Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045691 ID=TCONS_00045691|Name=TCONS_00045691|organism=Clytia hemisphaerica|type=transcript|length=2151bpRun BLAST on NCBI protein sequence of TCONS_00045691-protein >TCONS_00045691-protein ID=TCONS_00045691-protein|Name=TCONS_00045691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp LDYIIIMSKRKYKIAQLSDEEEEKSENLGGLNLFRKLKAAETENSKPGISRun BLAST on NCBI transcript from alignment at scaffold_100:612369..617701+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045691 ID=TCONS_00045691|Name=TCONS_00045691|organism=Clytia hemisphaerica|type=transcript|length=5333bp|location=Sequence derived from alignment at scaffold_100:612369..617701+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:612369..617701+ >TCONS_00045691 ID=TCONS_00045691|Name=TCONS_00045691|organism=Clytia hemisphaerica|type=CDS|length=17280bp|location=Sequence derived from alignment at scaffold_100:612369..617701+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045691 vs. Swiss-Prot (Human)
Match: ERCC1 (DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.609e-69 Identity = 109/188 (57.98%), Postives = 149/188 (79.26%), Query Frame = 2 Query: 440 RQRGNPILKHIRNIPWEYGDIIPDYEIGERACALYLSMRYHSLNPDYIHERLKKLGNMYXXXXXXXXXXXXNSKPGLKELGRIAMYSNLTMILAWTFEEAGRYLETYKSYEFKPPDIIQQRTETDHLSKVQDFLTTVKSVNKTDVLTLLSTFGSVLNIVNATKQELGDCPGFGSQKATRLYQAFNEPF 1003 RQRGNP+LK +RN+PWE+GD+IPDY +G+ CAL+LS+RYH+L+PDYIH RL+ LG + LRVLLVQVDV + + LKEL ++ + ++ T+ILAW+ EEAGRYLETYK+YE KP D++ ++ E D +S+V + LTTVKSVNKTD TLL+TFGS+ ++ A++++L CPG G QKA RL+ +EPF Sbjct: 106 RQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293 The following BLAST results are available for this feature:
BLAST of TCONS_00045691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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