TCONS_00045677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045677
Unique NameTCONS_00045677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045677 ID=TCONS_00045677|Name=TCONS_00045677|organism=Clytia hemisphaerica|type=transcript|length=381bp
CGAAAGCGTGGGGACAGGCAGCGAGGTCTCTTTGGAAAGTGCATGGCTTG
GTGATAGATCTACAGTTGTTATTTTTGAGATATCAACTCAAAATAATCAC
TCTTTTGACAAGAATGTAATGGATATAATGAAAAGATGGAATTCATATCC
CTTGGAATTTGCAAGACTGTGAGAAATGTGGGCAGTGTTAGCTGAGCAAA
CTGGAATATTTTTAAAGAGGAAAGACCAGATCACAAGACCTTATTGTACG
AGAACCCTGACGTTTAAACACGGTTGAAAAAAAGGACTTTGGAATCATCA
TCAACAAACATGTTATAAccagttttgaaaatttgaataccAAAATAAGG
AAGTACTTCAAACAAAACACAGTGAGTAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_100:441526..453182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045677 ID=TCONS_00045677|Name=TCONS_00045677|organism=Clytia hemisphaerica|type=transcript|length=11657bp|location=Sequence derived from alignment at scaffold_100:441526..453182+ (Clytia hemisphaerica)
CGAAAGCGTGGGGACAGGCAGCGAGGTCTCTTTGGAAAGTGCATGGCTTG
GTGATAGATCTACAGTTGTTATTTTTGAGATATCAACTCAAAATAATCAC
TCTTTTGACAAGAATGTAATGGATATAATGAAAAGATGGAATTCATATCC
CTTGGAATTTGCAAGACTGTGAGAAATGTGGGCAGTGTTAGCTGAGCAAA
CTGGAATATTTTTAAAGAGGAAAGACCAGGTAAGCATTTGTAAAAGATTT
CATcctttcttcagtttttttcaTGAAGTTATTGAGATTTGTATTTGACG
GAAAAATggagaattttcattttatcgCAGTGGTTTTCCTTTGATTTCCC
AACAGAAAAAAGGAACCTTAGAGTCCAACACACAAAGCCATCTTGTATTT
ATATTTCATTTCTCATGTGTGtagtattatttattattatttatctggcg
agacattttttagggcgcaaattatggcgtgggcgtttggctgcgggcgt
actacggtaaatattctaaaggtggactcactcccaaggataaaaagtga
taaaaaaacagggcttttcttaataaataaaatacgctagtgcaagaagt
gtaaccaagcctttgtaaacattcattgtgagaactttaatggctgcttg
attttgaaacttgctgctgctgtataaatttttatcatattttctggtct
tttgtagagtgtttaaagaggtttaatatttgtttactactaagtatttt
atgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGTACAGATAatacagcagatttcaaattaacctattttcatcGCCGCAG
ATCGccgtacaaaggacatttagatccagccccaccgtacaccactgcac
aatgtacagcggtccctcgttaatgatgacagttttttatccgatgaagt
ttgattgGTGAATCGATGAGTTTGATTAGTAAAagttccagcttttcctc
cccgatgggatgatagatattggctcgctctttaagctttagcgtgggtg
tctgctaataagccttcggaatgtaaaaagaataggcaacaaggtaataa
atcaaaataattgagcttcaatcaaacttcaccgatcttgatacaccttt
tgctaattaggattttcattttgaaccaTGGTACGTTGtctgtataagat
tcccatttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aaatgcataatgctgcaggagtcacgtatcacgcgtcttcgtcgttgatg
ttcaagtattatgcgaaattttcgactttaagtcgtcttgtatatttgtt
cttttctttaacagattctgtttaaaagattttcttttgttttgaaaaga
attcgaagtggctcggaaaacacgagttaaaaaacacgagttaaaaaaca
cgagttacaaaaaacacgagttacaaaaaacacgagttacgttaaatgtg
acgtcatcaatggaaaattatgacgtcacaagtagataatttaactcgtc
aatttatggtgcaccttaaactgacgagttaattaactcgtcaatttatg
gtgcaccttaaactgacgagttaattaactcgtcaatttatggtgcaNNN
