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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045657 ID=TCONS_00045657|Name=TCONS_00045657|organism=Clytia hemisphaerica|type=transcript|length=440bp
ATCACGATTGACAGATATACAGATCTGCAGATGTACAGCGGATATTCCAA
ATCGACACGTCGAATAATGGTACAGCTATCAAGTATCCCGGATTAAGAAG
TCAACGCATCGTCATATTGGACGGCATACAATTAGGAAAAGGTGGTATCA
ATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGGATACCGTGAAAG
TGCAGAATAGTGTACAAGAACCACTGGATAAACCGATTATCGAGATCGTT
CTCAGGTAGACATGACCCTTAATTGTCAACTTGACTAAAACACGACAGGA
AAATCATTTATTCAACATCGAAGCGCTAAGAATTATGCACCCGACTGTAT
CCACGGATATTTTATatgcaaatatttttattatacccctatatcagtga
cccggtcagctCCACTTGATAGATAACCCggtgaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_100:230626..233896+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045657 ID=TCONS_00045657|Name=TCONS_00045657|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at scaffold_100:230626..233896+ (Clytia hemisphaerica)
ATCACGATTGACAGATATACAGATCTGCAGATGTACAGCGGGTAGCTATA
CTtaagtttcttatttttcttaccTATTTTGTCACATAGAATTTGTCACA
TAGAATTTGTGCTATTTTACATCTTGTACCTTtaattaaaggaagaaatt
ttggtggaaagaaaatttggcggatttggcggatttgactgaaatccgcc
aaattaagtttccgccatccgccaaattaaattcccgccaaattaaacat
tttgaaaatatgatctcttttaaggtgttttttgctatttttccgCTGTT
TTGACgtcatcttaaggttaaatttttaagcgaccgccaaattaaattcc
cgccaaatttagttttttcgtccatcagTATAGACCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNatttttccttttttttgcaaaagttctaggaatgaaaataaaggg
ataatgataattgaatactatccattgatgatccgcggcactatcgtaaa
gctggAATCACTTCGCGTACACTTCGCttaagaaaatgattgacagattg
aagtttttcatccccgcggcgcgcgccgcgcgggagctcgggcgctaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTAATCCA
CCTAAGGCGGCGGACACGTaaggtattttgatttgatttaagtCAATGAA
TCCAGAATTTCGCCGGTTTAGGGATTGTAAAGATCTTCTAACGCCACATG
ATGGACatttaaaaatgttagaaaaggtTTTTAAACGCTGTTGTGTGCCA
ACCGTTTCATATTTGATCGGTATTAAATGTGGTTTTGCCGGTTCCGGttg
aagattaaaataatttgaatatcttGCTTTTCTTTCAAGATATTCCAAAT
CGACACGTCGAATAATGGTACAGCTATCAAGTATCCCGGATTAAGAAGTC
AACGCATCGTCATATTGGACGGCATACAATTAGGAAAAGGTATTTCGTTC
TCGAATGTTTTCACCTGGTTTTATCGTCATCCTTTATACCATTTTAATAT
GTATCTTTCGTctagtaaaataattttgtcatgcACCCCTATTTTAGGTC
GTTGACTACtaaatgacaaaaatttatcCCAACATAGATAAAGTAAAGTT
ACATCTTCTAATTTACAGGATTTCGACATAACATTTGCGTTCTAGGTGGT
ATCAATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGGATACCGTG
AAAGTGCAGAATAGTGTACAAgtaagtactctcgggtacctaatggctgg
ggccgctaattaattttccaCTTAGGACAATTTTATAGCCCCCCCatccc
gcttattaagttttgagataaCGTTAACTGTAAATTTCTTTATATGTCTA
ATAAATATTCGATGGGTTTGGTTGTGCTTTCTATCTAAAGAGCTAACGTA
ATGAAGCCCTGAATATACCTATTTTTATTCATTCGTTGTCTTTTATAGGA
ACCACTGGATAAACCGATTATCGAGATCGTTCTCAGGTAGACATGACCCT
TAATTGTCAACTTGACTAAAACACGACAGGAAAATCATTTATTCAACATC
GAAGCGCTAAGAATTATGCACCCGACTGTATCCACGGATATTTTATatgc
aaatatttttattatacccctatatcagtgacccggtcagctCCACTTGA
TAGATAACCCggtgaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045657-exon-scaffold_100-1491911889:230626..230666 | TCONS_00045657-exon-scaffold_100-1491911889:230626..230666 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1510915933:230626..230666 | TCONS_00045657-exon-scaffold_100-1510915933:230626..230666 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1575043694:230626..230666 | TCONS_00045657-exon-scaffold_100-1575043694:230626..230666 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1491911889:233065..233164 | TCONS_00045657-exon-scaffold_100-1491911889:233065..233164 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1510915933:233065..233164 | TCONS_00045657-exon-scaffold_100-1510915933:233065..233164 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1575043694:233065..233164 | TCONS_00045657-exon-scaffold_100-1575043694:233065..233164 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1491911889:233371..233446 | TCONS_00045657-exon-scaffold_100-1491911889:233371..233446 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1510915933:233371..233446 | TCONS_00045657-exon-scaffold_100-1510915933:233371..233446 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1575043694:233371..233446 | TCONS_00045657-exon-scaffold_100-1575043694:233371..233446 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1491911889:233674..233896 | TCONS_00045657-exon-scaffold_100-1491911889:233674..233896 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1510915933:233674..233896 | TCONS_00045657-exon-scaffold_100-1510915933:233674..233896 | Clytia hemisphaerica | exon |
| TCONS_00045657-exon-scaffold_100-1575043694:233674..233896 | TCONS_00045657-exon-scaffold_100-1575043694:233674..233896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:230626..233896 + |
Blast
The following BLAST results are available for this feature:
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