TCONS_00045624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045624
Unique NameTCONS_00045624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045624 ID=TCONS_00045624|Name=TCONS_00045624|organism=Clytia hemisphaerica|type=transcript|length=720bp
NCTGCCTTTTTGTGTGAAGTGTATACCACATTCTTCACACTTGAAAGGTT
TTTCTCCAGTATGAGTTTTGAAATGTTCTGTCAAGTTCTTTTTTTGGGTA
AAGagtttaccacattcttcacacTTAAAAGGCTTTCCACCTAAATGAGT
TCTCAAATGTGCTTTCAAGTTGCTATTTTGAGTAAACTgcttaccacatt
cttcacAATTTAGATTATTAATTACATGATGTTTTTGAACGAAATGTTGA
CCAAGGAACTCCTTTGATGTATAACAAGCACCACAGTCATTacactcaaa
ataattattgGAATTATCGGCACCTTCTTTTATTCGTTCCTTTTCGCTTT
CCACAATCGAACTCTCGATTTCTGTTAAATAATCAGTATTTGACGATTCT
TCTGCAGCaaaggttgaaatttcatcaaattcaattttgataTCAATGCA
CGAATCAATTTGCAGACTTGCTGTCGTAGCATTACCATCAATACTAACAA
AATCATTATCCTTCTCCTCGATTTTGACTTTCACGGTGTCTAACTCATTC
CCAGCGATATTTCTATTCTCAATATTGTTTACATTCtcaatttcttcttc
aaatttgAAGCAAATGGATTCAATATTTTCGTGAAAACATAATATTCGTT
CTTCTTGTTCAACTTTAATTATTTGTTCCATATCAATAAAAGGTTctcat
ttgtttgttttaaatttttc
Run BLAST on NCBI

transcript from alignment at scaffold_10:283238..288101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045624 ID=TCONS_00045624|Name=TCONS_00045624|organism=Clytia hemisphaerica|type=transcript|length=4864bp|location=Sequence derived from alignment at scaffold_10:283238..288101- (Clytia hemisphaerica)
NCTGCCTTTTTGTGTGAAGTGTATACCACATTCTTCACACTTGAAAGGTT
TTTCTCCAGTATGAGTTTTGAAATGTTCTGTCAAGTTCTTTTTTTGGGTA
AAGAGTTTACCACATTCTTCACACTTAAAAGGCTTTCCACCTAAATGAGT
TCTCAAATGTGCTTTCAAGTTGCTATTTTGAGTAAACTGCTTACCACATT
CTTCACATTGAAAACCCATGACTTCACCATGTACTTTTTGTATATGCTCA
TTAAGGAACTCCTTTTTGTCGAAACAGAAACTACACTTTATGCATTTGAA
ATAATTTTCATTTTTCCTTTCTTCTTCATCTATAACAATTGAACTTGCCA
TTTCCATTAAATTTTCAGTATTTGACAAGTCTTCTTCCGTAGATATTGAC
AGATTATCGGAGGTTTCCATGGTTAAAACTTCATTATCTTTAGAAATTAA
ATCAGGGACCAAATCAATCTGCAGACTGGTCATATCTGTTTTTTCCATAT
CCAAAGTGGTCCTAACAAGATCATTGAAATCCAAAGTCTGGTCTTCAAAA
TCAAGTTCTCTCCCATTGATTGGTTCATTCCATGTAAAACTGAAATTATT
TTCCATGTTACAGTCTGTGACTTCATTTTCAATCTCCATTGTCAAGACTG
GGAGTTTTTATCTTGATTTTTTTTCTAAAAGGAAAATGAAAAAAATGTTA
AGAAGATAACTTTACTTCTTTATGAAGTAGATATTGATAAAGTAGATATC
TTTCCAACTCGCAAAATAATTTAAACGAAGCTATGTTTTTCACGAGGCTT
GATTGAAATTTTAGTATCGCAAATGCCTGGGATTTGTAAGGTGCATTGTC
CATTATATTTTATTAGAGAAAGGAAGAAAATACATTGTAATGAATTATTT
GGAAAAAAGTGTTCAAAAACATATTGCAGAACAATTGCTATTTAGAAAAA
TCCTGAGCAAACAAGCAATTGTTACCTAAGATTATGTTGTCATTTTTTTA
TTGTCATTATGACATATCAATATCAAAAGCTAAAGAACCAAGTATTCAAG
AATTGTTTGTAAAAAAGTCCTAGACGAAAAATATGAAGATTAAAATATTC
TTCTGAAAAAGTGAAATGTTGAAAATAACATATTACAAATCTCCGTCCAC
ATACACCAGTTTACATAGTAACTATAAATGTGTATATTTATCTCAAAAAC
AAAAGCAGAAACATTTTCCACATTTTCCACATTCGGATGGATCCAAACCA
