TCONS_00045641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045641
Unique NameTCONS_00045641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045641 ID=TCONS_00045641|Name=TCONS_00045641|organism=Clytia hemisphaerica|type=transcript|length=1248bp
GNATACGTGCACGTGAATTATTACGTCCTTTTTCAGCCTCACTTGGCGTT
TGCCTACACTGTTGTTCGTCGTTACATATTTTGAGCAACTTCGCATAATG
TCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGACGTCACTAAATT
TCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTGACCGTCACTTAG
AAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCATATTATTAACTTG
AGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGTCATTGCAGGAAT
CGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGACCTTATGGAACAA
GAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTACTCCAATCGCTGGA
CGTTTCACACCAGGAACATTCACCAATCAAATCCAGAAAGCTTTCCGTGA
ACCACGACTTTTGGTTGTGACAGATCCCCAATTTGACCATCAATCCATCA
CTGAATCATCTTATGTCAACATTCCAGTCATTGCGCTTTGCAACACTGAC
TCACCTTCACGATTTGTTGATATTGCTATCCCATGTAACAACCGTGGTGT
GCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGAGAGGTCTTATTCT
TGCGTGGAATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCTGATTTA
TACTTCTACCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGCTGCTGC
TCTTGCTGCTGCCAAACCAGAAGAAACTTATCCACAGACGACCTCATCTG
ACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGCACTGAC
TGGGGAGAACAACCAGCAACAACCACTACTGATTGGGCTTCAGAACCAGT
CACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATTGGGGAG
CCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAACACTACT
ACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGCGTGATT
TTGATTCCATGAAAAGTCTGTATTGTCGTTCATTTTTCGAAATACAAGAA
ATCGAAAAAACCGAAACCATCTTTATCTGATTACTTTAATattcttacac
gttttttttttttggacctaccccggtgggctgtaggtcctataaattaa
cctctgttcgttcgttcgtccgttcgttactagcttttctcgggattg
Run BLAST on NCBI

protein sequence of TCONS_00045641-protein

>TCONS_00045641-protein ID=TCONS_00045641-protein|Name=TCONS_00045641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MSEGIEALQLKEEDVTKFLASGAHLGAQNVDRHLESYVYKRKADGIHIIN
LRKTWEKLVLAARVIAGIENPADVCVLSSRPYGTRAVLKFAHHTGATPIA
GRFTPGTFTNQIQKAFREPRLLVVTDPQFDHQSITESSYVNIPVIALCNT
DSPSRFVDIAIPCNNRGVQAIGTMWWMLAREVLFLRGIISRKTPWDVMPD
LYFYREPEDIEKEEQAAALAAAKPEETYPQTTSSDWVSAPAATEQVGGST
DWGEQPATTTTDWASEPVTGKVEGFSAVKEDDWGASNYKSAGWEADTTNT
TTTADWGASTTEGDWA
Run BLAST on NCBI

transcript from alignment at scaffold_100:76504..85628+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045641 ID=TCONS_00045641|Name=TCONS_00045641|organism=Clytia hemisphaerica|type=transcript|length=9125bp|location=Sequence derived from alignment at scaffold_100:76504..85628+ (Clytia hemisphaerica)
GNATACGTGCACGTGAATTATTACGTCCTTTTTCAGCCTCACTTGGCGTT
TGCCTACACTGTAAGTAGAGCTCCATTTTATATCTGTTTTTCGAGTTTAC
TCAATCTCAGAATGAAGTTATTTCGCCCCAACTTTGGTAAGTCATTCAAC
