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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045573 ID=TCONS_00045573|Name=TCONS_00045573|organism=Clytia hemisphaerica|type=transcript|length=1855bp
CAATAGAAGTCATTCTGTCATTTCATTTGTCACATGCATGGGTTTCACAT
TTCAAGTtgtagaaatataaggaaaagtGTTGTTCAATGTATTTGAGTCA
AATTCAAAAGAAGGATGAGCATTCTATAATATCTGTGAACAAACAGAACA
GCATATCCAATAAATATGCCACGAATAGAAACGGAAACCAAACTTGATTT
CAAGGATGTGTTGATCCGACCCAAAAGAAGTACCATCCGGTCACGTAAAG
ATGTGGAAATCAGCCGTCAATACATGTACAGACATACTTCACGGACATTT
CCGGATGATATGATACCCGTTATTGCTGCAAATATGGATACAGTTGGAAC
CTTCGAAATGGCGGTTGAATTGGCAACCCATAAATTAATTTGCTGTATTC
ATAAGCATTACTCTGTAGAAGAGTGGGTCGAGTTTGCCAAGAACAACAAG
GAGCTTCTACCTTACATTGTGGCAACCAGTGGTATGAATGATGCAGATGA
GGAAAAACTTGGTAAAATCATTGAAGCTATCCCAGAAATTAACGCCATTT
GTTTGGATGTTGCTAATGGTTACTCAGAGCATTTCTTGGCTTTGGTAAAA
CGTACACGTGAAAGATTTCCAGAGCATATCCTAATGGCTGGAAACGTAGT
GACGGGAGAGATGGTCGAGCAGTTGATATTGGACGGTGTCGACATTGTTA
AGGTCGGAATCGGCCCTGGCTCTGTTTGCACGACGCGCAAGAAGACTGGC
GTCGGCTATCCTCAACTCAGTGCGGTTTTGGAATGCGCAGATGCCGCCCA
CGGCTTGAAAGGTCATATCGTGTCTGATGGTGGTTGTACTAACCCTGGTG
ATATCTGTAAGGCGTTTGGGGCGGGCGCTGATTTTGTTATGTTGGGCGGC
ATGTTTGCTGGACACGACGAATCGGGCGGTGAATTGGTAGAACGTGATGG
GCGCCAAATGAAATTGTTCTATGGAATGAGCTCTGATACTGCTATGAAGA
AGCACGCCGGAGGAGTAGCAGAGTATCGTGCATCCGAAGGTAAAACGGTG
GAGATTCCATACCGAGGAAAAGTCAAAGGCACAATTTTGGATATCTTAGG
TGGTATTAGATCAGCCTGTACTTATGTTGGAGCTAATAAATTGAAAGAAC
TTTCGAAACGTACCACATTTATTAGAGTTACGTTACAAACAAATGATATC
TTCAGATAAAATATAAACTATCATATTGGAATTTGATACACAGGCAAAGT
CCAAATTGCATAacattattgtttttttgtaacCATTTATTTGTAGAATA
TTTTCTGAATTGTTAGTAAGCATTGGCATAATAAGATAAACGAATTAAAA
ACTGAATCAAAGCAATGTAACCTATAACCTTCCCGCTAAGATTTTCGTTC
TTTTTGGAATACTTAGTGTCATAAAAATATGCTCTCCTATACAAATTTTG
CGACCCTCTTGACTACTAATACTCAAAGAGATTTTCCAGGTACTTGGGAA
CCTGATCTTTGGAATCCAGGTGAGcaaaactacacgttttttttttatta
gaacccagtttataagaacatttaggctgaaattcgtcgaaaaatgaaga
acatcgtaagaacatgcccagcctcagtttggaaaaaaatgacaagaaac
tgcaattttttcctcttttcaagcagttttaaccgaacttagggatggat
tttctaaaatcgagagtcaatattgtcaaaaattttccaattttaagtgc
tctttattttgcatgatataatcgatttagagtagtctgaaaaattaaga
acgcatttaagaacattttaggctgaaagttgctaaaaaaataagcacat
ccagg Run BLAST on NCBI protein sequence of TCONS_00045573-protein >TCONS_00045573-protein ID=TCONS_00045573-protein|Name=TCONS_00045573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MPRIETETKLDFKDVLIRPKRSTIRSRKDVEISRQYMYRHTSRTFPDDMI
PVIAANMDTVGTFEMAVELATHKLICCIHKHYSVEEWVEFAKNNKELLPY
IVATSGMNDADEEKLGKIIEAIPEINAICLDVANGYSEHFLALVKRTRER
FPEHILMAGNVVTGEMVEQLILDGVDIVKVGIGPGSVCTTRKKTGVGYPQ
LSAVLECADAAHGLKGHIVSDGGCTNPGDICKAFGAGADFVMLGGMFAGH
DESGGELVERDGRQMKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEIPYR
GKVKGTILDILGGIRSACTYVGANKLKELSKRTTFIRVTLQTNDIFR Run BLAST on NCBI transcript from alignment at scaffold_1:208129..211288+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045573 ID=TCONS_00045573|Name=TCONS_00045573|organism=Clytia hemisphaerica|type=transcript|length=3160bp|location=Sequence derived from alignment at scaffold_1:208129..211288+ (Clytia hemisphaerica)
CAATAGAAGTCATTCTGTCATTTCATTTGTCACATGCATGGGTTTCACAT
TTCAAGTtgtagaaatataaggaaaagtGTTGTTCAATGTATTTGAGTCA
AATTCAAAAGAAGGATGAGCATTCTATAGTAAGCTGTTGTATATTGTACT
GTAtactagcctggatatctacacattttttcttatttttgtgtTTCTAG
TTGACTGTCTGCGCTGGTATTGTCAGTAGTTCTGCTAAAGATTCGGTCGA
CTTTTCGTTTATTTGAACAAATATTAGGgtcagggtggaaattagagAGT
GTTTCAATTTTACGTCAAATTTTCGTTCTGGCAGGGTTCCTAacttacca
aacattcatatctgacagagACTACTTTCTAGTGGCACGTCCCCGTCCGT
CCCCCCCTTCCCCGAATTGGCGTTCTTTTAAATGTATGAAATTGTTGTCT
CAAAGAAGAATAAAACCGTTTTAAAAGTCTAAGAGGGCTTTTTTTTACCG
TTCGTATTTAAACACTTACTTAAGTCAGATTACTGAATTGATTTTAAAGG
TCCCATGAAACTATTCACGTAAAATACTAGCACGAATTatgaaaacatat
aaaaataGTGACTGTAggttttaaagtgttttaaagGCTCTAAAATATTT
AGTGATTAGTGTCAGTTTTCTGATGAAAATCTGTCAGATCTGTGCTTTAT
ATTCACGTTGCTTAATCACATACGTCGGTTGAAACAGGGTGAATAACAAA
GCGAAGGTTTTGATATAAGATATTTATACTACAAAACTGAGACGAAATTG
ACCATTTCAAGTTTGATTTTCACAAAGCAGGAATATCAGACACAAGATCT
TGTGGTGGTGTGTGGTTCAAAATGACGAAGTTTGACttatttcatttcaa
tattaAGCTAGCCAGTCAGCAATTTGAATCCCACACGCACACAACGTATA
TCATTCACAACCAGACTGCAGATTAatcagtttttttatataacATCCAA
AGCAAAAGAGTGGATTTTATTTCTTCGCTGCTAGGATAGGATTAAGATTA
GGTTAGAATTTTCATTAACATCCTGACACGTATTGAACTTTTATGAATTT
GAGGAATAGATCAATGCAAAAAATAATATACATCCATGCATTATGTATAA
AAGAAgcaattttgaataactttgaaACGTTCCGCCttttcacaattttt
aaaaGGATGTATGTGAATCAAAATCTTAATCAGCTTAGCAGGTAGATTGA
TGCAAAGAGTTATACAGGAATAAACATGAATGTGTAGAGGAGAGAGAGGA
TATCTGAAATGTTGATTTAATAACGTCCGTTTTCTATCGGGGCTTGGTGT
GCTGAATAGTGTTTAGGCCTTTTTGATACTTGGAAACTTGACCTTCGCAG
AATTTCACCATACTCTTTTACTGTTGATTTTAGATATCTGTGAACAAACA
GAACAGCATATCCAATAAATATGCCACGAATAGAAACGGAAACCAAACTT
GATTTCAAGGATGTGTTGATCCGACCCAAAAGAAGTACCATCCGGTCACG
TAAAGATGTGGAAATCAGCCGTCAATACATGTACAGACATACTTCACGGA
CATTTCCGGATGATATGATACCCGTTATTGCTGCAAATATGGATACAGTT
GGAACCTTCGAAATGGCGGTTGAATTGGCAACCCATAAATTAATTTGCTG
TATTCATAAGCATTACTCTGTAGAAGAGTGGGTCGAGTTTGCCAAGAACA
ACAAGGAGCTTCTACCTTACATTGTGGCAACCAGTGGTATGAATGATGCA
GATGAGGAAAAACTTGGTAAAATCATTGAAGCTATCCCAGAAATTAACGC
CATTTGTTTGGATGTTGCTAATGGTTACTCAGAGCATTTCTTGGCTTTGG
TAAAACGTACACGTGAAAGATTTCCAGAGCATATCCTAATGGCTGGAAAC
GTAGTGACGGGAGAGATGGTCGAGCAGTTGATATTGGACGGTGTCGACAT
TGTTAAGGTCGGAATCGGCCCTGGCTCTGTTTGCACGACGCGCAAGAAGA
CTGGCGTCGGCTATCCTCAACTCAGTGCGGTTTTGGAATGCGCAGATGCC
