TCONS_00045578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045578
Unique NameTCONS_00045578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045578 ID=TCONS_00045578|Name=TCONS_00045578|organism=Clytia hemisphaerica|type=transcript|length=765bp
GCTTTACTTTTAAATCTACTTCTCATTATACTTCCAACAAGCACTGAAGC
TTCGAAAGGAAAAACTGACAAGCCTAATATGGTTGATAAAGAACATTATA
ACAATATGTACGGAGCCAGGCTACAACGTAAAGACATAGACTACCTCAAG
CCCGGTGGTAGCCCGTGGCCTTGGTACGAACAGGCTAAAATACAACACGG
CGATGACAAATTACTTCATAAAGAGCAGAAACGCGAACACAAAGACTACC
AAGCAGAGTACAAGAAACAGTTCAGTGAAAACATGAGAGTTTATCAAGAA
ACACAACGAGTCAATTTGGAGACTGAACGTGAAGGAGCCATCTTGAATGC
AACCAACACGAATGACGCAACGAAATCAAATCATCAAAAACGAAGGAGGA
AAGAGGAGATTGTACTTTCCAAGAAAGAATCGAGACGATTTCTAAAGTGA
GGTTTCAGAAACGCATTGAGAATCTTTGATAgatgattgaaaataaattc
ggCCAAAAACACTTTTCGAACAATCGAAAATATAGAATGGTAGATTGCTG
TAATCAAAATTGTCGAAAATGAAAGTGTTCTGCAAAATACACGCTTTCTA
TGCATGATTGACcatgaacaaaataaaacattaaaaaaacaaagcatGGT
TTACTAGAAGCCGCTAAAGTTCCAGCTGGCTTGGAAATGGATAAGTTTTG
CAATCAAGAGATTTTAAACCAATGTTCATGAGCTTTGGAGAATTATTTGT
ACAGTAGTCTCTCGC
Run BLAST on NCBI

protein sequence of TCONS_00045578-protein

>TCONS_00045578-protein ID=TCONS_00045578-protein|Name=TCONS_00045578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
ALLLNLLLIILPTSTEASKGKTDKPNMVDKEHYNNMYGARLQRKDIDYLK
PGGSPWPWYEQAKIQHGDDKLLHKEQKREHKDYQAEYKKQFSENMRVYQE
TQRVNLETEREGAILNATNTNDATKSNHQKRRRKEEIVLSKKESRRFLK
Run BLAST on NCBI

transcript from alignment at scaffold_1:139655..140626-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045578 ID=TCONS_00045578|Name=TCONS_00045578|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at scaffold_1:139655..140626- (Clytia hemisphaerica)
GCTTTACTTTTAAATCTACTTCTCATTATACTTCCAACAAGCACTGAAGC
TTCGAAAGGAAAAACTGACAAGCCTAATATGGTTGATAAAGAACATTATA
ACAATATGTACGGAGCCAGGCTACAACGTAAAGACATAGACTACCTCAAG
CCCGGTGGTAGCCCGTGGCCTTGGTACGAACAGGCTAAAATACAACACGG
CGATGACAAATTACTTCATAAAGAGCAGAAACGCGAACACAAAGACTACC
AAGCAGAGTACAAGAAACAGTTCAGTGAAAACATGAGAGTTTATCAAGAA
ACACAACGAGTCAATTTGGAGACTGAACGTGAAGGAGCCATCTTGAATGC
AACCAACACGAATGACGCAACGAAATCAAGTAGGGTTGAATTTTTCGGCT
TCTTTATAGAACTCCAGTATTGTTTCTCGCAAAGAACAAAAAATATCTGT
CTAACTAAATTATTATTCTTGATGGTCCTCAAATTCATTATGGTAGCTTA
AACTTGTCATCTACCTTTTTTTCTAGTTCTAGACTCAATATCGAGATTAA
AGGAGCGAGTTTGAAAATTCCATAACATTTTTTTAGATCATCAAAAACGA
AGGAGGAAAGAGGAGATTGTACTTTCCAAGAAAGAATCGAGACGATTTCT
AAAGTGAGGTTTCAGAAACGCATTGAGAATCTTTGATAGATGATTGAAAA
TAAATTCGGCCAAAAACACTTTTCGAACAATCGAAAATATAGAATGGTAG
ATTGCTGTAATCAAAATTGTCGAAAATGAAAGTGTTCTGCAAAATACACG
CTTTCTATGCATGATTGACCATGAACAAAATAAAACATTAAAAAAACAAA
GCATGGTTTACTAGAAGCCGCTAAAGTTCCAGCTGGCTTGGAAATGGATA
AGTTTTGCAATCAAGAGATTTTAAACCAATGTTCATGAGCTTTGGAGAAT
TATTTGTACAGTAGTCTCTCGC