ATTGAAATGTCTGGTATTTCAGGTTGTTCGTCGTTACATATTTTGAGCAA
CTTCGCATAATGTCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGA
CGTCACTAAATTTCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTG
ACCGTCACTTAGAAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCAT
ATTATTAACTTGAGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGT
CATTGCAGGAATCGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGAC
CTTATGGAACAGTTAGTATTTTTCAATGTTTCACATATATAACatgtttt
tttggtaatcattgCCCGCCTTAACATTCTAGGCCGATggaatttaatgt
tatgtttaccGTAAGCCGCCCGGGTGTTCAAAAACCTGCCGCatcaagtt
gtcattatttgccattttctcgaaaagttgtcattatttttcctcCCATT
TGAgcagagaacaaaaattttcgaagttgatatcaaaacaaacagcACGT
GGCTTTTTTAGATTGTTAACGACCCGAACAGCCCTCTAGTAGTCTTTACc
gtgtgaatttaattttgtcatattgtggagataacattatataattctct
agcgagaagaaaaatatttatctcTTTAAGCTCGTACAAACGGGAAccaa
aagaatcaataaaaacacgAGAGTTCCGAGACACAAGAGGAGTAACTCAA
TGTTAGACTTCAGATTGTGTATCTAtaaggaaaaacgaaaaatctggtaa
aaataaatgtttatgggaaaataacgaataatgaataatgaaaacttggc
cgcattgaattctgaaaatcatcattacggtaaacatatcattaatttcc
atcagccctactgaaaaaattttaggaaatttttttgaccaTGGGTACAT
AAATCTTCCTGTTGACTAGCCCTTTGTTAAACAATCAAATAACTTAAATT
CCTCAAAACAAGGTTGCAAACTTATTAGTGAGGATAAAATTGTCAATTCA
CTTTTATTCTAGAGAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTAC
TCCAATCGCTGGACGTTTCACACCAGGAACATTCACCAATCAAATCCAGA
AAGCTTTCCGTGAACCACGACTTTTGGTTGTGACAGATCCCCAATTTGAC
CATCAATCCATCACTGAATCATCTTATGTCAACATTCCAGTCATTGCGCT
TTGCAACACTGACTCACCTTCACGATTTGTTGATATTGCTATCCCATGTA
ACAACCGTGGTGTGCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGA
GAGGTATATAAATTTTCAGTTCTTTTCTATCCAACTATGGCTACATTact
aaatctaaaaaataatatttttattttgatacatAAACAAAAAAGCTTGG
TATGTGGCTTCTGGGCAATCTTAGAGGCTttcatttgtaaaaaaatattt
agtgtTCAGGATCTTCTCTTTCTGAACCTGGTGACATTAATGATGATCTA
AGTTATCCCTGGCATAAGACAAAGTGTTGAAAACGCACGTCAGACTGAAA
TGTCACCAGTTATTATTTCAGAAAAATCTGTCAGGCCTACCTATCCTTAT
TTACCTTAATTTTAAACATGCTTAGTAAGATGTGTGCAATCTTGTATCCC
AAATGCAATGAAAGCTGACCCTAggtaaaaaaacagtttttggcAGTTTG
ACATATCCTGATATTATAAATTTAGCAGATAAGCAGGGGGTGGGATACAC
AcacttttttacaagaatatgTACAGATATGTCAACCTCGGTGTGCCCCT
GGGTCGTATTATCTGCTTTTTATGTTTTACTGTGGAAGATGATTATAATA
TCTCAGGCGTAAAACGTAAGTTAAGCTTGGGATATACAATGCTGTTTATA
AATGTTGGTTGATAGTTTTAAGTGTTCTAATGGTCAGTTTATGGAATATT
CATCCaaaataattcttataaaagtcGACTTTATTGTATTTTTCCAAGGG
TCAAGGTTGAAAGTACATATTGCCTTTGTTACTTAGGGCACTTGGTACGA
AATCATGTGCGCTAAAAATGCTTAATATGTGTATTTTGTCGCTCTCCTAC
TTTTTTGTTCCTGGAAAAGCCTATCTAAGCCATTTGTTTGCTTGAAATTG
TCTGCTAAAAATTACCAATGAAGAATTTAGTTATCCCTGTCATAAAATGA
ATGTTGAGGGTAAAACTCTGAGGTGTTGTCAAATTTGAATTGAGAACAAA
GACATGTCAAAATAGTTATGTTATTGAATTGTTCAACTCTTGATTATTTC
TGATTCCCCTGAAACCTACAAATTGAATGATGAAAGTTTCAGAGGCTGCT
TATGAAGTTGAATtgactttttcaatttcagatGGATGGCCTCTTTTTAg
aagattttctaaaatgttttcAAGTCGGCCTTTCAATTAACTTTTTTCTT
GGGACAGGTTTAGCAACTAAGTGGAGCAAGATTTAAGTGTTCTAATGGTC
