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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045655 ID=TCONS_00045655|Name=TCONS_00045655|organism=Clytia hemisphaerica|type=transcript|length=1251bp
TTGTAATCACGAGATCATCAAGTCATCGGATCATAAAGATTGTTCTAAGA
AAAATAGAACAATTTTCTTTACACATACAAAGCACAAGACAAgacaagat
tttttgaaaagatatacaaaggaatcttctgTACACCACTTTGCTACCAT
TATGGATATGAAACACATGACACACGAGAACAACAAAACAGGAATGGATA
TGGGAATGGACATGGATATGCCGATGTATTTCCATGGAGGGACGATGGTA
ACTTTATTCTTCAAAGATTGGATGACGATGAGCCAAAAAGAATTCAATGG
AGCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGTATGAGGGATTGAAAG
TATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATCCAATGTAGTGCACAa
TCTGCAAATTTCACCTCAAACAACAATGGGCCACCAACTTTACAACAACG
ACTCATTGTCCACCTGATCCAGACTGTGTTACACATCATTCAAGTGTTCC
TTGGTTATCTTCTCATGTTGGCTTTCATGACGTACAATTCTTTAGTATGT
GTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTGTTCGCTTGGTG
GACACCGATGGTCCCTGGAGGCGATGGTGAAGATGCTGATTGTTGTAATA
TGTGATCAGAACGTTCTGTAGAATGTGGAAAAGATGAATATTTCTTTACT
TATTAATAGTCAggaagaaacttttttattctgctactggcagtttcatg
ccactttgGTGACAATATCTTCAGGCAACtaaaacacttttttattctgc
tactggcagtttcatgccacctttgtgacaatcttcaggcaattTCATAT
AATTTCTTTTTGGAATATAGTTAAATGTCAAAAGTTTTTTACTCTATTCT
CATGATTCTTTACTTAGTTTTTTAAATGGAAGATAACTTTTTACTCTATT
CTCAtgatttgaaaatctttgcGAATGGTCGGGACTCGCGAAATTTTCAG
ACATTTAAGTAGTTTTTAAAACCAAATGTAATGATGGTTTCGAGTTCTTA
TGGTTGACAAGTATATACTGCAATGAAGGTGAGTCAACAGTGGTTGCAAA
GTCTAAAGGTGATCGAAATCGTTTGTGGAGagcaaataaaagaaataaca
acaaaagaaactCTCCGCCATTTTGAATACCTTAATTCCCTTAATTTTTG
CGCCTTTTGTTTTCGCGCAGCTCGTAAAATAGAACATTCGCGCAttcttt
a Run BLAST on NCBI protein sequence of TCONS_00045655-protein >TCONS_00045655-protein ID=TCONS_00045655-protein|Name=TCONS_00045655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
CNHEIIKSSDHKDCSKKNRTIFFTHTKHKTRQDFLKRYTKESSVHHFATI
MDMKHMTHENNKTGMDMGMDMDMPMYFHGGTMVTLFFKDWMTMSQKEFNG
ACVALFLVSALYEGLKVLRKLIVPGKRIQCSAQSANFTSNNNGPPTLQQR
LIVHLIQTVLHIIQVFLGYLLMLAFMTYNSLVCVSILLGYGFGYLVFAWW
TPMVPGGDGEDADCCNM Run BLAST on NCBI transcript from alignment at scaffold_100:203177..216913+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045655 ID=TCONS_00045655|Name=TCONS_00045655|organism=Clytia hemisphaerica|type=transcript|length=13737bp|location=Sequence derived from alignment at scaffold_100:203177..216913+ (Clytia hemisphaerica)
TTGTAATCACGAGATCATCAAGTCATCGGATCATAAAGATTGTTCTAAGA
AAAATAGAACAATTTTCTTTACACATACAAAGCACAAGACAAgacaagat
tttttgaaaaggtatttttgtttgatatatatttttgaatgtGATATTAA
TTCgcttagaaaaaatatttctcacaGGAGATTTTATCAAATTCGATCAT
TTAGTATCTGTCACCGCTCAAGAGGTTTGCTTGAGAGGATGATCATCTAA
AAACTAATTTTGTGGAATAGAAAAAATCGATTGGGATAGATTCTTTGATG
TGATCAGGCTAGACTTTAGATGCTTCGTTTTTCAGAGGCTCGGTCCTTAG
GTTCATTAGAGAAAACACAAGGAATGGAGTGACCTCCTCCACTGCTTTCA
AATAAACAGCTAAAGAAAAGGGAGCCTTGGGGTTGTCCTCGACTGCAGTC
GCAAacttactttcactttcaatacacaggttgcaaaattaaaatctgAA
GTCAAATCAcgtttttactcgaaattttatgtgcttgttacatgaccttt
