TCONS_00045658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045658
Unique NameTCONS_00045658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=transcript|length=1029bp
CTATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGG
AAGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAA
TATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATG
TAGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGAT
GGTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAAT
GTTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGA
TAAAAGGAGACCAGCTGAAGATATCAAACTAGAAGAGGTATTTGGATTTC
TATTGAAtgatatttcaaaacaaagtttatttGGGAAAACATTCTCTTTA
AGTTCGTCATTCAAACACTGGTATATTATACGAGAATTCAACAATGATTG
TTATTTTAATTTGGACTCTAAGCTTCAAAAGCCGCTGGAGATAGGTGATG
ATAAGCTGCTTATAGAATATTTAAATACACGGCTCATACAGAAAGAATGT
CAGTTATTACTAGTCGTTAAAACTGGACGGAGCGGTGAAGATGTTTATAT
CAACAAAGATGCTGGTTGATGCGTTTCACGAGCACACAAGTAGAAGGGAC
GGTGTTTATTTAGCCTGGGGAACTTGAGATCGAGGCTATTATTAACAAGA
GATAGAAGAGATAGATCTGTTATTCAAGGATTTACCGAGCGAGGAAAAAC
GTAAAATTacaatttgaattttcatgGGATCccagaatgaaaaatgaaac
ttaatcAGGACATGGCTATCATcgaaagtatttaaaaatttgaatttaga
aCTGAGGAAGTCAATACCTTTGGGATATAATCACTGTTGACAACTTTGAT
TTTAATTGTCAAATGCTTTTTATGATAGctatatagtagggggaaatttg
ttcgtttttttgaggtcgctcgaattttttagtcaaagcacttgttatac
atttttggaaagctaaggggtaggggaat
Run BLAST on NCBI

protein sequence of TCONS_00045658-protein

>TCONS_00045658-protein ID=TCONS_00045658-protein|Name=TCONS_00045658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
YFRVDLKNNEIKIQIMEEKVNKTELYHEKQRLQYCAVHAINNLFQNADAC
SKATLDEICYNLNPSRWLNPHRSMLGLGNYDINVITMFLQSREHEVVWFD
KRRPAEDIKLEEVFGFLLNDISKQSLFGKTFSLSSSFKHWYIIREFNNDC
YFNLDSKLQKPLEIGDDKLLIEYLNTRLIQKECQLLLVVKTGRSGEDVYI
NKDAG
Run BLAST on NCBI

