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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045678 ID=TCONS_00045678|Name=TCONS_00045678|organism=Clytia hemisphaerica|type=transcript|length=2545bp
acaaaaaataaattttcagaaacaaAATCATACATCAAGGATATCTAGAA
AAGACTTTATGGCCGGCGACTTTGAGCTCATATTGGGCTTTGAGGTCGGC
GAAAATCGCCGGTCGCCGGCCTCAAATAAACCCCCtgctatgtggcgttt
ttttgcaaacttcaaaaaactgatttttgtcccgcctttgcgggacttta
gcttaagtgcttgagtgcagcatagggtacaaagtccaaacatgcgtttc
ccgtaatttttgtgtgaagagttaggtctacactgccaggcaaaaaaaca
aaactcgaaaaagatcaaaataaatatttagaaGCAGAAAAAGCGGCCAT
ACAGACATGTAACAACACATACAACAATTACATCAGAGACAATATaataa
atgacaaaaagaacagcaaactaattttctctttcattaaatcaaaaaaa
agacaaatatcACCGGAGTTAGCCCATtactgtaacttggtctaatgtcg
acacccctcctctaattccgacaccctttttatcagctgaaactgttttt
ctttgcttagtggtcagagaggcaTAATCCTTTtccaatcagtgattcaa
gctttcatattatttctttctctaaagaagggtgtcggaattagacgagg
gatgtcgatattagaccaacttacggtacttgACAATGGTCGCATCCAAA
TAGAGGATTCTGGCATTGCAGAAACTTTAAACAAACAAGCTTTTTCTCTG
TAGACGACGGAATTTCGTCTGAAATCGACGATCCGCAAGGCCCACCAATC
AGTCAGACAAATCNGTAGACGACGGAATTTCGCCTGAAATCGACGATCCG
CAAGGCCCACCAATCAGTCAGACAAATCTCCTTCACCAAAAACGgcattc
ttaaatttttaaagGGTCTAGATCCAAACAAAGCCAGCGGTCCAGACGGC
ATTTCAACAAGGATCCTCAAAGAATGTGCAGATGAGATCTCAGacttttt
tatattattatttACCACATCATTACGTCAAGGGAAAATACCAAACGATT
GGAAACAAGCCATTATTACCCCATTATAGAAAGGTGGGaataaaaattgc
tcaaaaccaGAGAACTATAGGCCTGTTAGTTTAACTTCCACAACCTGTAA
AATTATGGAACATATTATCCACACACACATGTCACATTTTGATCAAGAAA
ACATACTTTCTGATACTCAGCATGGTATTGCAACTAAACTCATTCAAACT
ATCCACAATATTGCAAAAGCAGTCAACAACAAAGAACAGATTGATTCTGT
CTTGCTGGACTTCAGCAAGGCTTTTGATAAAGTAGGACATCGAAAATTAT
TGCTCAAAATAAAGCATTATGGTATAAATGGCATAAATGACATGCCACTT
GAGACAGACTCAAAACTGGCTTTATTTGCTGATGATTGTTACCTTTACCA
AGTTATCTCATCCAGTCCATCTGTTGATATTTACAAGGACTTTGGAAAAT
TGTGAAACCGAGTTAAGATTTaggattttgttttttatctctttttctaa
tttttttctatatTCCCATATCATCTTGTATGAAAATAAAAGGGTgaatt
ttagaaaaagtatATGATTTTTCTGCAATTCACCCAAAAGTTTTGTATAC
AGCATAGTtaattttttactcttttttctagttgaagaagaaaaagaata
aaGTCAAATTGAATAGTATAGGTTATGAAACGCTTTATTGCCAACAACTT
GTGGGATGGTCATCTTCAGATCATGGATATAAATTATACACTTTTTGCAG
GTTTGTCTGTAGGTTTTTCTGGGTGTGTGTTTAGCTTTCAACTCAAGTGA
CGTTTCAATGTCGTACTGTATATACTCATATATGATATACTGCAGTAATC
TTTTAGCTTACATTCTCAAATCTGCCTTTATTTCTATTCTGTATCTggtg
ttatttaaaaaatggagGTTGTCTCAAGGAATCTTTTAGATAAGTACCTA
AATCTAaagtttttgagtattttttcatcaagataCCCTCTTCGATTCCA
ATaacctggagatccatgctatgatttcttcttttatatactGATGATGA
AATGAATAGTATGGTTTGGGCTATGAGTTTCAATTTCCCATCTCTAAACA
GTTGAAAACTCAGTTATTCTCACTGGTCATACTTCCAAAAAAACGCAACt
ttcttaaattgttttaattttagcaaGTGAGGACaacgctaaattcgaat
ttcctacTGTAAATTCTTCGAGCCAGAAATCTCCCTTTCAGCCCTGAACC
TTTACACATCAGTTTATAAAAATACaagacgggtctcctgtctacgtTGC
GTTTCCACATGACGAtttttcattcttcaaaaatttcTGATTGATTCATC
TGGTCAATTTATAAAATGTATGAGTGATAAAATGTACAAAGCGATCTAAG
TTTTGGGGCTAAATTTGATATCTGTAAGagcatagtgcggaaaggggtct
gatcccccttcttaaatgatccccccttcttggcatcctcCAACC Run BLAST on NCBI transcript from alignment at scaffold_100:476421..478965+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045678 ID=TCONS_00045678|Name=TCONS_00045678|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at scaffold_100:476421..478965+ (Clytia hemisphaerica)
acaaaaaataaattttcagaaacaaAATCATACATCAAGGATATCTAGAA
AAGACTTTATGGCCGGCGACTTTGAGCTCATATTGGGCTTTGAGGTCGGC
