TCONS_00045577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045577
Unique NameTCONS_00045577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045577 ID=TCONS_00045577|Name=TCONS_00045577|organism=Clytia hemisphaerica|type=transcript|length=966bp
tctctgtaattcgaacaaatattCCCCGttcaagttcgaattagagagag
tcaactgtatttttaCTGTTAGGGACTGTCTAGGAAAGGCTGTTCGGATT
ATATTTTCATTAtatttcacttttcatttatGAAGGATctctttgttttt
cattcagtataataaGTTTGATACGATAAACAAATAATCATAAAATGATT
TTCTAAACGCTTGCGTTATAAAAATGACCGACTAAATTGTAATGCAATGA
GACATATAGCTCGATGGAACGGTCGATTGTTTTGTGTATCATTTTGGTAG
CCATGACAACATGGTGCGTCGAGCAAGAAGACTGGGATCGCTACTTAGAC
AACCGTTATAATTACATCAGTCATTTTAGTGAAATGTTGAGGAGAAAATC
TGATAACTATGCTGGAAAACGTGATGAATATCAGAATTGGTTGGTGAATT
ACCGTGAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGACGAT
GAAAAAGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAACGACA
ACGTGAACACAGTCATAATATGGGACGACATATGATCGAGAAGAGAActC
TGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAGTAC
CGAAGAAGGATTTGAACACAAAATGTAGTCGAAATAAAGAAGTCTAAAGT
TCAAAAGAAGTGGACCATGATAGTACCTCATATGTCAACATGTAACAAGA
TAATTGAGACCTTTCTGGAGAGCTTGATTATACTCTGTTAAGCATTGATG
CAGAAATGCCATTAGCAtcttaattaaaacttgaaccTTTTTTATTGTAA
ACGAGGTCAAATTGCATCATATCACAAAATTGGACAAGTATCAGATTTTC
TGAAGACATTAAAATTACCTGGAATGCATAATGTATAAATTGtgctgaaa
agaagaaagaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00045577-protein

>TCONS_00045577-protein ID=TCONS_00045577-protein|Name=TCONS_00045577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MERSIVLCIILVAMTTWCVEQEDWDRYLDNRYNYISHFSEMLRRKSDNYA
GKRDEYQNWLVNYRETEREDQRTHTEHDDEKVEQTHENHEVMRERQREHS
HNMGRHMIEKRTLESIIRTKKKANQFLKYRRRI
Run BLAST on NCBI

transcript from alignment at scaffold_1:135677..139593-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045577 ID=TCONS_00045577|Name=TCONS_00045577|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at scaffold_1:135677..139593- (Clytia hemisphaerica)
TCTCTGTAATTCGAACAAATATTCCCCGTTCAAGTTCGAATTAGAGAGAG
TCAACTGTATTTTTACTGTTAGGGACTGTCTAGGAAAGGCTGTTCGGATT
ATATTTTCATTATATTTCACTTTTCATTTATGAAGGATCTCTTTGTTTTT
CATTCAGTATAATAAGTTTGATACGATAAACANTATGAAGGATCTCTTTG
TTTTTCATTCAGTATAGTAAGTTTGATACGATAAACAAATAATCATAAAA
TGATTTTCTAAACGCTTGCGTTATAAAAATGACCGACTAAATTGTAATGC
AATGAGACATATAGCTCGATGGAACGGTCGATTGTTTTGTGTATCATTTT
GGTAGCCATGACAACATGGTGCGTCGAGCAAGAAGACTGGGATCGCTACT
TAGACAACCGTTATAATTACATCAGTCATTTTAGTGAAATGTTGAGGAGA
AAATCTGATAACTATGCTGGAAAACGTGATGTGAGTAAAAATACACGTTT
TTTTTTATAAGAACGTCAAAACTTTTCGAAGCCTTCGGATGTTCTTAGTT
TTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCA
TTTTTTGAGCATTTTGATGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCC
AAAGCCTTAGTATGTTCTTAGAATGTTCTTAAATTTTTGGGCTCGAAGCC
TTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAAACGTGTAGATCAA
CTATCGGTATAAATAAGGGTAAAGGGATTTATAATGACCAATCTTCACCT
ATTCCTTAAAATTAGAAATTATCACGGACTTAAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAACGTCTTTGCAATCTTTTTGTTTACATTTTGTCTTCATTC
ACTTTCGTTTACTGTTGAAAACATAACAAAGTTTTAGCTATACTCTTAAA
CCGCGTATAATAGGCGGTTAAGCCAATCAGCTTTCGAGCTGACATCAGCA
TGTATTTCAGAGTATACCATGGAAGTACCAGCAACTCCGACCCCTACTAT