atttctgatttgctgaaatttattAACACTATTAAAATTATTatagctgt
aagttgtaaaccAAGTAACATGGGAAAAAAGTCACGTGAACAGTAAATTT
ACTCCATTACAGatatacaaaggaatcttctgTACACCACTTTGCTACCA
TTATGGATATGAAACACATGACACACGAGAACAACAAAACAGGAATGGAT
ATGGGAATGGACATGGATGTAAGTTATCCAAACTTTCAATCCCATTTTAT
GGCCCCCCAGttgtttgcgtgaatgcgtgaaaattgaaaaaaaaatgcct
gaatgcgtgaattgaaaaaatttgcgtgaacgtgaaaattcactttgtGA
ATGCGTGAacctgggctattttgtgcgtgaatactttaatcgtagaaatt
ttagcgagactaattttagcgttatggcgagttttccctattttcgctaa
aataaatctcgctaaaacacgccaaatcgacagatcgctaaaatttatcc
acgcgaaatttctggttatattgccttgatacatttttatcaataggaag
ggtttcagtgcaaagaaatgctagagaaagaattaaatcaataatgtaat
acgagtattcgttaaaatttatccacgcgaaattttttgaaatcgtgatt
cgctaaaatataaatccaaaaaaaaatcaagattttcctgactcgctaat
atacgctaaaattagtctcgctaaaatttctacgattaaagtacgtgaat
tttcccttttttccaccgatcatgagcagttttcccgattttcccgaaaa
ttttccgatttcctgaaaaatcggATTATTGCGtgaaattcgaagaaaat
ttgcgtgaatgcgtgaatttcgaaaaaaaattgcgtgattgcgtgaattg
agggtccgctgggggcctctttTAACACAGCCTTCTCAAAACTTTCACTA
TCGTTTCACCAGCTATCCAGGAGAGCCAAtaataagttatgaaaaaggGT
TCCAAGAAAGCGGTtgtaaagatttcaaattttgaataaaaatacaAGTG
AACTTAAGTAAAGTTTAGGCCTAAAACTGTTCAGAGTGAAAGTAATACCT
TCTGTGATTTCAATCTCCGAAGGTGGGAATTCAACCACTACTTAGGATGA
GTAGTCTACAATATAGACAGCTCCAGGATTTTTAGGCCTAActagtagga
gttttacgctcaaaacaaaggaagatatgacgtaagCTAAGGATGAGTGA
ATCTCCAAATGCAATTGAGATTTGCATAAAAATCTCATCGCGTCAGTGAG
ACAGGGctgtaatattttattttattcactAGCCACAACCATTTACAGAA
TCATTTAGTCATTTTGAGGGTGATATGATAAGATGaaagttgcgagttac
gagttacgagctgcattttaacaaaataaaatcgcgagttgtgagttacg
agttgcattttaacacacaaaattaacgagttgcaaattgaaagtgcgag
ttgcaaatcgaaaagtgcgagttgcaaattaaaaacaaGTCTCAGCCTGT
TATCTTAGATAACAGcacaaaaaaagcttaaaaccCAATGCAAAGCATGG
AAAACCCAgccaatacacctttcccgagttTATTTTTTATCACATGGAAA
CGAGGCCAGGTAGGacgaaaatgtaaacattgaaaAATCGAAGCGGAGAG
ACGTAAACATTNGAGGCCAGGTAGGacgaaaatgtaaacattgaaaAATC
GAAGCGGAGAGATGTAAACATTAGCAGCTTGCTGCACTTCACTCACTTGA
ttggccattttgaattttgtttatcCTACTCGGCCTCGTTTTCATGTTGA
AAATAATAATCTCGGGGAAGGTGTATAAACAAGTTCAAATCAAACTATAC
ACTTTAGCTCTACTTTATTCATATCACCATGGTTACTTAATAGTATGATT
AAACATTTCCGGAATTGAAACAAATGAGAATGAGGAAAAACTGGTGGTTG
CATGGTGAGCAGCAATAATAATTTAATAATCATTTAAGAAATAACTTAAT
TCTTTTATCAATAGAAATGTTTTTCACACTTACTGACTTTtcgatttgca
actcgcacttttaatttgcaactcgcgaattttgtgTATGAAAAtacaac
tcgtaactcgcaactcgtgacttaattttgttaaaatgcaactcgtaact
tgtagctcgtaaaaagtaactcacaactcgtggttctaaatgGAACTCAT
AACTCGCATATGAAAAATCCTCTTCTGAGGAGATTCAACAGTGGTTTGAA
GCACAGAAAACATTGATTCACGATTAGGATTGATTTAAATGGAAAATGAA
GGCAACTTCCATTTGACTAagtcatattttttcaaaataattcacATTTA
TACAGATGCCGATGTATTTCCATGGAGGGACGATGGTAACTTTATTCTTC
AAAGATTGGATGACGATGAGCCAAAAAGGTAACTTTATTTACTGAGAATT
TGaccaaataaaaattcattcaacTCATTCAACCTTCAGAAGAAAGCTCC
TTCAATACTCAAAACAACATGGCAACAAAATAGCAATGGAGGTCAGtact
aggctgcacgcatccactctgatatgttttgttatggggatgcgtatcgt
gtataaaattgcCGTCCCAGAGCTACCCCAGTCTttctgtttttgagttt
tagaaacttgatttgAAGTTTAACATGAGAGATCTTCTagtttcattaaa
ttttaatcaaaaatttggGCGGCTAGAAGTTAATACTATCATTggatttc
