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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=transcript|length=1029bp
CTATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGG
AAGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAA
TATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATG
TAGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGAT
GGTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAAT
GTTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGA
TAAAAGGAGACCAGCTGAAGATATCAAACTAGAAGAGGTATTTGGATTTC
TATTGAAtgatatttcaaaacaaagtttatttGGGAAAACATTCTCTTTA
AGTTCGTCATTCAAACACTGGTATATTATACGAGAATTCAACAATGATTG
TTATTTTAATTTGGACTCTAAGCTTCAAAAGCCGCTGGAGATAGGTGATG
ATAAGCTGCTTATAGAATATTTAAATACACGGCTCATACAGAAAGAATGT
CAGTTATTACTAGTCGTTAAAACTGGACGGAGCGGTGAAGATGTTTATAT
CAACAAAGATGCTGGTTGATGCGTTTCACGAGCACACAAGTAGAAGGGAC
GGTGTTTATTTAGCCTGGGGAACTTGAGATCGAGGCTATTATTAACAAGA
GATAGAAGAGATAGATCTGTTATTCAAGGATTTACCGAGCGAGGAAAAAC
GTAAAATTacaatttgaattttcatgGGATCccagaatgaaaaatgaaac
ttaatcAGGACATGGCTATCATcgaaagtatttaaaaatttgaatttaga
aCTGAGGAAGTCAATACCTTTGGGATATAATCACTGTTGACAACTTTGAT
TTTAATTGTCAAATGCTTTTTATGATAGctatatagtagggggaaatttg
ttcgtttttttgaggtcgctcgaattttttagtcaaagcacttgttatac
atttttggaaagctaaggggtaggggaat Run BLAST on NCBI protein sequence of TCONS_00045658-protein >TCONS_00045658-protein ID=TCONS_00045658-protein|Name=TCONS_00045658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
YFRVDLKNNEIKIQIMEEKVNKTELYHEKQRLQYCAVHAINNLFQNADAC
SKATLDEICYNLNPSRWLNPHRSMLGLGNYDINVITMFLQSREHEVVWFD
KRRPAEDIKLEEVFGFLLNDISKQSLFGKTFSLSSSFKHWYIIREFNNDC
YFNLDSKLQKPLEIGDDKLLIEYLNTRLIQKECQLLLVVKTGRSGEDVYI
NKDAG Run BLAST on NCBI transcript from alignment at scaffold_100:239926..242476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=transcript|length=2551bp|location=Sequence derived from alignment at scaffold_100:239926..242476+ (Clytia hemisphaerica)
CTATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGG
AAGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAA
TATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATG
TAGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGAT
GGTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAAT
GTTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGA
TAAAAGGAGGTAAGGATTAAGTCTTTTGGTTGATTTTAATATTTGGGTCT
TAGAAAATAATGTTGGAGGGTTACAATATTCTTATTCATTTTCGTGACtc
ttctaaagtctattcacgattagtgtgcactcttttttcatttacctata
acttttggaggaattcctcaatctttataaatttggtatagttgaaaaga
tattagtgagtggaaaaatttggaataaaaaatctataaaaaaattataa
aaatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtagagaagt
gctataactttcattttcacttttcaatCTTAAAGATTCAGCTTTAAAAG
TTGGTAGTTCTTTCTTTTCTcgcccagccggcacacaacgttgtttcaac
