TCONS_00045601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045601
Unique NameTCONS_00045601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045601 ID=TCONS_00045601|Name=TCONS_00045601|organism=Clytia hemisphaerica|type=transcript|length=1129bp
GTTTTAAACCCATAGGAAAcctctgtaccaaatttcagtaaTATTTGATT
ATTTCAGGGTTTGGGCCGTTAGCTTATTCTACCATACTAGTTTACCTAGA
AAAGCTTACCGACAACCATTATGGTCATTATGAGAAAGATTCAAAAGTCG
AAACACAAAAgccaaccaaaattaaaaacaaaccaaacaaaaacTCTTAT
CAAGTTTGAATCATTTTGTGCGATGAATCATATATGTACTTTTTAAACTC
CAGTAAAACTTTAATAGGCTCTTTAGCCTCTCCTCCACTCTCATTAGCCT
GTTTACCTTTACCCTTTTTAGTGGTACTCAGCCTCTCTTTAGTAGAGTCA
GCTAATCCTTTAGGTATCCGGACTTTGATTTTACCGCTTTGACCAAAGCT
ACCTTCAATCGTTCCCTCGTCTCCAGAGCTTAGCTTGACTTTCATGTTCG
TAAATAAAGCTAAATTTGTTTCTTTCTTGAATAAAGATTTTACAATGACG
CTGTATTCATCAGCCATGCGTTCAACAGTCCCTTCTTTGCTCTTCCAttt
gaaaatcttcaatttcgGTAATTCTTCTTTCTGATAGTCTCTAGATAAAA
ATGGTAACACTATACGCCCGTAAAACGCTAGTCTGCACGTGTTCAAATTG
ATATCTGTATCCAGTCTAGATCCGATGACTAAGGAATCAGCCTGCCCAAT
GACCGGGTGATCAAACTCAATCATAACGTATTGAGTCTCTCGATCGTTGG
TATTCGCCAGTTTGGTTTGAGTTTTTTCGTTGAGTTCCTCTTGAAATTCA
TATTCGGTATCTGTGCTAAATTGTTCCTCATCTACATGATCATTGTCACT
AGGGGGTTTCCCGAAAAACTGTAATTTCCCCATGACAGTTTCATGGCCAA
CCGTGATATGAAATTTAGCTTTGTTCAAACATTTCCCTTTGAAGTAAGGT
ATTTTATGGACTTTGACGATACCTCCGTATAGGGTTGGTAGGAACCCCGG
TGAGCAGACCACGCCTCTTTCCAACTTCTTGGGATCGAACTGAGTGACAC
AGATACCAGCTCGGTCACCTTGCACAATACTTTTGACAGGTTTCCGAAAC
ATCTGCATGGACTTCACTTTCTTCGTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_10:114053..115242+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045601 ID=TCONS_00045601|Name=TCONS_00045601|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at scaffold_10:114053..115242+ (Clytia hemisphaerica)
GTTTTAAACCCATAGGAAAcctctgtaccaaatttcagtaaTATTTGATT
ATTTCAGGGTTTGGGCCGTTAGCTTATTCTACCATACTAGTTTACCTAGA
AAAGCTTACCGACAACCATTATGGTCATTATGAGAAAGATTCAAAAGTCG
AAACACAAAAgccaaccaaaattaaaaacaaaccaaacaaaaacTCTTAT
CAAGTTTGAATCATTTTGTGCGATGAATCATATATGTACTTTTTAAACTC
CAGTAAAACTTTAATAGGCTCTTTAGCCTCGCTTCCATNCATATATGTAC
TTTTTAAACTCCAGTAAAACTTTAATAGGCTCTTTAGCCTCTCCTCCACT
CTCATTAGCCTGTTTACCTTTACCCTTTTTAGTGGTACTCAGCCTCTCTT
TAGTAGAGTCAGCTAATCCTTTAGGTATCCGGACTTTGATTTTACCGCTT
TGACCAAAGCTACCTTCAATCGTTCCCTCGTCTCCAGAGCTTAGCTTGAC
TTTCATGTTCGTAAATAAAGCTAAATTTGTTTCTTTCTTGAATAAAGATT
TTACAATGACGCTGTATTCATCAGCCATGCGTTCAACAGTCCCTTCTTTG
CTCTTCCAtttgaaaatcttcaatttcgGTAATTCTTCTTTCTGATAGTC
TCTAGATAAAAATGGTAACACTATACGCCCGTAAAACGCTAGTCTGCACG
TGTTCAAATTGATATCTGTATCCAGTCTAGATCCGATGACTAAGGAATCA
GCCTGCCCAATGACCGGGTGATCAAACTCAATCATAACGTATTGAGTCTC
TCGATCGTTGGTATTCGCCAGTTTGGTTTGAGTTTTTTCGTTGAGTTCCT
CTTGAAATTCATATTCGGTATCTGTGCTAAATTGTTCCTCATCTACATGA
TCATTGTCACTAGGGGGTTTCCCGAAAAACTGTAATTTCCCCATGACAGT
TTCATGGCCAACCGTGATATGAAATTTAGCTTTGTTCAAACATTTCCCTT
TGAAGTAAGGTATTTTATGGACTTTGACGATACCTCCGTATAGGGTTGGT
AGGAACCCCGGTGAGCAGACCACGCCTCTTTCCAACTTCTTGGGATCGAA