transcript from alignment at scaffold_100:239926..242476+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=transcript|length=2551bp|location=Sequence derived from alignment at scaffold_100:239926..242476+ (Clytia hemisphaerica)
CTATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGG
AAGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAA
TATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATG
TAGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGAT
GGTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAAT
GTTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGA
TAAAAGGAGGTAAGGATTAAGTCTTTTGGTTGATTTTAATATTTGGGTCT
TAGAAAATAATGTTGGAGGGTTACAATATTCTTATTCATTTTCGTGACtc
ttctaaagtctattcacgattagtgtgcactcttttttcatttacctata
acttttggaggaattcctcaatctttataaatttggtatagttgaaaaga
tattagtgagtggaaaaatttggaataaaaaatctataaaaaaattataa
aaatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtagagaagt
gctataactttcattttcacttttcaatCTTAAAGATTCAGCTTTAAAAG
TTGGTAGTTCTTTCTTTTCTcgcccagccggcacacaacgttgtttcaac
gttcatctaacgttatatggacgttgtgaacattagataaacgttgaaac
aacgttgtgtgccagctgggcggTGTAATTGATTAaacacccccttttca
cagactcACCGAGACCCCTtaccactggaaaaattggccaaatatcgtcc
ccagtggaaagttATATTCCAAGTTTTATTCCAAGTTTTGTCCCCTCTGA
AAAGAATAAAATGAACCAATTcgcactgcaaaatattatgctatttttcc
cattgccactaaattttctgacttgaataCAATGCAATTAAAGTCATTAG
GTATGGATGTATTAATTCCCATCGAGTTTcaatccgttatttttaccccc
actggctgagaAATCCTAACGGGCCTGTGAGAAGGGGGCGTGATTGAAGG
GTTCGTAAGAAGTTTACTTTGTTTATAAAAGTAACACTTGAAGACTGAAG
GGATTTAAATTAGCTTGgtaaatggtttcaaaacgaggctgttgttgcac
tcaaaataatttatgaaaggCTCAGACAGTGTATATTGACATTTAATGGT
ccctaaattgaaaaattttgatccTTAAAAAGGGTTAATTTCGGACGTTA
GGAACCTTAGACcccttttttgcttctttttatgCATTTagaccagacgt
ccgcgctcgataggatcgatcatcggaacggctcgatgacggatcaatat
gtgatcgatggattacttaacgatccggataggagatcgatggaagattc
agccattaaaaagtcttgagtatcgatccttcgttgatccattatcgagc
tagtatttcaatcgagtatatcgattcgtcatcgatcgttaatcgactta
ttatcgatcgtaaatcaagtatgagtcgatagggtcgataagatcgataa
aagatcgatgatagatcgataaataatcgataactaatcataagcttaaa
gaaatcttgagtatcgatcctctattgatctcctatccggatcgttaagt
aatccatcgatcacatatcgatccgtcatcaagccgttccgatgatcgat
cctatcgagcgcggacgtctggtttAGAGCCCCATAATCACTTTTGATCA
TAAAATAATTCTGTTCTATTTTTCACAATAGACCAGCTGAAGATATCAAA
CTAGAAGAGGTATTTGGATTTCTATTGAAtgatatttcaaaacaaagttt
atttGGGAAAACATTCTCTTTAAGTTCGTCATTCAAACACTGGTATATTA
TACGAGAATTCAACAATGATTGTTATTTTAATTTGGACTCTAAGCTTCAA
AAGCCGCTGGAGATAGGTGATGATAAGCTGCTTATAGAATATTTAAATAC
ACGGCTCATACAGAAAGAATGTCAGTTATTACTAGTCGTTAAAACTGGAC
GGAGCGGTGAAGATGTTTATATCAACAAAGATGCTGGTTGATGCGTTTCA
CGAGCACACAAGTAGAAGGGACGGTGTTTATTTAGCCTGGGGAACTTGAG
ATCGAGGCTATTATTAACAAGAGATAGAAGAGATAGATCTGTTATTCAAG
GATTTACCGAGCGAGGAAAAACGTAAAATTacaatttgaattttcatgGG
ATCccagaatgaaaaatgaaacttaatcAGGACATGGCTATCATcgaaag
tatttaaaaatttgaatttagaaCTGAGGAAGTCAATACCTTTGGGATAT
AATCACTGTTGACAACTTTGATTTTAATTGTCAAATGCTTTTTATGATAG
ctatatagtagggggaaatttgttcgtttttttgaggtcgctcgaatttt
ttagtcaaagcacttgttatacatttttggaaagctaaggggtaggggaa
t