AGTTTATGGACCAATAGGctgacactgtcctgatatgaaacttATGTAAa
atgaaaacctttaaattcTTATTCAACCTATGTTTATTCTTCGCGGTTTT
GCTTTAATTGTTAGTTTTAAGACTGCAATGGTTTTGCAAGCTTTCTTTCG
TAGTGATAACAACCTTCTCTCAAATTTTCTGTTTAATTAGACAAGACCAA
GCTGGATAATGGAATTCTTGATATGCTTAAGTCATTTTTTAGtggaaaca
cccaaaaaaaaaacaggatttGACCCCTCTATGttaataaaaatagaaac
aagGAGGTCAAAATCTGGCTTTTTTTTGGTGTTTCCCTTAAGAAAGGTGa
tgtcatcttgacttacgcgtaTCAAATAGTTTTTTCCAGATATTCTCAAT
TGAACATGCTGAAACAATAACAAAGCTTAAGCCAGGGGGGTTTgtactaa
aatttcagacatgacttttagtgacgtggtggtattacAAAAAAGGCCTT
GTGTAAGTACCatgtaccatgtgtactaaaatcccaaattaggtggggtc
ttcaagaaatttaagaaaaattttagtacatgagtactaaaaatcaccaa
attttaggaaatttaactGTTAGAcaattactttttattttctggtttac
agaCATTTGGAGATGATATTTTAGaccggaggatggaaaaaaaaaaaaat
aaaattgctcttttcaaactttgatgttggaaaaaattaaaaaaaaatat
gttttgagaaAACTTACATACATTAAAGAACGTTTTTAGTAGGAAAATTG
TGTTTTAGTTATTAAAGGCCTGGCTGTTCAGTACAAGGTCGGAAGagcat
aaataaaatatttgtaaaatccaattttatttttattttatttttgcaaa
aaaaacgtcggcgattccgtaaaccagaaaataaaaagtaattgccttat
TGACCAAGCATTTtagacaaaatgaaaaaaactttctatGTAAGATTTAA
ACAACCCTGTGTcacaaattaagcaaaaatttcgtcctcggtggaaaaat
acccttgaatttcagccccacagggaaaatgactttgattttatccccac
tcgaaatttcatgttaaaaaaattgcactccaaaaccaccccCACTGGGt
cttttaaccttggaacaatagaatttctatcccattaGCATTTTAGTAgg
tatttttatccccactgaagaaaaaggtcccaccggggctgtgaaacagg
ggtgtatttaatgttctgattttatatactatggaataaaaaatgttttc
gaagtTGAATGCCTTGTTTTTGCGAAAAACCATGGATAACTGAATAGAAA
AGAAATGCAGCAAGCTGTAAATTAGAGGTGAAAAATAACCAATAAATCTT
TGCAATAACTATAGTAGAGCAGAGCAGAAGTGTCTTGACTGTTTCTGAGT
CTTTATCTAGAATAGAGAGATAGATCATGTTCATTGACAGCTTAAATAAC
CagcattttgttgaaagtccaaAAACCACCACTCTCTGAACCGTACGCCA
AAATAAGCCTAATTTAGGTGGTCACtatgctaaaatgtcaaaattttagt
acatgtgtactataattcaaaaatcatcaaaaaaccttttagtactcata
tatgtcttggATTTTAGTACAGACCTCCCCCCCTGCTTAAGCATCAGTGA
TGATCAAAGTTATCCCTGTCTAAAGACAAAATGTTGAGAACACACATCAG
ACTGAGATGCTAGATTTGCCAAATATATTTTGTCATCTATTTCTTGCATC
ACCTCCACAGATCTCTGACAAACTGGTGATTATTTCCGTTTCCCTTTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCTGTGTcacaaattaagcaaaaatttcgtcctcggtggaaa
aatacccttgaatttcagccccacagggaaattgactttgattttatccc
cactcgaaatttcatgttaaaaaaattgcactccaaaaccaccccCACTG
GatcttttaaccttggaacaatagaatttctatcccattaGCATTTTAGT
Aggtatttttatccccactgaggaaaaaggtcccaccggggctgtgaaac
aggggtgtatttaatgttctgattttatatactatggaataaaaaatgtt
ttcgaagtTGAATGCCTTGTTTTTGCGAAAAACCATGGATAACTGAATAG
AAAAGAAATGCAGCAAGCTGTAAATTAGAGGTGAAAAATAACCAATAAAT
CTTTGCAATAACTATAGTAGAGCAGAGCAGAAGTGTCTTGACTGTTTCTG
AGTCTTTATCTAGAATAGAGAGATAGATCATGTTCATTGACAGCTTAAAT
AACCagcattttgttgaaagtccaaAAACCACCACTCTCTGAACCGTACG
CCAAAATAAGCCTAATTTAGGTGGTCACtatgctaaaatgtcaaaatttt
agtacatgtgtactataattcaaaaatcatcaaaaaaccttttagtactc
atatatgtcttggATTTTAGTACAGACCTCCCCCCCTGCTTAAGCATCAG
TGATGATCAAAGTTATCCCTGTCTAAAGACAAAATGTTGAGAACACACAT
CAGACTGAGATGCTAGATTTGCCAAATATATTTTGTCATCTATTTCTTGC
ATCACCTCCACAGATCTCTGACAAACTGGTGATTACTTCCGTTTCCCTTT