gttcatctaacgttatatggacgttgtgaacattagataaacgttgaaac
aacgttgtgtgccagctgggcggTGTAATTGATTAaacacccccttttca
cagactcACCGAGACCCCTtaccactggaaaaattggccaaatatcgtcc
ccagtggaaagttATATTCCAAGTTTTATTCCAAGTTTTGTCCCCTCTGA
AAAGAATAAAATGAACCAATTcgcactgcaaaatattatgctatttttcc
cattgccactaaattttctgacttgaataCAATGCAATTAAAGTCATTAG
GTATGGATGTATTAATTCCCATCGAGTTTcaatccgttatttttaccccc
actggctgagaAATCCTAACGGGCCTGTGAGAAGGGGGCGTGATTGAAGG
GTTCGTAAGAAGTTTACTTTGTTTATAAAAGTAACACTTGAAGACTGAAG
GGATTTAAATTAGCTTGgtaaatggtttcaaaacgaggctgttgttgcac
tcaaaataatttatgaaaggCTCAGACAGTGTATATTGACATTTAATGGT
ccctaaattgaaaaattttgatccTTAAAAAGGGTTAATTTCGGACGTTA
GGAACCTTAGACcccttttttgcttctttttatgCATTTagaccagacgt
ccgcgctcgataggatcgatcatcggaacggctcgatgacggatcaatat
gtgatcgatggattacttaacgatccggataggagatcgatggaagattc
agccattaaaaagtcttgagtatcgatccttcgttgatccattatcgagc
tagtatttcaatcgagtatatcgattcgtcatcgatcgttaatcgactta
ttatcgatcgtaaatcaagtatgagtcgatagggtcgataagatcgataa
aagatcgatgatagatcgataaataatcgataactaatcataagcttaaa
gaaatcttgagtatcgatcctctattgatctcctatccggatcgttaagt
aatccatcgatcacatatcgatccgtcatcaagccgttccgatgatcgat
cctatcgagcgcggacgtctggtttAGAGCCCCATAATCACTTTTGATCA
TAAAATAATTCTGTTCTATTTTTCACAATAGACCAGCTGAAGATATCAAA
CTAGAAGAGGTATTTGGATTTCTATTGAAtgatatttcaaaacaaagttt
atttGGGAAAACATTCTCTTTAAGTTCGTCATTCAAACACTGGTATATTA
TACGAGAATTCAACAATGATTGTTATTTTAATTTGGACTCTAAGCTTCAA
AAGCCGCTGGAGATAGGTGATGATAAGCTGCTTATAGAATATTTAAATAC
ACGGCTCATACAGAAAGAATGTCAGTTATTACTAGTCGTTAAAACTGGAC
GGAGCGGTGAAGATGTTTATATCAACAAAGATGCTGGTTGATGCGTTTCA
CGAGCACACAAGTAGAAGGGACGGTGTTTATTTAGCCTGGGGAACTTGAG
ATCGAGGCTATTATTAACAAGAGATAGAAGAGATAGATCTGTTATTCAAG
GATTTACCGAGCGAGGAAAAACGTAAAATTacaatttgaattttcatgGG
ATCccagaatgaaaaatgaaacttaatcAGGACATGGCTATCATcgaaag
tatttaaaaatttgaatttagaaCTGAGGAAGTCAATACCTTTGGGATAT
AATCACTGTTGACAACTTTGATTTTAATTGTCAAATGCTTTTTATGATAG
ctatatagtagggggaaatttgttcgtttttttgaggtcgctcgaatttt
ttagtcaaagcacttgttatacatttttggaaagctaaggggtaggggaa
t Coding sequence (CDS) from alignment at scaffold_100:239926..242476+ >TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_100:239926..242476+ (Clytia hemisphaerica)
TATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGGA
AGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAAT
ATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATGT
AGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGATG
GTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAATG
TTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGAT
AAAAGGAGACCAGCTGAAGATATCAAACTAGAAGAGGTATTTGGATTTCT
ATTGAAtgatatttcaaaacaaagtttatttGGGAAAACATTCTCTTTAA
GTTCGTCATTCAAACACTGGTATATTATACGAGAATTCAACAATGATTGT
TATTTTAATTTGGACTCTAAGCTTCAAAAGCCGCTGGAGATAGGTGATGA
TAAGCTGCTTATAGAATATTTAAATACACGGCTCATACAGAAAGAATGTC
AGTTATTACTAGTCGTTAAAACTGGACGGAGCGGTGAAGATGTTTATATC