tgaagattttaaagaaaattgaaacaggctACCCCAATAACTCTCGGACA
GGAATTTTAATGCCTACGATAGCCTTTTTTCAATGTCAAATTCCCTTTCC
ATTTCCCCGAAAATCATTTCAGTTGAAATTTTGCCATCAACAGTAAACTT
TTGTCCTGGATCATAGAGCACATATGAAGTTTTTCATGCTGATGCAATGG
CTTATATTCTTGCGTTCTAAATCTAAATAAATGATTATATTCTACAGTAA
CAAGCTGAAAAAGAAATCTCCAGCATACAGCCCACTGGCCTTTATATATC
TCTGGACAAGttactcaatcccggccaagcaaaatctatgatcggagttt
tttgaaaagtggtaccctaatgacGGCACTACTCACTAGCGGTGAAAATG
CATCAAGAGCGCTAGATGTACTTTTCCTTGAATACTTttaatgatgtagc
gccgttagacgttaatttttaacattgcagtGACTTCTTCACttcttcca
aaaaaactccgatcaaagatggcagatatagcttggtccagggatatata
aaggtcagtgatacAGCCTAATGAAATGTTCAAAGACAGACAAAGCATCC
TGACAAAACCAattgttttatcaaaaacttttatttacaaatactATACT
TAACTTACAGAATTCAATGGAGCATGCGTGGCGTTGTTTTTGGTATCAGC
TCTGTATGAGGGATTGAAAGTATTGCGAAAGTTGATCGTCCCTGGGAAAA
GAATCCAATGTAGTGCACAgtaaggaaatattttaacatctCGAACTCAA
TATGGGGtgatttttttccgaaaaattgcaaagtgaccCCAAAGCTTAAA
TTTGTTCCGAAGGGATCAGAAAATCGTTCAAGGTATAGGGTTCGAGTTTG
AGAAACAGTCACTCAATTATAACATGTTTGACTTtgtaatacacgctttt
tttataaagatggtgtaaatccatttcatcatggatattcttaacttttt
tgggaaaatcatccgaAAAtcttcttacagcattcttaggttaggatcct
aattcagactagattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtatgtgcgggccaaaaattggcttt
taaaattgcacccttacagtgcatNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttagagt
gcattttccccaaaattttctatccttttcgtgcaaaaaatggtcaaaat
tctagcatttttggtcaaaatatctagatttttcaaaaaatttcggaaat
ttctacccttacagtgcatctctagtttttccgacccttacagcgCATTT
TAAACAAactggaaaaggtacccttaggacccgcacatacccgtcggtct
ttttgcccagctgccccccccgggcatacgtctcaagcataaaatggcat
ttttgttaaaggagtgagccttacttaggggtaattgacaatttataatt
aaaaatgctctaaaaatggtattcttagcttgagtagcaaaattccgtga
tggtgatattcttagcattattcttaatttttggccatttatatcatgga
cattcttataaagtgtattcttataaaaaaagcgtatatatcAATGAATG
TTGTTTGCTTGTACAATGAAAAATTGCTGTTAGAAAGTTTCAATAAAGTA
TGCTCTGAAATTTCAAACTATCTCATAATCTAACAATGCAGCTGAagtaa
ttttaacaaaaataaaccagctgcgctggaaagtcagcccaaaATGCTTA
GAAGGCTTAGAATGATTAATGATAATGATTAAAATCTGAGCAGTTTGAAA
GAACGTATCTATTTGCTCGAAACGTTCAGAAGAAAACAGAGCAGTGCATA
GTGGAATCCGTATCCAAAGCAGAAGTCGGTGAAAAAGATTTATTCCGTTG
TTGTTATACTCTTTCCATGAGAATAATAAAAGACCCAGATAGAAGAAATA
GTCTACAAGTCGTATATAACTTTTAACAttattcgaagaaaaaaaatttc
tttgatatactCACTTTCTCCATCTACGCTTTCTCTATAATTAGCTctct
ttatttacaatgcaaaagCATCTTTTATTAACTATGGAATATGACACAAA
TAAAGAatcttttttctcttctttttttcttattattaattataaggctt
ctttttatgttatgtgttttttttcttttcttattttatcttGCTAAGAA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATCttgctaa
gaaaaaattattttcgcgcgctaaataatcccgaaatcctgtttcccgaa
aataatccgaaatcggaattaaaatgaaagtcttaacgacgagcgggaaa
aaaatcgtcgaaccgatttgaagagtcACCGGGGCTGACTAATAAATCAA
ATGAGTAAACATGTATCGATTCTCTTCATCACATGATTTGCCCAGAAATA
TACGTACAACATTTGgtgaaagaaaacaataatTTGAATTTGGCAAGtca
ggaaaaattaaattttggctTATTTTGGCCCAATCagccaaatttaattc
ccgccAAAAGGTTGTGTTACTTGTGTAGGTGTTCGAGCAAAATGCTCAGG
TAAGATTCTTGGTCAACCACAACATTAAActaaacataaaacaaaacaag
acacctttaaaaaaaagattaaaacaaaagaaactttTAGCAAGACACAA