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caagttggtcaaaaattctaaaatggtggttaaattattttttgtgccta
tttttagtttaaaactattggaatggtaattttctcTCATAGTATTCTAT
AGTCTTTAACTGAGACAGAAGTTGACAAAAAGTATTTAGGCTGGCTCAAA
TGCTAAGGGGAAATGCAAAAAATAGAACTTAAACAAAGAGGTTACGATTC
CTGAAAATAATTCTATTCATTGTCACTTTTAATAAATCTTTTAATTCATT
TAATAACCGTTTTCCTTTTTATGTCgtcatttaaaaatattcttttttag
caaaacattttaaaactttttcgtacaattatttttcaattgtaCTCGTA
ATGAACCTATTTTGCCTActaataattttcaattcaataatatattgaat
gtcagaagcagccggcggaaagattttttagaaatatgtgttcttatctt
ctaggagaccacatgTTATGACCTTCAATTAtcttatacaaatgatgtgt
tctgatttctaggaaaccttaaTCGCACTAtgtgtctccctaaacttatt
actactttatggttggatgtgttctaaaatctaggaataACATTTTGCCA
TGatatacttgtaagatatttgctTTTTTCcacaaaagatgtgttctgaa
actttctagggttactaggcaacaataTCACgtcaattttctcttgatta
tacccctgtctccttaaaagatgtgttctgaagctttctagggttaccta
gacaacaagaacacattTGATCacttatacccctgtctcgtcagaacaca
tcattatttctagctgattaattttcaagATCTTATCAGAACAGATCGAA
ATTTGTAGATGCAACATACCCTGGGGGGGggagggtactaggtttgcgag
gtgacaggtatgtccgagccgaaaatcgaaaatcgaccctttgagagaca
caattttggtgattttgggaccctttgagagaNNNNNNNNNNNNNNNNNN
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NNNNNNNNNccattgatgacgtcacatttaacgtaactcgtgttttttgt
aactcgtgttttttaactcgtgttttttaactcgtgttttttaactcgtg
ttttccgagcctcgaattcgaatgtctcaaatcagaaaaggtcgttaatt
acattcgaaaacataaaacaaaagaaaagagagaaaaaaaagaaaaagtc
taatctatcaatcaaaacaaacttatcgaacaactcaaagtctttctaaa
acggcgcgaatctgatttaacacatttgtagagcaagaagcaaaagtcat
cttttaaaagaacaaaaacattgcttgcgaaaacgaaagtgacacacaaa
aaacacacatacagactacggctattaatatatagatttagagagacaat
ttcaaagtgaaagtttaaaaaactcTCTTGCCATACTCTTGAATTAAAAA
ACCAATTCTACACATGTCACAGTTGGCTTTCTGGTTCAAAAGAAtgcaca
ttcttcaaaaagaccAGAGTTCAAACCGGGACAAAGTATGATATAAAGGG
CCTATaaagatgttttgaaaagttttgaaagtgatagggagtcactattg
taaacagaaagttttaaagagcatctgaataagaattcttcaaaatgaaa
aataaaatttggggAGAAGGTTGATTTTGACCCATCCAGCTCCAAACTTC
CTGTATTgaaaatagtatcttggggtctcaaagttagtctcgTCAAGGAA
TTATAAGAGACAATGGATAAATGACTCATCAAACGGTGGAGAACgaccat
tgtattttctttatttcagaaaacaattaaTGTTCTAGCCATGTCcataa
taactaattaccgaaaggtaaattgcctttaatcaagagtttttgattta
attcttataaagtagatgcttataagaaaaataaatatgctcatattttt
cgccatcctttgtttactttgtaagaactaattaccgaaaggtaaattgt
tttcaatcaaaagtaattagatacccgagagtattaCACGTTAAAAACTA
TTGAGTGACTTGCAAAAGttctttcccgcgttttattaaatttggtcACG
CGGTTAATATATTTCGGAGGTAATCTCCTCAGTATTGCACTCATATGCGA
CAATTGGCCTACCGATTTcgagaaaatgagatttttcacCGTATACAAAA
CTGGTGGGACCGCCTTCAGGGCGGTCGATTATTCTTAATGACATCATTGC
ATAAATTGACTAATTTTATGATCATAAAAGTAATAAATGATTCATTACTA
TTATGGGAATTTACTTTTATTAATGGTGAATACTGTTTAACTTCGAAATC
CAATGTGTAAGCGATGCTAAATTTTTGGATGCTATTATGTAGATAATGAC
TACTACAACAAATCTCTATGGACTTTGTAATTATTCTGCCATAATTAGCA
TGATGCATACTTTATAAGagagttttgatttaaaaaaatgatagatttag
atacaaaaagtttgatactaaaTATCTGACGAAGGAATTAATATTTCGCA
