TCONS_00045610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045610
Unique NameTCONS_00045610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045610 ID=TCONS_00045610|Name=TCONS_00045610|organism=Clytia hemisphaerica|type=transcript|length=476bp
NNCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCAATCCTACCTTTG
TCGACAAATTTGAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGGACAA
GAAGAGAGCAGTATTTTTACTCAAATGGGACAACGAAATCGAATCGAGTT
TGGACGAGAAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGGAAAACATG
TCAGAATTCTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCT
CTTGAAGGATCAAACGGAGTCATTTAAACGGATGGAGTTGTTCTGTACAC
TACAATGTGTGCCCATGTTACATCCAGTGAAAGATCTCACGTCAATGTAT
GTCCACATGTTGAAAAACCCAAAGCAAGAGAAACGTGAAGTCAAAGAAAC
GACCGCAATGCATGATACTTTGTTGGAAGCTGCTAGAGATGCAAGGTTGA
TATTAGAAAACAAAGAACCGAAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00045610-protein

>TCONS_00045610-protein ID=TCONS_00045610-protein|Name=TCONS_00045610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
LCIKGKTLNWNPILPLSTNLKKMTSKKASGKDKKRAVFLLKWDNEIESSL
DEKDFYPALCVLKENMSEFYYPNAKVISRFMNLLKDQTESFKRMELFCTL
QCVPMLHPVKDLTSMYVHMLKNPKQEKREVKETTAMHDTLLEAARDARLI
LENKEPK
Run BLAST on NCBI

transcript from alignment at scaffold_10:77059..80981-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045610 ID=TCONS_00045610|Name=TCONS_00045610|organism=Clytia hemisphaerica|type=transcript|length=3923bp|location=Sequence derived from alignment at scaffold_10:77059..80981- (Clytia hemisphaerica)
NNCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCAATCCTACCTTTG
TCGACAAATTTGGTAAGCTTTTAAGTTTTGGTTTAAAGCAAAGGTTTTTT
CGGTAGTCGAAAAGTATTTTCATTGATCATGTCGTGATTCTGTGGGTGTT
GAGTAAATTGTTTATCAGTTTTCTAGTCAGTAAATTGAGTTTCGGGTAAA
TTCTTTAGCTGGTCTATTAAATGGTAAATAATCCACCCAGCGCCCACGGA
ATCATGACACGATACACTTCCATTTATTTAACTTGAGCGACCTTAGTGCA
GTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGTTGGTTCAACCCCAGC
CGGGTCATACCAAAATGGTACTTGATGCCTAATTGCTTGATGCTCAGCAA
TTTAGAGAAGGGTTAAGTGTAAGTGGAGAAATCTAGGCAGAAACAGTGGC
GCCCTCCCCTTCCTTCGGGTAGATAGCTATCGAAAGAGGAGCCTTCGGGT
CTCCTCCGACTGCGGTCGTTGATTTACTAAGGCTATTTAACTTGAAAAAA
TTCCGTCTTTAAATCTTTACCTGATAGTAGGGGGAAATTTGTAAAATCGC
TCGATTTTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGG
TAGGGGAATCAAAATAACTTGGGTGCCAATTTTTTTTCGGACACTTTGGA
GTGATTTTCGGACAAATACGACGGTCTCAGGCAAAAATCATAGGTCGAAA
ATTAATGAGAATTTTAGCTTGAGAAAACGGAGACCTGTTGTATATTTTTG
GAAAGCTCTCAAAAAATTAAGATTAGTGATATATTGCGAGTATAGGTGAT
TTCTTTACCTAACTCGAGATATTAATCCTTAAAAACAGTGTTTTTCATTG
TTTTTCAGCCTGTTTCTGCCAGAAACAGCTGTTTTGTCCAGTTTTTGTGC
TTTCGGAAGCTCAATATCTCGAGTTAGGTACTGAAATCACCTATACTCGC
AATATATCACTAATCTTAATTTTTTGAGAGCTTTCCAAAAATATACAACA
GGTCTCCGTTTTCTCAAGCTAAAATTCTCATTAATTTTCGACCTATGATT
TTTGCCTGAGACCGTCGTATTTGTCCAAAAGTCACACCAAAGTGTCAGAA
AAAAAATTGGCACCCAATTTATTTTTATTCCCCTACCCCTTAGCTTTCCA
AAAATGTATAACAAGTGCTTAGACTAAAAAAATCGAGCGACCTCAAAAAA
ACGAACAAATTTCCCCCTACTATGAGGCTAAAACATCCTGCTTCAACAAT
GTTCGTCCAAATAAAGCTCGTAATGTTTATTTGTACAATATCTACAATAT
TCTTTTGTAGAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGGTATCTA
TGCTTTTTGTTTATAATTCGTGTTATTCATATTAAACACAACACACGTAG
GAAAACGTTCTCAGAAAAAAATTTACACTTATATCTTAATTTACCGAAAA
TTTTTGTGATTTTAAGGAAGGCTCTGAACCACAATCTCCCTCGAAATATA
TTGAGATTTTAGTGTATATTAACGTTTTTCAGAATTTAAAGTTCGGGCGA
GAATTGCTATTTTAGCACTTCCACTTTCTTCCATTGAATATTTCGATTTT
AGAGGGGTTTGGTGGCTTCTAGACTATATTCCAAGCCTCATTCGAGCAAA
ATTGAGCTTTTAAATCCTGAGATCCTAAGGTCCGAAGTCTTAAGTCTCGT
GTTAAAACTCAGAGTTAAAACTCTACTTTCCAACTGTAGTTTAAGGCGCT
TAAAAATCAATTGTGGTGTTCAAAGTTACACCGGGAACTCCCCTTTGTCT
CAAATATTTAGTAGAGGATTGCAGGTTTGCACCTTANACACTTGTATCTT
AATTTACCGAAAATTTTTGTGATTTTTAGGAAGGCTCTGAACCAGGTTTG
CACCTTTGAAGTACCAGCAACCACGATTTTGTACATTTCGTAGCTGAACT
CTACCCTTAGTACTACTGCCTGGACTCCCTTTATTATGACCATACAATCT
TGTAAAATCATTCTGTATTTCGACTCCTATTTTTCAGGACAAGAAGAGAG
CAGTATTTTTACTCAAATGGGACAACGAAATCGAATCGAGTTTGGACGAG
AAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGGAAAACATGTCAGAATT
CTACTACCCGAATGCAAAAGTCATTTCANTGTTCTTAAGGAAAACATGTC
AGAATTCTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCT
TGAAGGTAGGTGATAGCTGCTGTTTTCGCCCGTGTCAGGAAAATAATATA
TGTGCAGATTTGACAGCCGGTAATGACAGTAGTTAGAGAGAAAAATTGCC
GCTGTAAAGTCTCGAAGACGGCCAACCTTATAGCCTATCTCTATCCCAAC
ACGCGATTTTTTGATCACACGGTGTCGAGGAAAAAGCCGTGTTCGTCTGG
TACAGGCAACCAACCTTACCGCCTGCTAACTCGCTTCGAAAGAAAAACCT
GTGTTCGAGAACTTTCAAAAGTTTCGGGGAAGTTTGGAACTATCGAGAAT
AGTCAGATTCGGATAAAATTTTGCACACGTGCTTTTAGGGTTAATTCATA
CCTGCTATTTTTCTATTTTCAAAACTTTTCTGGTAAGGATTATTTCACAA
TAGCTACCATTAAAGCATGAACACGATATCATTTTCATTATCCAGGATCA
AACGGAGTCATTTAAACGGATGGAGTTGTTCTGTACACTACAATGTGTGC
CCATGTTACATCCAGTGAAAGATCTCACGTCAATGTATGTCCACATGTTG
AAAAACCCAAAGCAAGAGAAACGTGAAGTCAAAGAAACGACCGCAATGCA
TGATACTTTGTTGGAAGCTGCTAGGTGAGCTTAGTTTAAAAAACTTTGCT
TTTGTTTATTCTGCTTTTTCAGCAAAAGAGGTTTGCCTTATTTCTATATC
ATAAAAAAGGTCTGTACTAATAATCTCATGGCTTTGAGGGAAATTTGAGA
TAAATTTCCGGGAAAAAAAATTCAAAATTAGACCGAGGGTAATTTATCCC
GAATATGCGAGAGTTAGCGTGAGATTGAAATTCAATGAATTTAACTATTA
GTTTAACGTCAATCTAGCACCAAAGATCAAACATAGCCATAAACAATAAA
AAAGAAACTTTAAATGTAAAAGAAACTCTAAAAGTGAACGAATTTCCTCA
ATTAGGAAACTCTAGGTACCTTTACCAATTACACTTACCGAGCATTTGAA
TTTTATACGACAGGACGTTATAAAAAATCCAAAATATGAGAGATCTCAAA
TTAGCGGGAAATTACAAAACCTATGCGGGGAGATTACAAATTAACAGTAA
ACAAAAACGTTAGTTAGGTCAACGTTGCTCGTATTTGTCTTGTGCAAGTT
GGGAGGAGATGTAATTTGATTTTCCATTTTAAGTGGTAGTTTTATCTAAA
TTCTTCCCCATTTATCTACTACGTATCCCGATCTACTTTTAGTGATTGCA
GGTCACCCAAGTGCATTTATAGATCAGGTTGAAAGAGTTAAATATCATTT
TTAGCTACCGCATCCCGCTGATTGTCATAAGCGAGTTTTTGTATTGAGTG
ACGGGGGAGTGGCTGAAACGATAAGAAACAACTCTCAGTTTTGACCAAGA
AAGTCGAGGATAGTAAAAGTGCTGATTTACCATTGTCCTCAGTCAATCAA
AAGCCAGCCGTCTCCGTCGCTGTAAGACGTATATGCATGAACTTGCTATT
CAAACTTTATTTTGGTTTTACCCTGTTTTGAACTTTTTTTCGTTAATTTT
TCTTAATTTTCTCTTTTTTGTATATTTTTGTAGAGATGCAAGGTTGATAT
TAGAAAACAAAGAACCGAAGTAA

Coding sequence (CDS) from alignment at scaffold_10:77059..80981-

>TCONS_00045610 ID=TCONS_00045610|Name=TCONS_00045610|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_10:77059..80981- (Clytia hemisphaerica)
AGATGCAAGGTTGATATTAGAAAACAAAGAACCGAAGTAAGATCAAACGG
AGTCATTTAAACGGATGGAGTTGTTCTGTACACTACAATGTGTGCCCATG