AAGATAGCATAAATGTATTACTTTAGagtgaatttaatttggcaattttt
gccagATCTAATCGCGGTCAAAATTAATCCACCCAAGGTATGTTGCACTA
GAGTAAAACCATTAATTTTAACTGATAGAATCCagtcaaacaaaaacaaa
aactaaatacGCCAATAAGTTTGATGGACTCAAGTCATAAAAGTCAGCAA
ATTAGTCGTTTTGGAGAACGCtacggtcttttgaataactaattactcca
gcagGACTATTTTTAATGATAACGTCATCATATTGTTTTCTCATTTACAA
CACAGCAGATACCTagggacaagataatttatctcgTTTGTATTCGTCGA
GGGGAAGTAATGTTAGTGGAATAATTTGTTATGCAATAGGTCGTAGCGTT
CTCCTAAACGAATATTCACTTTGCCAATTGGGACATTTTTCCGAACTGGA
CATCATAAATATGTTTTACAagaacttaagggctctgaccgtagtgaatt
tttcataatttccgtgtttaaaatgtgttttctgactgatgtaaccaact
gtcgaacgtgctaaccgcactggctcaacttcagtatctttgaaatcatt
cgtaggcccaattgtaaacttaatggcttaagaaaaattatagcattttg
ggttttagcctcgtttaggctaaaaactcgtccccaggctccaaaaatca
aaatcttgaaaaaatgaaaacaacgcccccagggatttgcacaaggatca
agtgtgcaaaatttcaacccaaTTGGTATGGACcaattttgaagtctcca
acctgccccaaagttttagcctcgttttggcgaaaaactcgtccccaggc
cccaaaaattaaaattttgaaaaaataaaaaaaacactcccagggatttg
cccaaggatcaagtgtgcaaaatttcagcccaatcggatcatttttgaag
tctccagcctgccccaaagttttagcctcgttttggcgaaaaactcgtcc
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgatttgcccaaggatcaagtgtgcaaaatt
tcagcccaatcggaccatttttgaagtctccagcctgccccaaagtttta
gcctcgttttgacgaaaaactcgtccccaggccccaaaaattaaaatttt
gaaaaaatgaaaaaaacacccccagggatttaaccaaggatcaagtgtgc
aaaatttcagcccaatcggaccatttttgaagtctccagcctgccccaaa
gttttagcctcgttttggcgaaaaactNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgtgtgcaaaatttcagccaaatcggaccatttttga
agtctccaggctgccccaaagttttggtgacagacacacagacacacaca
cacacacacagacacacacacagacattctcagattctaactcaactgaa
gttgagaacaaaactatggcatgttatacattttctatcAATGAAATTGG
ACcagcaattttattttattttacacaatattttaaacaatataTTTCGA
ATACTTGTGATTCATCTTCAGgttctaaaatataaaatagtaaaaatata
tattttccataACACGCATACTAATCAAAGAACTAATGtaactaaaaaat
caaaatcaaaattcactAAATCAAAAGTGAATTCCACTACAAATTCCCCT
AAGGCAATAAAATCTATTAAATCTTTATTGTATTACAATATTATAcatat
tatacattttctgttagacaaaatattcctgaatctgaaaattcaaaaat
tgcattgaaaaaatttgatgaagaagaaaatgaagacttttgcgaggaag
agtatttcaattttgaagagcttagtttcggcgaagaaaaaacattttga
aaaaatttacttttacttttactttaaattttatcttttaccgaataata
aaattttttgtagaaaatttttgtaaatgcttctttgtctcgaaatcttt
aaaatagtggtttttcatcaatttttcatctggatttcacttaaaaaaac
agtcataacttttgacacatctttttagaaaaatttttccgcaaaattta
aaatagttcaattctttgcggacagtttgaaaaaacttcgaaacaaaaag
gttaattacccattaaaacttagcactttttataaaagaaggtaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNggatttgattaaaaagcaatttataaaggcaa
ttctttgttaaaagtgttaaagaatctaaaacataactttcatgttcaga
tactaaaatcaattttctgctGCCATTGGAATTACGGTAAAATCTTCATC
AATCATGAAAGGACAATCAAAAGCACATTATAACtagtattgtttttttt
ttcgctttaaatCATATGCACTACCAGATAACTCaagttttgatctaaaa
aaaaaatctttgtcaCAAACTTTTGCTAGGCTCCCGCCGGCGATGTCAAT
TAAAAATCGCGATTACTCCACGTTTATGGATACAAGAGAAACAACAACCA
GTGCGGAAAGAAGGTAATTTGTACGCCGGATATTTTTTTGGTGTAACATT
GAACCTGGTCTTTGAGCTTGAATGTCTACGCATGATTAAGACTGGAACAA
CTGCAACAATAATCAAAAAGTCTATTCCAGAGAAAGAGTATATTAGGTCA