Coding sequence (CDS) from alignment at scaffold_1:139655..140626-

>TCONS_00045578 ID=TCONS_00045578|Name=TCONS_00045578|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_1:139655..140626- (Clytia hemisphaerica)
ATCATCAAAAACGAAGGAGGAAAGAGGAGATTGTACTTTCCAAGAAAGAA
TCGAGACGATTTCTAAAGTGAGCTTTACTTTTAAATCTACTTCTCATTAT
ACTTCCAACAAGCACTGAAGCTTCGAAAGGAAAAACTGACAAGCCTAATA
TGGTTGATAAAGAACATTATAACAATATGTACGGAGCCAGGCTACAACGT
AAAGACATAGACTACCTCAAGCCCGGTGGTAGCCCGTGGCCTTGGTACGA
ACAGGCTAAAATACAACACGGCGATGACAAATTACTTCATAAAGAGCAGA
AACGCGAACACAAAGACTACCAAGCAGAGTACAAGAAACAGTTCAGTGAA
AACATGAGAGTTTATCAAGAAACACAACGAGTCAATTTGGAGACTGAACG
TGAAGGAGCCATCTTGAATGCAACCAACACGAATGACGCAACGAAATCAA
ATCATCAAAAACGAAGGAGGAAAGAGGAGATTGTACTTTCCAAGAAAGAA
TCGAGACGATTTCTAAAGTGAGCTTTACTTTTAAATCTACTTCTCATTAT
ACTTCCAACAAGCACTGAAGCTTCGAAAGGAAAAACTGACAAGCCTAATA
TGGTTGATAAAGAACATTATAACAATATGTACGGAGCCAGGCTACAACGT
AAAGACATAGACTACCTCAAGCCCGGTGGTAGCCCGTGGCCTTGGTACGA
ACAGGCTAAAATACAACACGGCGATGACAAATTACTTCATAAAGAGCAGA
AACGCGAACACAAAGACTACCAAGCAGAGTACAAGAAACAGTTCAGTGAA
AACATGAGAGTTTATCAAGAAACACAACGAGTCAATTTGGAGACTGAACG
TGAAGGAGCCATCTTGAATGCAACCAACACGAATGACGCAACGAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029141XLOC_029141Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045578-proteinTCONS_00045578-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045578-exon-scaffold_1-1575043694:140248..140626TCONS_00045578-exon-scaffold_1-1575043694:140248..140626Clytia hemisphaericaexon
TCONS_00045578-exon-scaffold_1-1575043694:139655..140040TCONS_00045578-exon-scaffold_1-1575043694:139655..140040Clytia hemisphaericaexon
TCONS_00045578-exon-scaffold_1-1510915933:140248..140626TCONS_00045578-exon-scaffold_1-1510915933:140248..140626Clytia hemisphaericaexon
TCONS_00045578-exon-scaffold_1-1510915933:139655..140040TCONS_00045578-exon-scaffold_1-1510915933:139655..140040Clytia hemisphaericaexon
TCONS_00045578-exon-scaffold_1-1491911889:140248..140626TCONS_00045578-exon-scaffold_1-1491911889:140248..140626Clytia hemisphaericaexon
TCONS_00045578-exon-scaffold_1-1491911889:139655..140040TCONS_00045578-exon-scaffold_1-1491911889:139655..140040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:139655..140626 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0638089	0	0	0.0706831	0	0	1.06647	0.998419	0.215082	0.19981	0.258588	0.849927	2.24918	1.32215	1.12322	3.18843	1.67654	1.76749	0	0.0709795	1.17219	0.451383	0.292648	0.465604	0.753597	0.48914	0.174989	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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