TCONS_00045589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045589
Unique NameTCONS_00045589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045589 ID=TCONS_00045589|Name=TCONS_00045589|organism=Clytia hemisphaerica|type=transcript|length=347bp
TGTGTGATTTCCGACGATCGAAGAAAGGTGGAAATCGAGCTTCTCCGCGT
TTTTCGTACGAAAATCTACCATCTTGCGCAGATTGGAACAAACTGCGCAT
GCGCAATATGCTTTAAAGAAGCTGCTTGTCAGCTTGTCAATCCTCGCTCT
TGAACTAAGTTAAGTTTCACATTTAAGTTTACTGTTATAACATTAATGCT
ATAATGCTATAACCCGTTTATCAATGCTGGGCAACCATGACCCAACGATC
AAGATGTTCTACTGGAGCGATACCGGGACACAACTATCATTGAGACATAC
ATTCGAATTACACAGTTGCAAAATACGTTACATTACAAAAATTCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_1:21432..21778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045589 ID=TCONS_00045589|Name=TCONS_00045589|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_1:21432..21778 (Clytia hemisphaerica)
GTCGAATTTTTGTAATGTAACGTATTTTGCAACTGTGTAATTCGAATGTA
TGTCTCAATGATAGTTGTGTCCCGGTATCGCTCCAGTAGAACATCTTGAT
CGTTGGGTCATGGTTGCCCAGCATTGATAAACGGGTTATAGCATTATAGC
ATTAATGTTATAACAGTAAACTTAAATGTGAAACTTAACTTAGTTCAAGA
GCGAGGATTGACAAGCTGACAAGCAGCTTCTTTAAAGCATATTGCGCATG
CGCAGTTTGTTCCAATCTGCGCAAGATGGTAGATTTTCGTACGAAAAACG
CGGAGAAGCTCGATTTCCACCTTTCTTCGATCGTCGGAAATCACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029150XLOC_029150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045589-exon-scaffold_1-1491911889:21432..21778TCONS_00045589-exon-scaffold_1-1491911889:21432..21778Clytia hemisphaericaexon
TCONS_00045589-exon-scaffold_1-1510915933:21432..21778TCONS_00045589-exon-scaffold_1-1510915933:21432..21778Clytia hemisphaericaexon
TCONS_00045589-exon-scaffold_1-1575043694:21432..21778TCONS_00045589-exon-scaffold_1-1575043694:21432..21778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:21432..21778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39598	6.92388	5.76718	0.242427	2.00034	0	0.559984	2.66808	2.37686	3.15371	1.01757	0.648502	2.18122	1.04347	0.559894	0.438013	0.0880678	0.569883	4.88074	1.14837	0.0662958	0.883456	3.59895	0.744369	0.822306	0.84807	0	0	0.506116	0.859109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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