TTACATCCAGTGAAAGATCTCACGTCAATGTATGTCCACATGTTGAAAAA
CCCAAAGCAAGAGAAACGTGAAGTCAAAGAAACGACCGCAATGCATGATA
CTTTGTTGGAAGCTGCTAGATGTCAGAATTCTACTATCCGAATGCGAAAG
TCATTTCAAGGTTTATGAACCTCTTGAAGGACAAGAAGAGAGCAGTATTT
TTACTCAAATGGGACAACGAAATCGAATCGAGTTTGGACGAGAAAGATTT
CTACCCAGCTTTGTGTGTTCTTAAGGAAAACAAGAAGATGACATCAAAGA
AAGCTTCCGGAAAGCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCA
ATCCTACCTTTGTCGACAAATTTGAGATGCAAGGTTGATATTAGAAAACA
AAGAACCGAAGTAAGATCAAACGGAGTCATTTAAACGGATGGAGTTGTTC
TGTACACTACAATGTGTGCCCATGTTACATCCAGTGAAAGATCTCACGTC
AATGTATGTCCACATGTTGAAAAACCCAAAGCAAGAGAAACGTGAAGTCA
AAGAAACGACCGCAATGCATGATACTTTGTTGGAAGCTGCTAGATGTCAG
AATTCTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCTTG
AAGGACAAGAAGAGAGCAGTATTTTTACTCAAATGGGACAACGAAATCGA
ATCGAGTTTGGACGAGAAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGG
AAAACAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGCTTTGCATCAAA
GGAAAGACTCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTGAG
ATGCAAGGTTGATATTAGAAAACAAAGAACCGAAGTAAGATCAAACGGAG
TCATTTAAACGGATGGAGTTGTTCTGTACACTACAATGTGTGCCCATGTT
ACATCCAGTGAAAGATCTCACGTCAATGTATGTCCACATGTTGAAAAACC
CAAAGCAAGAGAAACGTGAAGTCAAAGAAACGACCGCAATGCATGATACT
TTGTTGGAAGCTGCTAGATGTCAGAATTCTACTATCCGAATGCGAAAGTC
ATTTCAAGGTTTATGAACCTCTTGAAGGACAAGAAGAGAGCAGTATTTTT
ACTCAAATGGGACAACGAAATCGAATCGAGTTTGGACGAGAAAGATTTCT
ACCCAGCTTTGTGTGTTCTTAAGGAAAACAAGAAGATGACATCAAAGAAA
GCTTCCGGAAAGCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCAAT
CCTACCTTTGTCGACAAATTTGAGATGCAAGGTTGATATTAGAAAACAAA
GAACCGAAGTAAGATCAAACGGAGTCATTTAAACGGATGGAGTTGTTCTG
TACACTACAATGTGTGCCCATGTTACATCCAGTGAAAGATCTCACGTCAA
TGTATGTCCACATGTTGAAAAACCCAAAGCAAGAGAAACGTGAAGTCAAA
GAAACGACCGCAATGCATGATACTTTGTTGGAAGCTGCTAGATGTCAGAA
TTCTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCTTGAA
GGACAAGAAGAGAGCAGTATTTTTACTCAAATGGGACAACGAAATCGAAT
CGAGTTTGGACGAGAAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGGAA
AACAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGCTTTGCATCAAAGG
AAAGACTCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTGAGAT
GCAAGGTTGATATTAGAAAACAAAGAACCGAAGTAAGATCAAACGGAGTC
ATTTAAACGGATGGAGTTGTTCTGTACACTACAATGTGTGCCCATGTTAC
ATCCAGTGAAAGATCTCACGTCAATGTATGTCCACATGTTGAAAAACCCA
AAGCAAGAGAAACGTGAAGTCAAAGAAACGACCGCAATGCATGATACTTT
GTTGGAAGCTGCTAGATGTCAGAATTCTACTATCCGAATGCGAAAGTCAT
TTCAAGGTTTATGAACCTCTTGAAGGACAAGAAGAGAGCAGTATTTTTAC
TCAAATGGGACAACGAAATCGAATCGAGTTTGGACGAGAAAGATTTCTAC
CCAGCTTTGTGTGTTCTTAAGGAAAACAAGAAGATGACATCAAAGAAAGC
TTCCGGAAAGCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCAATCC
TACCTTTGTCGACAAATTTGAGATGCAAGGTTGATATTAGAAAACAAAGA
ACCGAAGTAAGATCAAACGGAGTCATTTAAACGGATGGAGTTGTTCTGTA
CACTACAATGTGTGCCCATGTTACATCCAGTGAAAGATCTCACGTCAATG
TATGTCCACATGTTGAAAAACCCAAAGCAAGAGAAACGTGAAGTCAAAGA
AACGACCGCAATGCATGATACTTTGTTGGAAGCTGCTAGATGTCAGAATT
CTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCTTGAAGG
ACAAGAAGAGAGCAGTATTTTTACTCAAATGGGACAACGAAATCGAATCG
AGTTTGGACGAGAAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGGAAAA
CAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGCTTTGCATCAAAGGAA
AGACTCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029163XLOC_029163Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045610-proteinTCONS_00045610-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045610-exon-scaffold_10-1575043694:80920..80981TCONS_00045610-exon-scaffold_10-1575043694:80920..80981Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1575043694:79589..79621TCONS_00045610-exon-scaffold_10-1575043694:79589..79621Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1575043694:78793..78894TCONS_00045610-exon-scaffold_10-1575043694:78793..78894Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1575043694:78677..78736TCONS_00045610-exon-scaffold_10-1575043694:78677..78736Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1575043694:78058..78236TCONS_00045610-exon-scaffold_10-1575043694:78058..78236Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1575043694:77059..77098TCONS_00045610-exon-scaffold_10-1575043694:77059..77098Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:80920..80981TCONS_00045610-exon-scaffold_10-1510915933:80920..80981Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:79589..79621TCONS_00045610-exon-scaffold_10-1510915933:79589..79621Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:78793..78894TCONS_00045610-exon-scaffold_10-1510915933:78793..78894Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:78677..78736TCONS_00045610-exon-scaffold_10-1510915933:78677..78736Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:78058..78236TCONS_00045610-exon-scaffold_10-1510915933:78058..78236Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1510915933:77059..77098TCONS_00045610-exon-scaffold_10-1510915933:77059..77098Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:80920..80981TCONS_00045610-exon-scaffold_10-1491911889:80920..80981Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:79589..79621TCONS_00045610-exon-scaffold_10-1491911889:79589..79621Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:78793..78894TCONS_00045610-exon-scaffold_10-1491911889:78793..78894Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:78677..78736TCONS_00045610-exon-scaffold_10-1491911889:78677..78736Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:78058..78236TCONS_00045610-exon-scaffold_10-1491911889:78058..78236Clytia hemisphaericaexon
TCONS_00045610-exon-scaffold_10-1491911889:77059..77098TCONS_00045610-exon-scaffold_10-1491911889:77059..77098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:77059..80981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.077	11.4017	4.88533	2.35504	48.5847	39.9089	38.4998	51.9199	30.5591	28.8048	24.0298	24.6509	23.6655	27.5497	13.2417	10.7128	11.7364	15.059	4.87311	6.32287	13.8349	17.9744	15.2994	17.8204	47.6237	67.6571	4.5914	3.40283	9.63545	9.54902
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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