GTATGAGTTCGGTCATGCAAGGCTAATAAAAACATNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNGGTCGGTAGCATTTTTCAGGTGGGGGTTAC
CCTATGCAGGTGGGGGTGACTTTATTCAGGTGGGGGTTGGAGGGGTGCTG
CCCACTATGCCAAAAACCCCTATTTTTGGGCATTTTTTGGGCCAAAATTG
GCCTAAATTATTTTTTTCGAAAATCAGACTTTTTGGTAATAACCATTTTG
CACCTTTGTATCAAAAATCACAAAATTTTCCTATGATTCAATCCCGAGAA
AANTAAATTTTTTTTTTCGAAAATCAGACTTTTTGGTAATAACCATTTTG
CACCTTTGTATCAAAAATCACAAAATTTTCCTATGATTCAATCCCGAGAA
AAGTTGGTAACAGATGAACGGACGAACGGACAAACACAGGTTAAAAGTTA
TAAACTAAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAGTT
TTATTCCTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTTGC
ATCTAAACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAAGT
TTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTCTTGACATTCAA
ATTGTTTCTCTCCTGTATGAGTTCTCAAATGTCTTTTCAAGGTACCCTTT
TGCATAAAGCATTTACCACACTCTTGACATTCAAATTGTTTTTCTCCTGT
GTGAGTTCTCAAATGTTTTTTCAAGTTGCTATTTTGAGTAAACTGCTTAC
CACATTCTTCACACTTAAAAGGTTTTTCTCCAGTATGAGTTTTGAAATGT
TCTGTCAAGTTCTTTTTTTGGGTGAAGAGTTTACCACATTCTTCACACTT
GAAAGGTTTTCCACCTGAATGAGTTCTCAAATGTTTTTTCAAGTTGCCTT
TTTGTGTGAAGTGTATACCACATTCTTGACACTTGAAAGGTTTTTCTCCA
GTATGAGTTTTGAAATGTTCTGTCAAGTTATATTTTTGGGTGAAGAGTTT
ACCACATTCTTCACACTTAAAAGGCTTTCCACCTGAATGAGTTCTCAAAT
GTGTTTTCAAGTTGCTATTTTGAGTAAACTGCTTACCACATTCTTCACAC
TTAAAAGGTTTTTCTCCAGTATGAGTTCTCAAATGTTTTTTCAAGTTGCC
TTTTTGTGTGAAATGTATACCACATTCTTCACACTTGAAAGGTTTTTCTC
CAGTATGAGTTTTGAAATGTTCTTTCAAGTTATATTTTTGGGTGAAGAGT
TTACCACATTCTTCACACTTAAAAGGTTTTTCTCCAGTATGAGTTTTGAA
ATGTTCTTTCAAGTTATATTTTTGCGTAAAGTGTTTACCACAAACAGCAC
AATTTAGATTATTAATTACATGATGTTTTTGAACGAAATGTTGACCAAGG
AACTCCTTTGATGTATAACAAGCACCACAGTCATTACACTCAAAATAATT
ATTGGAATTATCGGCACCTTCTTTTATTCGTTCCTTTTCGCTTTCCACAA
TCGAACTCTCGATTTCTGTTAAATAATCAGTATTTGACGATTCTTCTGCA
GCAAAGGTTGAAATTTCATCAAATTCAATTTTGATATCAATGCACGAATC
AATTTGCAGACTTGCTGTCGTAGCATTACCATCAATACTAACAAAATCAT
TATCCTTCTCCTCGATTTTGACTTTCACGGTGTCTAACTCATTCCCAGCG
ATATTTCTATTCTCAATATTGTTTACATTCTCAATTTCTTCTTCAAATTT
GAAGCAAATGGATTCAATATTTTCGTGAAAACATAATATTCGTTCTTCTT
GTTCAACTTTAATTATTTGTTCCATATCAATAAAAGGTTCTCATTTGTTT
GTTTTAAATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029170XLOC_029170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045624-exon-scaffold_10-1575043694:287896..288101TCONS_00045624-exon-scaffold_10-1575043694:287896..288101Clytia hemisphaericaexon
TCONS_00045624-exon-scaffold_10-1575043694:283238..283751TCONS_00045624-exon-scaffold_10-1575043694:283238..283751Clytia hemisphaericaexon
TCONS_00045624-exon-scaffold_10-1510915933:287896..288101TCONS_00045624-exon-scaffold_10-1510915933:287896..288101Clytia hemisphaericaexon
TCONS_00045624-exon-scaffold_10-1510915933:283238..283751TCONS_00045624-exon-scaffold_10-1510915933:283238..283751Clytia hemisphaericaexon