TGAAACTTACGGACTGAATAATGAAGGTGtatcaggccatattttagaaa
gataAGGCAGTGTCCGTTGGTGGCCCTAAAGGTcctttttccagtgtttt
ttcactaaaaaggctgtttataccaatattttagtaatttcaaaaTGAGC
AACGTCTGATAACAGGCATGAAAAATGGTCTGTGTGTAAAGAAGCATCAG
TGATGATCAAAGTTATCCCTGTCATAAGAGAAGTGTTGAGAACGCACGTC
AGACTGAGATGCTAGATTTCCAAATTATGTTAACATAAGATCTCTGACAA
ACTGGTGGCTAACTCTGTTTCCCTTTTGAAACTTACAAACTGAATAATGA
AGGTGTATAAAGAAGCATCAGTGATGATCAAAGTTATCCCTGTCATAAGA
CTAAGTGTTGAGAACGCACGTCAGACTGAGATGCTAGATTTCCAAATTNT
AAAGAAGCATCAGTGATGATCAAAGTTATCCCTGTCATAAGACTAAGTGT
TGAGAACGCACGTCAGACTGAGATGCTAGATTTCCAAATTATGTTAAGAG
TATGGCTTTGAAAAAAGCTCAACCCAGAGTTTATCATCGTTCTCAAAATT
GTATGGAGCTAGATGATATACTGACATTTCTGTCTCTTTTGAAACTGACA
AATTGGATGCGGAGCATCAGTGATGATCAAAGTTATCCCTGTCATAaaac
aaaatgttgaaaacgCACGTCAGACTGAGATGCTTACATTCAAATGCATA
GAATGAAATTCTGTTTGTTCAtccatttgtctttttttcttttttccttt
tctttttttgaacttGACAAACTAGTGATTATTTCTGATCCCTTTCTGAA
ACCTACAAATTGAATGATGAAAGTTTCAGAGGCTGCTTATGAAGTTTGTT
CAAAAGTTTCCCAATactttttcatacaaaaatcaaagaaactGTTTGTA
TCCActcaataaataaattttctgcTTTGCAGGTCTTATTCTTGCGTGGA
ATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCTGATTTATACTTCTA
CCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGCTGCTGCTCTTGCTG
CTGCCAAACCAGAAGAAACTTATCCACAGACGACCTCATCTGACTGGGTT
TCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGCACTGACTGGGGAGA
ACAACCAGCAACAACCACTACTGATGTAAGTGAAGCTACTTTTCNGCACC
AGCAGCTACCGAGCAAGTTGGTGGAAGCACTGACTGGGGAGAACAACCAG
CAACAACCACTACTGATGTAAGTGAAGCTACTTTTCCTTAGGTCTAAGGG
CCAGTATCCACTTGTGTGCTCTGTGATTGCACCGTTTGGCTTTAATTCTT
TTTTGTCAGAATTACATCATAGAATGAAGTGGTGTTAAAAGTCGAtggaa
ttgttttgtttttcttttgaccaatagagtggaagctttgctcaaaAAAT
TGACTGTTAACTAGACTTTGAAATTATTCTGGGGGACAATTCTCAAAACA
TTTTGTTTGCGTTTTAAGACANTTAACTAGACTTTGAAATTATTCTGGGG
GACAATTCTCAAAACATTTTGTTTGCGTTTTAAGACATGATTCTTTCTAT
TACATTTTAGTGGGCTTCAGAACCAGTCACTGGAAAAGTTGAAGGATTTT
CTGCAGTTAAAGAAGACGATTGGGGAGCCTCCAACTATAAATCAGCTGGA
TGGGAAGCTGATACTACCAACACTACTACCACAGCTGACTGGGGTGCTTC
GACCACTGAAGGAGATTGGGCGTGATTTTGATTCCATGAAAAGTCTGTAT
TGTCGTTCATTTTTCGAAATACAAGAAATCGAAAAAACCGAAACCATCTT
TATCTGATTACTTTAATattcttacacgttttttttttttggacctaccc
cggtgggctgtaggtcctataaattaacctctgttcgttcgttcgtccgt
tcgttactagcttttctcgggattg

Coding sequence (CDS) from alignment at scaffold_100:76504..85628+

>TCONS_00045641 ID=TCONS_00045641|Name=TCONS_00045641|organism=Clytia hemisphaerica|type=CDS|length=3804bp|location=Sequence derived from alignment at scaffold_100:76504..85628+ (Clytia hemisphaerica)
ATGTCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGACGTCACTAA
ATTTCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTGACCGTCACT
TAGAAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCATATTATTAAC
TTGAGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGTCATTGCAGG
AATCGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGACCTTATGGAA
CAAGAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTACTCCAATCGCT
GGACGTTTCACACCAGGAACATTCACCAATCAAATCCAGAAAGCTTTCCG
TGAACCACGACTTTTGGTTGTGACAGATCCCCAATTTGACCATCAATCCA
TCACTGAATCATCTTATGTCAACATTCCAGTCATTGCGCTTTGCAACACT
GACTCACCTTCACGATTTGTTGATATTGCTATCCCATGTAACAACCGTGG
TGTGCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGAGAGGTCTTAT
TCTTGCGTGGAATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCTGAT
TTATACTTCTACCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGCTGC
TGCTCTTGCTGCTGCCAAACCAGAAGAAACTTATCCACAGACGACCTCAT
CTGACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGCACT
GACTGGGGAGAACAACCAGCAACAACCACTACTGATTGGGCTTCAGAACC
AGTCACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATTGGG
GAGCCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAACACT
ACTACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGCGTG
AATGTCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGACGTCACTA
AATTTCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTGACCGTCAC
TTAGAAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCATATTATTAA
CTTGAGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGTCATTGCAG
GAATCGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGACCTTATGGA
ACAAGAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTACTCCAATCGC
TGGACGTTTCACACCAGGAACATTCACCAATCAAATCCAGAAAGCTTTCC
GTGAACCACGACTTTTGGTTGTGACAGATCCCCAATTTGACCATCAATCC
ATCACTGAATCATCTTATGTCAACATTCCAGTCATTGCGCTTTGCAACAC
TGACTCACCTTCACGATTTGTTGATATTGCTATCCCATGTAACAACCGTG
GTGTGCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGAGAGGTCTTA
TTCTTGCGTGGAATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCTGA
TTTATACTTCTACCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGCTG
CTGCTCTTGCTGCTGCCAAACCAGAAGAAACTTATCCACAGACGACCTCA
TCTGACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGCAC
TGACTGGGGAGAACAACCAGCAACAACCACTACTGATTGGGCTTCAGAAC
CAGTCACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATTGG
GGAGCCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAACAC
TACTACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGCGT
GAATGTCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGACGTCACT
AAATTTCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTGACCGTCA
CTTAGAAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCATATTATTA
ACTTGAGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGTCATTGCA
GGAATCGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGACCTTATGG
AACAAGAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTACTCCAATCG
CTGGACGTTTCACACCAGGAACATTCACCAATCAAATCCAGAAAGCTTTC
CGTGAACCACGACTTTTGGTTGTGACAGATCCCCAATTTGACCATCAATC
CATCACTGAATCATCTTATGTCAACATTCCAGTCATTGCGCTTTGCAACA
CTGACTCACCTTCACGATTTGTTGATATTGCTATCCCATGTAACAACCGT
GGTGTGCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGAGAGGTCTT
ATTCTTGCGTGGAATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCTG
ATTTATACTTCTACCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGCT
GCTGCTCTTGCTGCTGCCAAACCAGAAGAAACTTATCCACAGACGACCTC
ATCTGACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGCA
CTGACTGGGGAGAACAACCAGCAACAACCACTACTGATTGGGCTTCAGAA
CCAGTCACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATTG
GGGAGCCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAACA
CTACTACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGCG
TGAATGTCTGAGGGAATCGAAGCTCTCCAACTCAAAGAGGAAGACGTCAC
TAAATTTCTTGCTAGTGGTGCTCACTTGGGAGCTCAAAATGTTGACCGTC
ACTTAGAAAGTTATGTTTACAAAAGGAAAGCTGATGGTATCCATATTATT
AACTTGAGAAAGACATGGGAGAAACTTGTCCTTGCTGCTCGCGTCATTGC
AGGAATCGAAAATCCAGCTGATGTCTGTGTCCTTTCATCAAGACCTTATG
GAACAAGAGCTGTTTTGAAATTTGCTCACCATACTGGAGCTACTCCAATC
GCTGGACGTTTCACACCAGGAACATTCACCAATCAAATCCAGAAAGCTTT
CCGTGAACCACGACTTTTGGTTGTGACAGATCCCCAATTTGACCATCAAT
CCATCACTGAATCATCTTATGTCAACATTCCAGTCATTGCGCTTTGCAAC
ACTGACTCACCTTCACGATTTGTTGATATTGCTATCCCATGTAACAACCG
TGGTGTGCAAGCTATTGGCACCATGTGGTGGATGCTTGCAAGAGAGGTCT
TATTCTTGCGTGGAATCATCTCTCGCAAAACTCCTTGGGACGTTATGCCT
GATTTATACTTCTACCGTGAACCAGAAGATATTGAAAAGGAAGAACAAGC
TGCTGCTCTTGCTGCTGCCAAACCAGAAGAAACTTATCCACAGACGACCT
CATCTGACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTTGGTGGAAGC
ACTGACTGGGGAGAACAACCAGCAACAACCACTACTGATTGGGCTTCAGA
ACCAGTCACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATT
GGGGAGCCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAAC
ACTACTACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGC
GTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029185XLOC_029185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045641-exon-scaffold_100-1491911889:76504..76563TCONS_00045641-exon-scaffold_100-1491911889:76504..76563Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1510915933:76504..76563TCONS_00045641-exon-scaffold_100-1510915933:76504..76563Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1575043694:76504..76563TCONS_00045641-exon-scaffold_100-1575043694:76504..76563Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1491911889:76676..76964TCONS_00045641-exon-scaffold_100-1491911889:76676..76964Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1510915933:76676..76964TCONS_00045641-exon-scaffold_100-1510915933:76676..76964Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1575043694:76676..76964TCONS_00045641-exon-scaffold_100-1575043694:76676..76964Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1491911889:77716..78006TCONS_00045641-exon-scaffold_100-1491911889:77716..78006Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1510915933:77716..78006TCONS_00045641-exon-scaffold_100-1510915933:77716..78006Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