GAAAATCGCCGGTCGCCGGCCTCAAATAAACCCCCtgctatgtggcgttt
ttttgcaaacttcaaaaaactgatttttgtcccgcctttgcgggacttta
gcttaagtgcttgagtgcagcatagggtacaaagtccaaacatgcgtttc
ccgtaatttttgtgtgaagagttaggtctacactgccaggcaaaaaaaca
aaactcgaaaaagatcaaaataaatatttagaaGCAGAAAAAGCGGCCAT
ACAGACATGTAACAACACATACAACAATTACATCAGAGACAATATaataa
atgacaaaaagaacagcaaactaattttctctttcattaaatcaaaaaaa
agacaaatatcACCGGAGTTAGCCCATtactgtaacttggtctaatgtcg
acacccctcctctaattccgacaccctttttatcagctgaaactgttttt
ctttgcttagtggtcagagaggcaTAATCCTTTtccaatcagtgattcaa
gctttcatattatttctttctctaaagaagggtgtcggaattagacgagg
gatgtcgatattagaccaacttacggtacttgACAATGGTCGCATCCAAA
TAGAGGATTCTGGCATTGCAGAAACTTTAAACAAACAAGCTTTTTCTCTG
TAGACGACGGAATTTCGTCTGAAATCGACGATCCGCAAGGCCCACCAATC
AGTCAGACAAATCNGTAGACGACGGAATTTCGCCTGAAATCGACGATCCG
CAAGGCCCACCAATCAGTCAGACAAATCTCCTTCACCAAAAACGgcattc
ttaaatttttaaagGGTCTAGATCCAAACAAAGCCAGCGGTCCAGACGGC
ATTTCAACAAGGATCCTCAAAGAATGTGCAGATGAGATCTCAGacttttt
tatattattatttACCACATCATTACGTCAAGGGAAAATACCAAACGATT
GGAAACAAGCCATTATTACCCCATTATAGAAAGGTGGGaataaaaattgc
tcaaaaccaGAGAACTATAGGCCTGTTAGTTTAACTTCCACAACCTGTAA
AATTATGGAACATATTATCCACACACACATGTCACATTTTGATCAAGAAA
ACATACTTTCTGATACTCAGCATGGTATTGCAACTAAACTCATTCAAACT
ATCCACAATATTGCAAAAGCAGTCAACAACAAAGAACAGATTGATTCTGT
CTTGCTGGACTTCAGCAAGGCTTTTGATAAAGTAGGACATCGAAAATTAT
TGCTCAAAATAAAGCATTATGGTATAAATGGCATAAATGACATGCCACTT
GAGACAGACTCAAAACTGGCTTTATTTGCTGATGATTGTTACCTTTACCA
AGTTATCTCATCCAGTCCATCTGTTGATATTTACAAGGACTTTGGAAAAT
TGTGAAACCGAGTTAAGATTTaggattttgttttttatctctttttctaa
tttttttctatatTCCCATATCATCTTGTATGAAAATAAAAGGGTgaatt
ttagaaaaagtatATGATTTTTCTGCAATTCACCCAAAAGTTTTGTATAC
AGCATAGTtaattttttactcttttttctagttgaagaagaaaaagaata
aaGTCAAATTGAATAGTATAGGTTATGAAACGCTTTATTGCCAACAACTT
GTGGGATGGTCATCTTCAGATCATGGATATAAATTATACACTTTTTGCAG
GTTTGTCTGTAGGTTTTTCTGGGTGTGTGTTTAGCTTTCAACTCAAGTGA
CGTTTCAATGTCGTACTGTATATACTCATATATGATATACTGCAGTAATC
TTTTAGCTTACATTCTCAAATCTGCCTTTATTTCTATTCTGTATCTggtg
ttatttaaaaaatggagGTTGTCTCAAGGAATCTTTTAGATAAGTACCTA
AATCTAaagtttttgagtattttttcatcaagataCCCTCTTCGATTCCA
ATaacctggagatccatgctatgatttcttcttttatatactGATGATGA
AATGAATAGTATGGTTTGGGCTATGAGTTTCAATTTCCCATCTCTAAACA
GTTGAAAACTCAGTTATTCTCACTGGTCATACTTCCAAAAAAACGCAACt
ttcttaaattgttttaattttagcaaGTGAGGACaacgctaaattcgaat
ttcctacTGTAAATTCTTCGAGCCAGAAATCTCCCTTTCAGCCCTGAACC
TTTACACATCAGTTTATAAAAATACaagacgggtctcctgtctacgtTGC
GTTTCCACATGACGAtttttcattcttcaaaaatttcTGATTGATTCATC
TGGTCAATTTATAAAATGTATGAGTGATAAAATGTACAAAGCGATCTAAG
TTTTGGGGCTAAATTTGATATCTGTAAGagcatagtgcggaaaggggtct
gatcccccttcttaaatgatccccccttcttggcatcctcCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045678-exon-scaffold_100-1491911889:476421..478965 | TCONS_00045678-exon-scaffold_100-1491911889:476421..478965 | Clytia hemisphaerica | exon |
| TCONS_00045678-exon-scaffold_100-1510915933:476421..478965 | TCONS_00045678-exon-scaffold_100-1510915933:476421..478965 | Clytia hemisphaerica | exon |
| TCONS_00045678-exon-scaffold_100-1575043694:476421..478965 | TCONS_00045678-exon-scaffold_100-1575043694:476421..478965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:476421..478965 + |
Blast
The following BLAST results are available for this feature:
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