GCCCACGGCTTGAAAGGTCATATCGTGTCTGATGGTGGTTGTACTAACCC
TGGTGATATCTGTAAGGCGTTTGGGGCGGGCGCTGATTTTGTTATGTTGG
GCGGCATGTTTGCTGGACACGACGAATCGGGCGGTGAATTGGTAGAACGT
GATGGGCGCCAAATGAAATTGTTCTATGGAATGAGCTCTGATACTGCTAT
GAAGAAGCACGCCGGAGGAGTAGCAGAGTATCGTGCATCCGAAGGTAAAA
CGGTGGAGATTCCATACCGAGGAAAAGTCAAAGGCACAATTTTGGATATC
TTAGGTGGTATTAGATCAGCCTGTACTTATGTTGGAGCTAATAAATTGAA
AGAACTTTCGAAACGTACCACATTTATTAGAGTTACGTTACAAACAAATG
ATATCTTCAGATAAAATATAAACTATCATATTGGAATTTGATACACAGGC
AAAGTCCAAATTGCATAacattattgtttttttgtaacCATTTATTTGTA
GAATATTTTCTGAATTGTTAGTAAGCATTGGCATAATAAGATAAACGAAT
TAAAAACTGAATCAAAGCAATGTAACCTATAACCTTCCCGCTAAGATTTT
CGTTCTTTTTGGAATACTTAGTGTCATAAAAATATGCTCTCCTATACAAA
TTTTGCGACCCTCTTGACTACTAATACTCAAAGAGATTTTCCAGGTACTT
GGGAACCTGATCTTTGGAATCCAGGTGAGcaaaactacacgttttttttt
tattagaacccagtttataagaacatttaggctgaaattcgtcgaaaaat
gaagaacatcgtaagaacatgcccagcctcagtttggaaaaaaatgacaa
gaaactgcaattttttcctcttttcaagcagttttaaccgaacttaggga
tggattttctaaaatcgagagtcaatattgtcaaaaattttccaatttta
agtgctctttattttgcatgatataatcgatttagagtagtctgaaaaat
taagaacgcatttaagaacattttaggctgaaagttgctaaaaaaataag
cacatccagg Coding sequence (CDS) from alignment at scaffold_1:208129..211288+ >TCONS_00045573 ID=TCONS_00045573|Name=TCONS_00045573|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_1:208129..211288+ (Clytia hemisphaerica)
ATGCCACGAATAGAAACGGAAACCAAACTTGATTTCAAGGATGTGTTGAT
CCGACCCAAAAGAAGTACCATCCGGTCACGTAAAGATGTGGAAATCAGCC
GTCAATACATGTACAGACATACTTCACGGACATTTCCGGATGATATGATA
CCCGTTATTGCTGCAAATATGGATACAGTTGGAACCTTCGAAATGGCGGT
TGAATTGGCAACCCATAAATTAATTTGCTGTATTCATAAGCATTACTCTG
TAGAAGAGTGGGTCGAGTTTGCCAAGAACAACAAGGAGCTTCTACCTTAC
ATTGTGGCAACCAGTGGTATGAATGATGCAGATGAGGAAAAACTTGGTAA
AATCATTGAAGCTATCCCAGAAATTAACGCCATTTGTTTGGATGTTGCTA
ATGGTTACTCAGAGCATTTCTTGGCTTTGGTAAAACGTACACGTGAAAGA
TTTCCAGAGCATATCCTAATGGCTGGAAACGTAGTGACGGGAGAGATGGT
CGAGCAGTTGATATTGGACGGTGTCGACATTGTTAAGGTCGGAATCGGCC
CTGGCTCTGTTTGCACGACGCGCAAGAAGACTGGCGTCGGCTATCCTCAA
CTCAGTGCGGTTTTGGAATGCGCAGATGCCGCCCACGGCTTGAAAGGTCA
TATCGTGTCTGATGGTGGTTGTACTAACCCTGGTGATATCTGTAAGGCGT
TTGGGGCGGGCGCTGATTTTGTTATGTTGGGCGGCATGTTTGCTGGACAC
GACGAATCGGGCGGTGAATTGGTAGAACGTGATGGGCGCCAAATGAAATT
GTTCTATGGAATGAGCTCTGATACTGCTATGAAGAAGCACGCCGGAGGAG
TAGCAGAGTATCGTGCATCCGAAGGTAAAACGGTGGAGATTCCATACCGA
GGAAAAGTCAAAGGCACAATTTTGGATATCTTAGGTGGTATTAGATCAGC
CTGTACTTATGTTGGAGCTAATAAATTGAAAGAACTTTCGAAACGTACCA
CATTTATTAGAGTTACGTTACAAACAAATGATATCTTCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045573-exon-scaffold_1-1491911889:208129..208256 | TCONS_00045573-exon-scaffold_1-1491911889:208129..208256 | Clytia hemisphaerica | exon |