1575043694:77716..78006TCONS_00045641-exon-scaffold_100-1575043694:77716..78006Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1491911889:84586..84828TCONS_00045641-exon-scaffold_100-1491911889:84586..84828Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1510915933:84586..84828TCONS_00045641-exon-scaffold_100-1510915933:84586..84828Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1575043694:84586..84828TCONS_00045641-exon-scaffold_100-1575043694:84586..84828Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1491911889:85264..85628TCONS_00045641-exon-scaffold_100-1491911889:85264..85628Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1510915933:85264..85628TCONS_00045641-exon-scaffold_100-1510915933:85264..85628Clytia hemisphaericaexon
TCONS_00045641-exon-scaffold_100-1575043694:85264..85628TCONS_00045641-exon-scaffold_100-1575043694:85264..85628Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045641-proteinTCONS_00045641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:76504..85628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3637.2	3700.71	3893.25	3996.28	2397.89	2012.99	2936.26	3174.26	4950.94	4831.88	4806.68	6322.66	7036.08	7173.28	6799.69	7388.54	7219.53	7621	2917.82	3426.25	6409.74	6370.55	4783.18	4720.28	4571.05	4832.22	5394.2	5748.09	3962.2	4151.38
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR03228140S_SA_C
IPR005707Ribosomal_S2_euk/arc
IPR018130Ribosomal_S2_CS
IPR027498Ribosomal_S2_euk
IPR023591Ribosomal_S2_flav_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00045641 vs. Swiss-Prot (Human)
Match: RSSA (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 347.821 bits (891), Expect = 3.244e-117
Identity = 185/298 (62.08%), Postives = 216/298 (72.48%), Query Frame = 2 
Query:   98 MSEGIEALQLKEEDVTKFLASGAHLGAQNVDRHLESYVYKRKADGIHIINLRKTWEKLVLAARVIAGIENPADVCVLSSRPYGTRAVLKFAHHTGATPIAGRFTPGTFTNQIQKAFREPRLLVVTDPQFDHQSITESSYVNIPVIALCNTDSPSRFVDIAIPCNNRGVQAIGTMWWMLAREVLFLRGIISRKTPWDVMPDLYFYREPEDIXXXXXXXXXXXXXXXX------------TYPQTTSSDW---VSAPAATEQVGGSTDWGEQPATTTTDWASEPVTGKVEGFSAVKEDDW 946
            MS  ++ LQ+KEEDV KFLA+G HLG  N+D  +E Y+YKRK+DGI+IINL++TWEKL+LAAR I  IENPADV V+SSR  G RAVLKFA  TGATPIAGRFTPGTFTNQIQ AFREPRLLVVTDP+ DHQ +TE+SYVN+P IALCNTDSP R+VDIAIPCNN+G  ++G MWWMLAREVL +RG ISR+ PW+VMPDLYFYR+PE+IEKEEQAAA  A   EE            T  Q   +DW   V  P+   Q   + DW  QPA  T DW++ P     E   A    DW
Sbjct:    1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPA--TEDWSAAPTAQATEWVGATT--DW 294
The following BLAST results are available for this feature:
BLAST of TCONS_00045641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSSA3.244e-11762.0840S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
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