Coding sequence (CDS) from alignment at scaffold_100:239926..242476+

>TCONS_00045658 ID=TCONS_00045658|Name=TCONS_00045658|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_100:239926..242476+ (Clytia hemisphaerica)
TATTTCAGAGTAGAcctaaaaaataatgaaataaaaatacaaatcaTGGA
AGAAAAAGTGAATAAAACAGAATTATATCATGAGAAACAAAGGCTACAAT
ATTGTGCAGTTCACGCTATCAACAATTTATTCCAAAACGCTGATGCATGT
AGTAAAGCAACACTGGATGAAATCTGTTATAATTTGAACCCGAGTAGATG
GTTAAATCCTCACCGAAGCATGCTTGGATTGGGAAATTATGATATTAATG
TTATTACAATGTTTTTGCAATCTCGAGAACATGAAGTTGTATGGTTTGAT
AAAAGGAGACCAGCTGAAGATATCAAACTAGAAGAGGTATTTGGATTTCT
ATTGAAtgatatttcaaaacaaagtttatttGGGAAAACATTCTCTTTAA
GTTCGTCATTCAAACACTGGTATATTATACGAGAATTCAACAATGATTGT
TATTTTAATTTGGACTCTAAGCTTCAAAAGCCGCTGGAGATAGGTGATGA
TAAGCTGCTTATAGAATATTTAAATACACGGCTCATACAGAAAGAATGTC
AGTTATTACTAGTCGTTAAAACTGGACGGAGCGGTGAAGATGTTTATATC
AACAAAGATGCTGGTTGATATTTCAGAGTAGAcctaaaaaataatgaaat
aaaaatacaaatcaTGGAAGAAAAAGTGAATAAAACAGAATTATATCATG
AGAAACAAAGGCTACAATATTGTGCAGTTCACGCTATCAACAATTTATTC
CAAAACGCTGATGCATGTAGTAAAGCAACACTGGATGAAATCTGTTATAA
TTTGAACCCGAGTAGATGGTTAAATCCTCACCGAAGCATGCTTGGATTGG
GAAATTATGATATTAATGTTATTACAATGTTTTTGCAATCTCGAGAACAT
GAAGTTGTATGGTTTGATAAAAGGAGACCAGCTGAAGATATCAAACTAGA
AGAGGTATTTGGATTTCTATTGAAtgatatttcaaaacaaagtttatttG
GGAAAACATTCTCTTTAAGTTCGTCATTCAAACACTGGTATATTATACGA
GAATTCAACAATGATTGTTATTTTAATTTGGACTCTAAGCTTCAAAAGCC
GCTGGAGATAGGTGATGATAAGCTGCTTATAGAATATTTAAATACACGGC
TCATACAGAAAGAATGTCAGTTATTACTAGTCGTTAAAACTGGACGGAGC
GGTGAAGATGTTTATATCAACAAAGATGCTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029193XLOC_029193Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045658-proteinTCONS_00045658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045658-exon-scaffold_100-1491911889:239926..240234TCONS_00045658-exon-scaffold_100-1491911889:239926..240234Clytia hemisphaericaexon
TCONS_00045658-exon-scaffold_100-1510915933:239926..240234TCONS_00045658-exon-scaffold_100-1510915933:239926..240234Clytia hemisphaericaexon
TCONS_00045658-exon-scaffold_100-1575043694:239926..240234TCONS_00045658-exon-scaffold_100-1575043694:239926..240234Clytia hemisphaericaexon
TCONS_00045658-exon-scaffold_100-1491911889:241757..242476TCONS_00045658-exon-scaffold_100-1491911889:241757..242476Clytia hemisphaericaexon
TCONS_00045658-exon-scaffold_100-1510915933:241757..242476TCONS_00045658-exon-scaffold_100-1510915933:241757..242476Clytia hemisphaericaexon
TCONS_00045658-exon-scaffold_100-1575043694:241757..242476TCONS_00045658-exon-scaffold_100-1575043694:241757..242476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:239926..242476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.4328	27.3667	16.8971	14.0425	13.6879	10.4612	10.6162	10.3401	7.89415	9.38386	8.18149	4.1534	5.89562	3.98397	4.76669	6.78267	8.91758	6.90674	5.99162	5.10552	5.60312	6.31483	24.4985	24.7182	6.91437	7.99894	12.7394	9.58052	16.5901	16.4649
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006155Josephin
Vocabulary: Molecular Function
TermDefinition
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0004843 thiol-dependent ubiquitin-specific protease activity
Blast
[Close]
BLAST of TCONS_00045658 vs. Swiss-Prot (Human)
Match: JOS2 (Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.662e-42
Identity = 76/176 (43.18%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:   41 QIMEEKVNKTELYHEKQRLQYCAVHAINNLFQNADACSKATLDEICYNLNPSRWLNPHRSMLGLGNYDINVITMFLQSREHEVVWFDKRRPAEDIKLEEVFGFLLNDISKQSLFGKTFSLSSSFKHWYIIREFNNDCYFNLDSKLQKPLEIGDDKLLIEYLNTRLIQKECQLLLVV 568
            Q    + +   +YHE+QRL+ CAVHA+NN+ Q     S+   DEIC  L P   LNPHRS+LG GNYD+NVI   LQ      VW+D+RRP   + L +V G +LN  S  SL     SL    +HW  +R+ +   Y+NLDSKL+ P  +GD+  +  +L   L Q  C++LLVV
Sbjct:    3 QAPGAQPSPPTVYHERQRLELCAVHALNNVLQQ-QLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSL--GLLSLPLRRRHWVALRQVDG-VYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVV 174
The following BLAST results are available for this feature:
BLAST of TCONS_00045658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JOS23.662e-4243.18Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1[more]
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