ATTCTGTAAACGCAGTTTTTTGCTTGTTTCTAAAAGAAACCTTCAGCCAA
AATATCGACATTAAACTAAAACACTGATTTTtaactatggtcagagccct
taaggccggtctccactttcgcacgaaatgagcaaaaactttttaacgtt
tttgtaatattattggtcggttgaaaaatggaGCAATTccccattggtca
aaattgacgtgtaacgattgaaaaaagttgaacttccatcaacttttgtt
ttgttcgcgcgaaacttttttatgacgtaattttttcttcaggcaaaaaa
ggttgagAAAAAAGCTGTCGCctatcacaggaaaaaaattttgatttcca
aggctggaaatttcaagatttcttagttggaaaatagataagatccaatg
gaaaatccaacctggaaaCTTGGGACACTGCTCTCCAAGgatggaaattt
tgcattttccatggcttggaattttcaaaaatccaggttgaaaaaagcca
caATCCAAAGTAAATTAATCCAGGTTGaataaagccaaaatccaagctaa
aaaaggttggaattttcaaaaatccaggttgaaaaaagccaaaatccaaa
aagtggtgacagagatgtggaaaaatagagatcttaaacaaggtttttgt
ttttgtgaacagtcactcactagcctaggctcgatggctcccggtcaatc
tctcgttattgttcgcacagatacgtggttgatcttagatcactcacaca
gttcagcagggcaccatttgaaactatgacacaagtaccctatgtgcttt
actgagcgaactcactgcgattgaccaaGGCCTCTCCGAAGGGACGCTTC
Acttgacggaaacttacagcttgactgctcacattatagcctaatatcta
ggttagctatacatcacGACAGTTCTGCACGAAagatcgcttgtggtttt
ctcaaaggacatgcgtagaaaatggtacaaaaacgtaatttccacatcaa
ttttttacgttttccaaactgtttggagaaacacacaTTTCCAACGCAAA
AAGACTAGTTTTTCAATCCGAAGTCTTAATCTTAAACAAAATCTTATTTC
CAACATCGATTTTTGACGCTTTTTTCAactcccaaactgtttggaaaaat
gaaaatttcccacccaaaaagtcatctTTTCCAACCAGcattggaaaatt
gtcatttctacattgttttttttttcacttgatttttcaagggcattggt
ttattctacaaaacctattggtaatttacgttttccaaatcagcctaagg
taatcgctcaaatttccaacattcaattataaaaccaaaatttccaaccc
aaaaatattgaatttccacccTTGGAAATCGAAAGTTTTTTCCTGTGTAT
GGTATGCCAGATGCCAGGGATATGCTAACGCACCAAAAAGGGGTTAAAAA
ATAAAAGCAGTGGTTGCTTTGACAACGAGAAGCATTGAAGTGAAAATTCC
ATGGTGTATTTTATACTTTCGTATTTAGTGAAGTGATTAAAATAGAATTA
CTTTTCTaccgtagctgccaattgccgCACGAGCATTTTTtcgtccgttt
taccaccctaaaaccgtcctagTATTCTTTTCtccctaaagacaatagaa
gaAAGTGTAAAAataggattggatcgagtttagggtggtaaattaaataa
taaagtggcacacgctagtctgattcgcagacctatacttcctataagaa
acttttttcgctagaggatgagcagaagcctagccacacgcctgaccgcg
cgactgcGTGTGTGTTAAATGGTGTATTAAATACCTGTCACGATGATTTT
TTCCACTTTTCAATTTATGATGACGGCTATTGTACTTCagattttgttgt
tgaaaagGTTGCAGTGACCACAGCGGTGACCACAGCGCATTGCCTAAAAc
taaaagattttctaaaatgaaTCCATTTCTGTTCTTACGTCTGTCTCGAt
ataataccgagtttatgtatcggaggatatcgagggcgacggtaagtgag
atcgatacaaaacaaagttgatagttgatgtacggctctatatcacCTTT
ACTCAcataaacagacgacggtatttttaCCGTcatcgagcaaagtggac
ggtgattttggagacgtGTCAACTTTTCTTTATACCGTGCCCCTCacttt
atctcgaatacataaactcgttaATCTGCGAGCAGAGagagacaaaaaaa
atttcaatctctTCCCTTTTATTATAATTCCACTCcttattatcttttca
atgagtACAGAGAAGCTACAACCTTTTTTGGTTAGGCTGCAGATTGTATC
GAGACATACTCCTAACGTTTTTGGCAAATAAACTTTCAAAGCAAGAAAAA
ATGGTCTGTGTTCATGAGATCTTTCAGTAGTACATACTTTCGGAATTTAG
TAAATtgtaacacccccttctcacagacccggtaggatttttctagccag
tggggataaaaataactaactgaatctcaatggggattgatattcccata
tttccccatatttcttatggctggggatttcaattctttcgttttcaagt