| TCONS_00045573-exon-scaffold_1-1510915933:208129..208256 | TCONS_00045573-exon-scaffold_1-1510915933:208129..208256 | Clytia hemisphaerica | exon |
| TCONS_00045573-exon-scaffold_1-1575043694:208129..208256 | TCONS_00045573-exon-scaffold_1-1575043694:208129..208256 | Clytia hemisphaerica | exon |
| TCONS_00045573-exon-scaffold_1-1491911889:209562..211288 | TCONS_00045573-exon-scaffold_1-1491911889:209562..211288 | Clytia hemisphaerica | exon |
| TCONS_00045573-exon-scaffold_1-1510915933:209562..211288 | TCONS_00045573-exon-scaffold_1-1510915933:209562..211288 | Clytia hemisphaerica | exon |
| TCONS_00045573-exon-scaffold_1-1575043694:209562..211288 | TCONS_00045573-exon-scaffold_1-1575043694:209562..211288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:208129..211288 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:1902560 | GMP reductase complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009117 | nucleotide metabolic process |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003920 | GMP reductase activity |
| GO:0003824 | catalytic activity |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009117 |
nucleotide metabolic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:1902560 |
GMP reductase complex |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003920 |
GMP reductase activity |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00045573 vs. Swiss-Prot (Human)
Match: GMPR2 (GMP reductase 2 OS=Homo sapiens GN=GMPR2 PE=1 SV=1) HSP 1 Score: 514.612 bits (1324), Expect = 1.065e-178 Identity = 240/346 (69.36%), Postives = 290/346 (83.82%), Query Frame = 1
Query: 166 MPRIETETKLDFKDVLIRPKRSTIRSRKDVEISRQYMYRHTSRTFPDDMIPVIAANMDTVGTFEMAVELATHKLICCIHKHYSVEEWVEFAKNNKELLPYIVATSGMNDADEEKLGKIIEAIPEINAICLDVANGYSEHFLALVKRTRERFPEHILMAGNVVTGEMVEQLILDGVDIVKVGIGPGSVCTTRKKTGVGYPQLSAVLECADAAHGLKGHIVSDGGCTNPGDICKAFGAGADFVMLGGMFAGHDESGGELVERDGRQMKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEIPYRGKVKGTILDILGGIRSACTYVGANKLKELSKRTTFIRVTLQTNDIF 1203
MP I+ + KLDFKDVL+RPKRST++SR +V+++R + +R++ +T+ +P+IAANMDTVGTFEMA L L +HKHYS+ +W EFA N + L ++ A+SG +D E+L +I+EAIP++ ICLDVANGYSEHF+ VK R+RFP+H +MAGNVVTGEMVE+LIL G DI+KVGIGPGSVCTTRKKTGVGYPQLSAV+ECADAAHGLKGHI+SDGGC+ PGD+ KAFGAGADFVMLGGM AGH ESGGEL+ERDG++ KLFYGMSS+ AMKK+AGGVAEYRASEGKTVE+P++G V+ TI DILGGIRS CTYVGA KLKELS+RTTFIRVT Q N IF
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSG--VPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIF 344
The following BLAST results are available for this feature:
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