CTCTCATTTTTGACTAGATACTGCCAGGAGGGACCTACATAAAGACAGTT
CAGTTGGGTATAGACCCCAATCATTGTGGTTGACAACTGGACGACACGAT
CTTGGAATGGCTCAAATAGTGAATCCACTGAAGTGAAGGCATAACTGGTA
ACGGTTGCCAGCggacaatttcatattttttcaagagATTGAAGTTAATA
CTCGCAAAGGATACACAACGTTTTTCATCTTTGAACGGTGAATTAGTCAA
ATCTTTCTTTAGGTGATATAAATAagaactagccggtacccggcgtcgca
cacCGGTTAATTTGTAGCTGAACACACTGAAAGTTCTTTGggtgttgaag
ctggcttaaaagcacgatcaaatgaaaaagaaaaaaaatctattcaaagt
ttgactctagccCTCCCCCTGtgtattaattttttgtttaagtcaaaaac
TATCAGAAACAGCATCGCTATTAAAATTATACCGTACCGGAGTCGTAAGg
cgaaaaataacaataatcagtcagaaaatagagcgttagcgaaaatgcaa
tttggcgatttttagaaagctccggctaccaaaatcagtttcattgaaaa
tttaacCATGCTTAATGACTTAATCTTATAAATGATATTTAtgtttgaaa
aaacaaagatataaaacgaaaaagtccaatgaaaatcttgaaaaacggca
atttccagcattttcggctggaaaatTTGTTTTCTGAAAAATCCGACTCG
GCCACATTTTGAACATTGCTAAtgcgcatctttgtgcaaaaaatcaaata
aaactaatgatgaaatttcgaaaaaatgccaaaaacctgtttttccggca
tatttacAGAAATTTCTGCCGGAAATATAAGTAATAGTACTTCAAAAAAC
TTCACACACACATGCAGTGTCACAGGAGCGTGGTAGGTCGACTAAACCTG
GGAAggcgattttagaaaatcttgattttggcgccccctagaaaaagtaa
atatttttttaaaataacgcgagcgaagcgaacaCGAAAATTTTcgggta
ttttctctctttttggctgaaaactgccatgtctaaggtgtaaaagacca
aaggggcgccgaaattagtaatTAGAGGCGTCTTTTTGCACCCTTTATAT
TTCGGCGCCCCTCCGCTGGGGGCATTCACCTTGTGAcgacatagtgtgca
gaggggtctgaacccccccattaatatttcattccccccctataaaggta
tcccccctatttttaaaattttttgatcccgcaCCATTTACAGGGGTCTA
AGCCGGGGTTCAAACTCTTTTGTTCAAACACaaaattcgaacatttttat
tggcaatagttaaaaaacaaggaaaaacaaaatctgATTCAAAACAGAGT
GCAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggttcat
actaTGTGATGATGATGAACACACCGAATTTAAGGGTCTCCATAGGGCGA
TCAACAATGAAATGACCCAAAAAAGCTATATTGTTAAAATATACTGATTT
TGACGCTCCAAAATTGAAACCCATGAAGCCATTGCTTTAAAATCTCAATC
AAATCTTgaactttttgatatttttacagaTCTGCAAATTTCACCTCAAA
CAACAATGGGCCACCAACGTAAGCATATTTGATTGACATcatctttttca
aaactttgtccTTGAGGGAACTAAATTTCGCGGTAACTAACTTTCgcgga
acttattttcgcgtAGCCAGTGTGTTccaacaaaccaaattttttctttg
tattaTGGAACAAATTTTTGTGGTTGACGCCCACTTTTTTGTCGAAATTC
TTTATGTTCCTAGGAGTTTTCGAGGATTTAAAGATGATAAAAAGTTGCAA
TTTGCAGAACTAATATTCGCGACAGAcacccaaaaacgcgaaaattagtt
cccgcaaaaactAGTTACCGTGAAAATAAGTTTCCTTAAGGTAACAAGAA
GAATTCATGGTTCAGAAGAGTTCTCAGTTCTCCTTATTAACGTTAAATGG
GATATGTAAGAAACCTCCAGATTAGGAACGAAAGACTAGGGGATTCAATG
TTGCTTTTTAAAAACAGATAATGGAACGTAAAAACAATAAAGTCAAAGTT
ATGAGTTTTCATTCACAAGAGCGTACCCCTACTTCGAAATCAGAGTTTTG
AGAAGAGTCTAAGAATTAGTCCTTTAAGGCCGGTCttcacttgcgcgcgc
tgcgatcgctcTTCTTCgaacaaagcttccacgctattggtcaaaagaaa
aatgaagtaatTCCATTGGAGTGATATGATGTAACGATcgcgcgcttgaa
aaaaaagttgaaatacattcaactttttttccaagtGCGAACTgcgtttt
tatgacgtaatcttttctcaaagcaaaaatgattgaagccaaagttgcga
tcgcagcgcgcgcaagtggagaccggcctttaaatTAGAAAGTTACATAC
CTTTCACTGTTTATTTTATAATAGTTTACAACAACGACTCATTGTCCACC
TGATCCAGACTGTGTTACACATCATTCAAGTGTTCCTTGGTTATCTTCTC
ATGTTGGCTTTCATGACGTACAATTCTTTAGTATGTGTGTCCATTCTCCT
GGGGTATGGTTTCGGATATCTGGTGTTCGCTTGGTGGACACCGATGGTCC
CTGGAGGCGATGGTGAAGATGCTGATTGTTGTAATATGTGATCAGAACGT
TCTGTAGAATGTGGAAAAGATGAATATTTCTTTACTTATTAATAGTCAgg