CTGAGTGACACAGATACCAGCTCGGTCACCTTGCACAATACTTTTGACAG
GTTTCCGAAACATCTGCATGGACTTCACTTTCTTCGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029158XLOC_029158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045601-exon-scaffold_10-1491911889:114053..114319TCONS_00045601-exon-scaffold_10-1491911889:114053..114319Clytia hemisphaericaexon
TCONS_00045601-exon-scaffold_10-1510915933:114053..114319TCONS_00045601-exon-scaffold_10-1510915933:114053..114319Clytia hemisphaericaexon
TCONS_00045601-exon-scaffold_10-1575043694:114053..114319TCONS_00045601-exon-scaffold_10-1575043694:114053..114319Clytia hemisphaericaexon
TCONS_00045601-exon-scaffold_10-1491911889:114381..115242TCONS_00045601-exon-scaffold_10-1491911889:114381..115242Clytia hemisphaericaexon
TCONS_00045601-exon-scaffold_10-1510915933:114381..115242TCONS_00045601-exon-scaffold_10-1510915933:114381..115242Clytia hemisphaericaexon
TCONS_00045601-exon-scaffold_10-1575043694:114381..115242TCONS_00045601-exon-scaffold_10-1575043694:114381..115242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:114053..115242 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.98714	0	0.310489	0	0	1.2138	0	0.8292	0	0.37575	0.141125	0.820054	0	3.98153e-07	0.539704	4.96274e-08	0.78317	1.91101	0.662274	0.457621	0.0760639	0.238463	0	1.52067	1.43699	0.36425	0.182971	0	1.36043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
Blast
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BLAST of TCONS_00045601 vs. Swiss-Prot (Human)
Match: SELB (Selenocysteine-specific elongation factor OS=Homo sapiens GN=EEFSEC PE=1 SV=4)

HSP 1 Score: 295.819 bits (756), Expect = 9.415e-94
Identity = 158/335 (47.16%), Postives = 208/335 (62.09%), Query Frame = -1 
Query:  203 TKKVKSMQMFRKPVKSIVQGDRAGICVTQFDPKKLERGVVCSPGFLPTLYGGIVKVHKIPYFKGKCLNKAKFHITVGHETVMGKLQFFGKPPSDNDHVDEE----QFSTDTEYEFQEELNEKTQTKLANTNDR--------------ETQYVMIEFDHPVIGQADSLVIGSRLDTDINLNTCRLAFYGRIVLPFLSRDYQKEELPKLKIFKWKSKEGTVERMADEYSVIVKSLFKKETNLALFTNMKVKLSSGDEGTIEGSFGQSGKIKVRIPKGLADSTKERLSTTKK-----GKGKQA-NESGGEAKEP---IKVLLEFKKYIYDSSHKMIQT 1126
             KKVKSMQMF  P+ S +QGDR GICVTQFDPK LERG+VC+P  L T++  ++ V KIPYF+G    KAKFHITVGHETVMG+L FF   P   D+ D+E     F+   EY FQE+   K  T     ND                 Q+ ++EF+ PV      LVIGSRLD DI+ NTCRLAF+G ++     R+Y    LP+LK++K K K G VER  D+YSVI +SLFKKETN+ LF  +KV LS+G+ G I+ +FGQSGK K+ IP GL+  +K+ L+   K     G+G+    E   E  EP   + + L FK+Y++D+  +M+Q+
Sbjct:  264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAP---DNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQS 595
The following BLAST results are available for this feature:
BLAST of TCONS_00045601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SELB9.415e-9447.16Selenocysteine-specific elongation factor OS=Homo ... [more]
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