cagaaaattcagtagggatgaaaaaaaatattgaatagtaaatattttaa
tgataaAAAGAATAACCAAAgcttcatgtttttgatttttattattAAAT
TCATCGCCCAAGTAAACATTTtttagtaaatattttgcagtgaggattgg
tttatttgattattttcaatggggacaaaaacTGGAGGAGGAATTTCCAC
TAGGGACattattttggccaaatttttccAAAGAGGTCCCAGTGgttctg
tgagaaaggggtgtccAAATTCCTTGCTTTGTAATCGCCTTAACATGCAG
AGAATTTGGCACTTGAGaaaggtacacgcttttttataagaatacacttt
ataagaatgtccatgatgaaaatggccaaaaaattaagaatatgctaaga
gtatcatcatcatggaattttgctactcatgctaagaatgccatttttag
agcattttcaattataaattatcaattacccccaagtaaggctcactcct
ttcacataaaaatgccattttatgcttgagacgtatttACTAAATGtaaa
atctagtctgaattaggatcctaacctaagaatgctgtaagaatttttta
ggatgattttcccaaaaaagttaagaatatccatgatgatatggatttac
accattcttataaaaaaaagcgtgtagcatTTCGGGGTCATCATATGAAT
AGAGAAATCAGTTTATCGGGCTACTTTTCCCAGCCTTCGAAAGTATTCCT
TGCTAACCCAGACGGCACACAGCGTCCAAACAAcatccatgtgacattca
taatgtcccaataacgttatttgaacgttaaaacaacgttgtgtgccaac
tgggaaggtttattattttataataaACAACATACCTTTTAGGATATGAA
AATATGTCTTCACTTCTCAATGCAAAATAGTGACATCCTCACCCCAGACA
AGCTAACTTTGAACTAGGCGTTTTTCAATTTCACATAAAAAAATGATATT
CTTAAAGACATTTAGAACAGTTGAGGAAAGAACAATAAAGAAGCAACACG
AACAATTAAAAAGTTAGGCTTGTGTCAGTCTAAAACGCCAAATAAGGCCA
ATGTATTGTTGGAAAAGATTTCACTAGTGAACTGCGATTTACTGGTATTT
TTAGAAAGACAAGATTGCtgacaagcaaaaaatcaaattcgcCTTGTTTA
TATGTAAGTTTAACAAAGCAACGATCCtaattactttcattttgattcat
tttagATCACAAGACCTTATTGTACGAGAACCCTGACGTTTAAACACGGT
TGAAAAAAAGGACTTTGGAATCATCATCAACAAACATGTTATAAccagtt
ttgaaaatttgaataccAAAATAAGGAAGTACTTCAAACAAAACACAGTG
AGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029200XLOC_029200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045677-exon-scaffold_100-1491911889:441526..441754TCONS_00045677-exon-scaffold_100-1491911889:441526..441754Clytia hemisphaericaexon
TCONS_00045677-exon-scaffold_100-1510915933:441526..441754TCONS_00045677-exon-scaffold_100-1510915933:441526..441754Clytia hemisphaericaexon
TCONS_00045677-exon-scaffold_100-1575043694:441526..441754TCONS_00045677-exon-scaffold_100-1575043694:441526..441754Clytia hemisphaericaexon
TCONS_00045677-exon-scaffold_100-1491911889:453031..453182TCONS_00045677-exon-scaffold_100-1491911889:453031..453182Clytia hemisphaericaexon
TCONS_00045677-exon-scaffold_100-1510915933:453031..453182TCONS_00045677-exon-scaffold_100-1510915933:453031..453182Clytia hemisphaericaexon
TCONS_00045677-exon-scaffold_100-1575043694:453031..453182TCONS_00045677-exon-scaffold_100-1575043694:453031..453182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:441526..453182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.86924	6.15459	4.76392	7.19969	3.11364	5.35967	4.59745	2.98615	2.83741	7.06963	0	0	0	0	0	0	0	0	0	0	4.86732	7.10735	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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