AACAAAGATGCTGGTTGATATTTCAGAGTAGAcctaaaaaataatgaaat
aaaaatacaaatcaTGGAAGAAAAAGTGAATAAAACAGAATTATATCATG
AGAAACAAAGGCTACAATATTGTGCAGTTCACGCTATCAACAATTTATTC
CAAAACGCTGATGCATGTAGTAAAGCAACACTGGATGAAATCTGTTATAA
TTTGAACCCGAGTAGATGGTTAAATCCTCACCGAAGCATGCTTGGATTGG
GAAATTATGATATTAATGTTATTACAATGTTTTTGCAATCTCGAGAACAT
GAAGTTGTATGGTTTGATAAAAGGAGACCAGCTGAAGATATCAAACTAGA
AGAGGTATTTGGATTTCTATTGAAtgatatttcaaaacaaagtttatttG
GGAAAACATTCTCTTTAAGTTCGTCATTCAAACACTGGTATATTATACGA
GAATTCAACAATGATTGTTATTTTAATTTGGACTCTAAGCTTCAAAAGCC
GCTGGAGATAGGTGATGATAAGCTGCTTATAGAATATTTAAATACACGGC
TCATACAGAAAGAATGTCAGTTATTACTAGTCGTTAAAACTGGACGGAGC
GGTGAAGATGTTTATATCAACAAAGATGCTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045658-exon-scaffold_100-1491911889:239926..240234 | TCONS_00045658-exon-scaffold_100-1491911889:239926..240234 | Clytia hemisphaerica | exon |
| TCONS_00045658-exon-scaffold_100-1510915933:239926..240234 | TCONS_00045658-exon-scaffold_100-1510915933:239926..240234 | Clytia hemisphaerica | exon |
| TCONS_00045658-exon-scaffold_100-1575043694:239926..240234 | TCONS_00045658-exon-scaffold_100-1575043694:239926..240234 | Clytia hemisphaerica | exon |
| TCONS_00045658-exon-scaffold_100-1491911889:241757..242476 | TCONS_00045658-exon-scaffold_100-1491911889:241757..242476 | Clytia hemisphaerica | exon |
| TCONS_00045658-exon-scaffold_100-1510915933:241757..242476 | TCONS_00045658-exon-scaffold_100-1510915933:241757..242476 | Clytia hemisphaerica | exon |
| TCONS_00045658-exon-scaffold_100-1575043694:241757..242476 | TCONS_00045658-exon-scaffold_100-1575043694:241757..242476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:239926..242476 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006155 | Josephin |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0004843 |
thiol-dependent ubiquitin-specific protease activity |
Blast
BLAST of TCONS_00045658 vs. Swiss-Prot (Human)
Match: JOS2 (Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.662e-42 Identity = 76/176 (43.18%), Postives = 103/176 (58.52%), Query Frame = 2
Query: 41 QIMEEKVNKTELYHEKQRLQYCAVHAINNLFQNADACSKATLDEICYNLNPSRWLNPHRSMLGLGNYDINVITMFLQSREHEVVWFDKRRPAEDIKLEEVFGFLLNDISKQSLFGKTFSLSSSFKHWYIIREFNNDCYFNLDSKLQKPLEIGDDKLLIEYLNTRLIQKECQLLLVV 568
Q + + +YHE+QRL+ CAVHA+NN+ Q S+ DEIC L P LNPHRS+LG GNYD+NVI LQ VW+D+RRP + L +V G +LN S SL SL +HW +R+ + Y+NLDSKL+ P +GD+ + +L L Q C++LLVV
Sbjct: 3 QAPGAQPSPPTVYHERQRLELCAVHALNNVLQQ-QLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSL--GLLSLPLRRRHWVALRQVDG-VYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVV 174
The following BLAST results are available for this feature:
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