TCONS_00045616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045616
Unique NameTCONS_00045616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045616 ID=TCONS_00045616|Name=TCONS_00045616|organism=Clytia hemisphaerica|type=transcript|length=166bp
CAACAGCCTCCAAGGATATGTAATATGATTGCGATAAGGAAATTAAAAAG
TCACCGAAGGTAACACTGAAACCCGGGGAACTGTTGTTGAAACGAAggaa
aaacctcaaaatatcCAAGTGTGGAGCCTGCCCAAACAAGATAAACGAAA
AGCCTTTAGAATTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_10:160241..160768-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045616 ID=TCONS_00045616|Name=TCONS_00045616|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_10:160241..160768- (Clytia hemisphaerica)
CAACAGCCTCCAAGGATATGTAATATGATTGCGATAAGGTGATTTACTTT
TCATGATCGACACATCATCTGAAATGAAAGTTGAACATTAGACTCTTTCC
TTAAATCAAAGTGTGGTACGCATATCTTTAAGTATTAGACATCGATTGGT
TACAAGGATATCATTCGTGACACAAAGACGCGAATTTCAGGACTCTAATT
AATTCACGTCGTTTCTTACCTTTCTTTTCCAAAACTTGCGTTTTTGTAGT
GTCGTAATCAATTTAAACTACACAAATTACCATGGCATGGTAGTAAGGTA
GCAAAACAAATTTATAAATTTACTGCTCCTCGTTTTCTTCAGGAAATTAA
AAAGTCACCAAAGGTAACACTGAAACCCGANTCCTCCTCGTTTTCTTCAG
GAAATTAAAAAGTCACCGAAGGTAACACTGAAACCCGGGGAACTGTTGTT
GAAACGAAGGAAAAACCTCAAAATATCCAAGTGTGGAGCCTGCCCAAACA
AGATAAACGAAAAGCCTTTAGAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029165XLOC_029165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045616-exon-scaffold_10-1575043694:160731..160768TCONS_00045616-exon-scaffold_10-1575043694:160731..160768Clytia hemisphaericaexon
TCONS_00045616-exon-scaffold_10-1575043694:160241..160368TCONS_00045616-exon-scaffold_10-1575043694:160241..160368Clytia hemisphaericaexon
TCONS_00045616-exon-scaffold_10-1510915933:160731..160768TCONS_00045616-exon-scaffold_10-1510915933:160731..160768Clytia hemisphaericaexon
TCONS_00045616-exon-scaffold_10-1510915933:160241..160368TCONS_00045616-exon-scaffold_10-1510915933:160241..160368Clytia hemisphaericaexon
TCONS_00045616-exon-scaffold_10-1491911889:160731..160768TCONS_00045616-exon-scaffold_10-1491911889:160731..160768Clytia hemisphaericaexon
TCONS_00045616-exon-scaffold_10-1491911889:160241..160368TCONS_00045616-exon-scaffold_10-1491911889:160241..160368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:160241..160768 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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