon-scaffold_100-1510915933:624047..624204 | TCONS_00045693-exon-scaffold_100-1510915933:624047..624204 | Clytia hemisphaerica | exon |
| TCONS_00045693-exon-scaffold_100-1575043694:624047..624204 | TCONS_00045693-exon-scaffold_100-1575043694:624047..624204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:619144..624204 + |
Blast
The following BLAST results are available for this feature:
|