aagaaacttttttattctgctactggcagtttcatgccactttgGTGACA
ATATCTTCAGGCAACtaaaacacttttttattctgctactggcagtttca
tgccacctttgtgacaatcttcaggcaattTCATATAATTTCTTTTTGGA
ATATAGTTAAATGTCAAAAGTTTTTTACTCTATTCTCATGATTCTTTACT
TAGTTTTTTAAATGGAAGATAACTTTTTACTCTATTCTCAtgatttgaaa
atctttgcGAATGGTCGGGACTCGCGAAATTTTCAGACATTTAAGTAGTT
TTTAAAACCAAATGTAATGATGGTTTCGAGTTCTTATGGTTGACAAGTAT
ATACTGCAATGAAGGTGAGTCAACAGTGGTTGCAAAGTCTAAAGGTGATC
GAAATCGTTTGTGGAGagcaaataaaagaaataacaacaaaagaaactCT
CCGCCATTTTGAATACCTTAATTCCCTTAATTTTTGCGCCTTTTGTTTTC
GCGCAGCTCGTAAAATAGAACATTCGCGCAttcttta Coding sequence (CDS) from alignment at scaffold_100:203177..216913+ >TCONS_00045655 ID=TCONS_00045655|Name=TCONS_00045655|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_100:203177..216913+ (Clytia hemisphaerica)
TGTAATCACGAGATCATCAAGTCATCGGATCATAAAGATTGTTCTAAGAA
AAATAGAACAATTTTCTTTACACATACAAAGCACAAGACAAgacaagatt
ttttgaaaagatatacaaaggaatcttctgTACACCACTTTGCTACCATT
ATGGATATGAAACACATGACACACGAGAACAACAAAACAGGAATGGATAT
GGGAATGGACATGGATATGCCGATGTATTTCCATGGAGGGACGATGGTAA
CTTTATTCTTCAAAGATTGGATGACGATGAGCCAAAAAGAATTCAATGGA
GCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGTATGAGGGATTGAAAGT
ATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATCCAATGTAGTGCACAaT
CTGCAAATTTCACCTCAAACAACAATGGGCCACCAACTTTACAACAACGA
CTCATTGTCCACCTGATCCAGACTGTGTTACACATCATTCAAGTGTTCCT
TGGTTATCTTCTCATGTTGGCTTTCATGACGTACAATTCTTTAGTATGTG
TGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTGTTCGCTTGGTGG
ACACCGATGGTCCCTGGAGGCGATGGTGAAGATGCTGATTGTTGTAATAT
GTGATGTAATCACGAGATCATCAAGTCATCGGATCATAAAGATTGTTCTA
AGAAAAATAGAACAATTTTCTTTACACATACAAAGCACAAGACAAgacaa
gattttttgaaaagatatacaaaggaatcttctgTACACCACTTTGCTAC
CATTATGGATATGAAACACATGACACACGAGAACAACAAAACAGGAATGG
ATATGGGAATGGACATGGATATGCCGATGTATTTCCATGGAGGGACGATG
GTAACTTTATTCTTCAAAGATTGGATGACGATGAGCCAAAAAGAATTCAA
TGGAGCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGTATGAGGGATTGA
AAGTATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATCCAATGTAGTGCA
CAaTCTGCAAATTTCACCTCAAACAACAATGGGCCACCAACTTTACAACA
ACGACTCATTGTCCACCTGATCCAGACTGTGTTACACATCATTCAAGTGT
TCCTTGGTTATCTTCTCATGTTGGCTTTCATGACGTACAATTCTTTAGTA
TGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTGTTCGCTTG
GTGGACACCGATGGTCCCTGGAGGCGATGGTGAAGATGCTGATTGTTGTA
ATATGTGATGTAATCACGAGATCATCAAGTCATCGGATCATAAAGATTGT
TCTAAGAAAAATAGAACAATTTTCTTTACACATACAAAGCACAAGACAAg
acaagattttttgaaaagatatacaaaggaatcttctgTACACCACTTTG
CTACCATTATGGATATGAAACACATGACACACGAGAACAACAAAACAGGA
ATGGATATGGGAATGGACATGGATATGCCGATGTATTTCCATGGAGGGAC
GATGGTAACTTTATTCTTCAAAGATTGGATGACGATGAGCCAAAAAGAAT
TCAATGGAGCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGTATGAGGGA
TTGAAAGTATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATCCAATGTAG
TGCACAaTCTGCAAATTTCACCTCAAACAACAATGGGCCACCAACTTTAC
AACAACGACTCATTGTCCACCTGATCCAGACTGTGTTACACATCATTCAA
GTGTTCCTTGGTTATCTTCTCATGTTGGCTTTCATGACGTACAATTCTTT
AGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTGTTCG
CTTGGTGGACACCGATGGTCCCTGGAGGCGATGGTGAAGATGCTGATTGT
TGTAATATGTGATGTAATCACGAGATCATCAAGTCATCGGATCATAAAGA
TTGTTCTAAGAAAAATAGAACAATTTTCTTTACACATACAAAGCACAAGA
CAAgacaagattttttgaaaagatatacaaaggaatcttctgTACACCAC
TTTGCTACCATTATGGATATGAAACACATGACACACGAGAACAACAAAAC
AGGAATGGATATGGGAATGGACATGGATATGCCGATGTATTTCCATGGAG
GGACGATGGTAACTTTATTCTTCAAAGATTGGATGACGATGAGCCAAAAA
GAATTCAATGGAGCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGTATGA
GGGATTGAAAGTATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATCCAAT
GTAGTGCACAaTCTGCAAATTTCACCTCAAACAACAATGGGCCACCAACT
TTACAACAACGACTCATTGTCCACCTGATCCAGACTGTGTTACACATCAT
TCAAGTGTTCCTTGGTTATCTTCTCATGTTGGCTTTCATGACGTACAATT
CTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTG
TTCGCTTGGTGGACACCGATGGTCCCTGGAGGCGATGGTGAAGATGCTGA
TTGTTGTAATATGTGATGTAATCACGAGATCATCAAGTCATCGGATCATA
AAGATTGTTCTAAGAAAAATAGAACAATTTTCTTTACACATACAAAGCAC
AAGACAAgacaagattttttgaaaagatatacaaaggaatcttctgTACA
CCACTTTGCTACCATTATGGATATGAAACACATGACACACGAGAACAACA
AAACAGGAATGGATATGGGAATGGACATGGATATGCCGATGTATTTCCAT
GGAGGGACGATGGTAACTTTATTCTTCAAAGATTGGATGACGATGAGCCA
AAAAGAATTCAATGGAGCATGCGTGGCGTTGTTTTTGGTATCAGCTCTGT
ATGAGGGATTGAAAGTATTGCGAAAGTTGATCGTCCCTGGGAAAAGAATC
CAATGTAGTGCACAaTCTGCAAATTTCACCTCAAACAACAATGGGCCACC
AACTTTACAACAACGACTCATTGTCCACCTGATCCAGACTGTGTTACACA
TCATTCAAGTGTTCCTTGGTTATCTTCTCATGTTGGCTTTCATGACGTAC
AATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCT
GGTGTTCGCTTGGTGGACACCGATGGTCCCTGGAGGCGATGGTGAAGATG
CTGATTGTTGTAATATGTGATGTAATCACGAGATCATCAAGTCATCGGAT
CATAAAGATTGTTCTAAGAAAAATAGAACAATTTTCTTTACACATACAAA
GCACAAGACAAgacaagattttttgaaaagatatacaaaggaatcttctg
TACACCACTTTGCTACCATTATGGATATGAAACACATGACACACGAGAAC
AACAAAACAGGAATGGATATGGGAATGGACATGGATATGCCGATGTATTT
CCATGGAGGGACGATGGTAACTTTATTCTTCAAAGATTGGATGACGATGA
GCCAAAAAGAATTCAATGGAGCATGCGTGGCGTTGTTTTTGGTATCAGCT
CTGTATGAGGGATTGAAAGTATTGCGAAAGTTGATCGTCCCTGGGAAAAG
AATCCAATGTAGTGCACAaTCTGCAAATTTCACCTCAAACAACAATGGGC
CACCAACTTTACAACAACGACTCATTGTCCACCTGATCCAGACTGTGTTA
CACATCATTCAAGTGTTCCTTGGTTATCTTCTCATGTTGGCTTTCATGAC
GTACAATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGAT
ATCTGGTGTTCGCTTGGTGGACACCGATGGTCCCTGGAGGCGATGGTGAA
GATGCTGATTGTTGTAATATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045655-exon-scaffold_100-1491911889:203177..203287 | TCONS_00045655-exon-scaffold_100-1491911889:203177..203287 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:203177..203287 | TCONS_00045655-exon-scaffold_100-1510915933:203177..203287 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:203177..203287 | TCONS_00045655-exon-scaffold_100-1575043694:203177..203287 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1491911889:203839..203944 | TCONS_00045655-exon-scaffold_100-1491911889:203839..203944 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:203839..203944 | TCONS_00045655-exon-scaffold_100-1510915933:203839..203944 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:203839..203944 | TCONS_00045655-exon-scaffold_100-1575043694:203839..203944 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1491911889:206132..206204 | TCONS_00045655-exon-scaffold_100-1491911889:206132..206204 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:206132..206204 | TCONS_00045655-exon-scaffold_100-1510915933:206132..206204 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:206132..206204 | TCONS_00045655-exon-scaffold_100-1575043694:206132..206204 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1491911889:207187..207295 | TCONS_00045655-exon-scaffold_100-1491911889:207187..207295 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:207187..207295 | TCONS_00045655-exon-scaffold_100-1510915933:207187..207295 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:207187..207295 | TCONS_00045655-exon-scaffold_100-1575043694:207187..207295 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1491911889:215206..215244 | TCONS_00045655-exon-scaffold_100-1491911889:215206..215244 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:215206..215244 | TCONS_00045655-exon-scaffold_100-1510915933:215206..215244 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:215206..215244 | TCONS_00045655-exon-scaffold_100-1575043694:215206..215244 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1491911889:216101..216913 | TCONS_00045655-exon-scaffold_100-1491911889:216101..216913 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1510915933:216101..216913 | TCONS_00045655-exon-scaffold_100-1510915933:216101..216913 | Clytia hemisphaerica | exon |
| TCONS_00045655-exon-scaffold_100-1575043694:216101..216913 | TCONS_00045655-exon-scaffold_100-1575043694:216101..216913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:203177..216913 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007274 | Cop_transporter |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035434 | copper ion transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005375 | copper ion transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035434 |
copper ion transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005375 |
copper ion transmembrane transporter activity |
Blast
BLAST of TCONS_00045655 vs. Swiss-Prot (Human)
Match: COPT1 (High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.540e-19 Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 2
Query: 248 VTLFFKDWMTMSQKEFNGACVALFLVSALYEGLKVLRKLIVPGKRIQCSAQSANFTSNNNGP-----PTLQQRLI--VHLIQTVLHIIQVFLGYLLMLAFMTYNSLVCVSILLGYGFGYLVFAW 598
V L F + + E GA VA+FL++ YEGLK+ R+ ++ ++ S N T+ Q+++ HL+QTVLHIIQV + Y LML FMTYN +C+++ G G GY +F+W
Sbjct: 54 VELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSW 177
The following BLAST results are available for this feature:
|