TCONS_00045624-exon-scaffold_10-1491911889:287896..288101TCONS_00045624-exon-scaffold_10-1491911889:287896..288101Clytia hemisphaericaexon
TCONS_00045624-exon-scaffold_10-1491911889:283238..283751TCONS_00045624-exon-scaffold_10-1491911889:283238..283751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:283238..288101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39769	5.0863	0.790608	0.858766	0.347212	0.131489	0.413768	0	0	0.847447	0.797347	0	0.17732	0	0.0915897	0.0128253	0.511352	0.282836	0	0.134339	0.494526	0.0742423	2.28977	2.68211	0.800764	1.06351	0.140387	0.44498	1.3057	1.64067
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00045624 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.717e-25
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = -1 
Query:    7 FECNDCGACYTSKEFLGQHFVQKHHVINN-LNCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQK 300
            FECN+CG  ++ KE L  H  QK H       C++CGK F Q SNL  H RTH G KPF C+ECGK F+ K NLTEH K H GEKPFKC ECG  F QK
Sbjct:   72 FECNECGKSFSQKENLLTH--QKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQK 168

HSP 2 Score: 90.5077 bits (223), Expect = 2.277e-21
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = -1 
Query:    7 FECNDCGACYTSKEFLGQHFVQKHHVINNLNCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQK 300
            +ECN+CG  ++ +  L  H V+ H       C  CGK F+Q+S+L  H+R+H G KP+ C ECGK F+Q   L  H + HTG+KP++C ECG  F+QK
Sbjct:  184 YECNECGKAFSQRTSLIVH-VRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQK 280

HSP 3 Score: 88.9669 bits (219), Expect = 9.619e-21
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = -1 
Query:   10 FECNDCGACYTSKEFLGQHFVQKHHVINNLNCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQ 300
            F+C++CG  +  K++L +H    H       C ECGK F+Q ++L  H+R H G KP++C  CGK F+Q  +LT H ++HTGEKP+ C ECG  F+Q
Sbjct:  156 FKCSECGTAFGQKKYLIKH-QNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQ 251

HSP 4 Score: 82.0333 bits (201), Expect = 1.984e-18
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = -1 
Query:    7 NYFECNDCGACYTSKEFLGQHFVQKHHVINNLNCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQK 306
            N F C  CG  ++ K  L +H    H       C ECGK F+Q   +  H  TH G K F+C ECGK F+QK+NL  H K HTGEKPF+C++CG  F QK
Sbjct:   14 NPFACKVCGKVFSHKSNLTEH-EHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQK 112
The following BLAST results are available for this feature:
BLAST of TCONS_00045624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OZF2.717e-2557.58Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 ... [more]
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