AACAGTCAGGAACTATTGCAAATTAGGCTATGATGGCCAAACTAGGATGT
TCGCCTAATTAGGCTAGGATTTATATCCTAGTTAGGATATTAATGGCTTA
ATTTGGATATATGAAATATTCAAACCTAAATATCTTGAGAACAAGTAAAA
TCCGCGTCAATCTTACTATATGGACTTGTTACTTGTACTAAGAAGAGTAT
TTAAAGCGAAAAACTTTTTTCTTTTTAGAGCGGAGTGAAACGATGTGATT
ATTTTATTAAAATTTAGCTTAATTTGGCCATGATAGCCAAATTAAGCCGA
TTTAAGTTCTACATGCAGCGCGCCATTTTTTGTCTGAAAAATGAAAAAAA
CTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATCTTGAAATAATTTCGACTGTACTGCTGTATATATG
TAAACATAATTTTGCTGAAACAGCATAATATTTAAAAACTGAATATTTTC
TCAGCCCGCTCAAATTTTACTCAAAAAACATTCGGAACTCATTCAAATAA
ATAAGAATTTGACATTTTAAGCTAAATATTGACGCAGATTTTTAAATACA
AGTCAAAAATTGGAATTTTGTTCCTTCCAGCCTAATTAGGCTACAATTTC
TGGCTTAATTAAGCCATCGTATCCAAGTTAGGCCAGAATCGGCGAACATA
GCCTGATTTGCAATAGTTCCTGACTGTATAAGTATAGCGCTATTCCCTTT
AAAATTTGTGGAAGCTTTTACTGCTCGACCAAAACATCCTAAACTGTTAA
TAGTTATAAAAAAGGCGAAAAATGAGGGTATTGATTTTTTTTGAAAAGTA
ATGTTTTAGCATTTAGAACATAACTTCTGGAGTTTATCTTTTCTTTTTCT
AATGCAAAACGATAGATTCTTTAACAGTCGATAGACCTCGAGAAAATTAA
CTTCAAAGAGGGGGACTTTTTTCTGGAGCACCCGGTAGTTTTAGTGATAA
GCAAAGGTTTTCAAAACTTTTATTCAGGTGAGCGAACTGAGTAAGTACTA
CATTGTAAGAACATCAAACGTAAACTATAAGTGCTAATCTTTAACACAAA
TTGCTACCTTCGGCTTAGGGTAAAATTAGCTGGTATTATATCACCAACGC
TTCAACTCATGTTAGAATATTTCGAATAGGAATATCAGAATTGGTTGGTG
AATTACCGTGAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGA
CGATGAAAAAGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAAC
GACAACGTGAACACAGTCATAATATGGGACGACATATGATCGAGAAGAGA
AGTAAGATCCATAGATTTATAAAGCCCGAATGGCTAGATGTCGTGCTTTG
GCTGAAAAGTGTGCCGAGGTTAGGTAGGAAATCCTACCTAGGTCTACCTT
GTCACCACGTGCCGCTTGTCGATAACAGGGTCCCAAATTTAATAATTTGC
CAGCGACACGTCCCATTCGGCTGTCAAGTTCAGTGCCCCCCCCCGGACCT
TTGTGCACTTCAAAACTTGCCACAGCAAACACAGAGCTTTTATAGAATAC
AGTGTGTTCCATAAAAGATTCCTCTCTAATTGATAATTTCGGCGAGTTTT
TCATGAGATACTCTGTAGAAAAGGATTCCTATGAAATTATATCCCTAGGA
ATCAACAGTCAATGAGTACATATCCCTAAAAATTCTCTGAACCTAATTTT
GTAACTAATTATAACTTTTTTTCACCAATATACTTTTGTCGTTTCCACAA
CCATAATAAAAATTGAGGTAATAATGGGAGGAGAGGGCAATAACGAACCA
TTGAACCCAACTGTCCTGCCAAAAAAATAATTCACTTTTATTTTTCAGCT
CTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAGTA
CCGAAGAAGGATTTGAACACAAAATGTAGTCGAAATAAAGAAGTCTAAAG
TTCAAAAGAAGTGGACCATGATAGTACCTCATATGTCAACATGTAACAAG
ATAATTGAGACCTTTCTGGAGAGCTTGATTATACTCTGTTAAGCATTGAT
GCAGAAATGCCATTAGCATCTTAATTAAAACTTGAACCTTTTTTATTGTA
AACGAGGTCAAATTGCATCATATCACAAAATTGGACAAGTATCAGATTTT
CTGAAGACATTAAAATTACCTGGAATGCATAATGTATAAATTGTGCTGAA
AAGAAGAAAGAAAAAAT

Coding sequence (CDS) from alignment at scaffold_1:135677..139593-

>TCONS_00045577 ID=TCONS_00045577|Name=TCONS_00045577|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_1:135677..139593- (Clytia hemisphaerica)
CTCTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAG
TACCGAAGAAGGATTTGAGAATATCAGAATTGGTTGGTGAATTACCGTGA
GACGGAACGTGAGGACCAGAGAACACACACGGAACACGACGATGAAAAAG
TGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAACGACAACGTGAA
CACAGTCATAATATGGGACGACATATGATCGAGAAGAGAAATGGAACGGT
CGATTGTTTTGTGTATCATTTTGGTAGCCATGACAACATGGTGCGTCGAG
CAAGAAGACTGGGATCGCTACTTAGACAACCGTTATAATTACATCAGTCA
TTTTAGTGAAATGTTGAGGAGAAAATCTGATAACTATGCTGGAAAACGTG
ATCTCTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCA
AGTACCGAAGAAGGATTTGAGAATATCAGAATTGGTTGGTGAATTACCGT
GAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGACGATGAAAA
AGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAACGACAACGTG
AACACAGTCATAATATGGGACGACATATGATCGAGAAGAGAAATGGAACG
GTCGATTGTTTTGTGTATCATTTTGGTAGCCATGACAACATGGTGCGTCG
AGCAAGAAGACTGGGATCGCTACTTAGACAACCGTTATAATTACATCAGT
CATTTTAGTGAAATGTTGAGGAGAAAATCTGATAACTATGCTGGAAAACG
TGATCTCTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCT
CAAGTACCGAAGAAGGATTTGAGAATATCAGAATTGGTTGGTGAATTACC
GTGAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGACGATGAA
AAAGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAACGACAACG
TGAACACAGTCATAATATGGGACGACATATGATCGAGAAGAGAAATGGAA
CGGTCGATTGTTTTGTGTATCATTTTGGTAGCCATGACAACATGGTGCGT
CGAGCAAGAAGACTGGGATCGCTACTTAGACAACCGTTATAATTACATCA
GTCATTTTAGTGAAATGTTGAGGAGAAAATCTGATAACTATGCTGGAAAA
CGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029140XLOC_029140Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045577-proteinTCONS_00045577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045577-exon-scaffold_1-1575043694:139413..139593TCONS_00045577-exon-scaffold_1-1575043694:139413..139593Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1575043694:139114..139357TCONS_00045577-exon-scaffold_1-1575043694:139114..139357Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1575043694:136593..136764TCONS_00045577-exon-scaffold_1-1575043694:136593..136764Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1575043694:135677..136045TCONS_00045577-exon-scaffold_1-1575043694:135677..136045Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1510915933:139413..139593TCONS_00045577-exon-scaffold_1-1510915933:139413..139593Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1510915933:139114..139357TCONS_00045577-exon-scaffold_1-1510915933:139114..139357Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1510915933:136593..136764TCONS_00045577-exon-scaffold_1-1510915933:136593..136764Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1510915933:135677..136045TCONS_00045577-exon-scaffold_1-1510915933:135677..136045Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1491911889:139413..139593TCONS_00045577-exon-scaffold_1-1491911889:139413..139593Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1491911889:139114..139357TCONS_00045577-exon-scaffold_1-1491911889:139114..139357Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1491911889:136593..136764TCONS_00045577-exon-scaffold_1-1491911889:136593..136764Clytia hemisphaericaexon
TCONS_00045577-exon-scaffold_1-1491911889:135677..136045TCONS_00045577-exon-scaffold_1-1491911889:135677..136045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:135677..139593 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.045702	0	0.0519152	0	0.0499429	3.49131	4.63919	5.61019	2.01159	1.32949	3.38376	6.93289	5.82106	5.4555	11.0498	8.61463	7.34686	0	0	6.52159	5.82496	3.71627	3.01337	3.66801	5.03633	1.44139	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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