TCONS_00045566 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045566
Unique Name	TCONS_00045566
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1175

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_1:164966..171752+

transcript sequence

>TCONS_00045566 ID=TCONS_00045566|Name=TCONS_00045566|organism=Clytia hemisphaerica|type=transcript|length=1175bp
ACACGACAATCTGAAACATACTGACGGAGCCAGGCAGAGCATAGTAAATA
ATCAAGTCTTTTTGGTTCCAACAACAGCAAAAGTATCTTAAAGTTTTAGA
CTTATGTATTAATGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgca
tgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacGGTGCTGA
AGCTTTTAAAGACAGAAATCTACACATCACAATCAACATGTTTGGAGACC
TTAAAAGTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAG
AGTTATATTGAAGGATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGC
TGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGT
ACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGC
GCTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGA
CGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGa
ctgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCC
AAAAAAGCCAACAAGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGA
CGTCAAACCATGGGATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAG
TTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATA
CCTGTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGA
CGATAAGATTTCGACGGACTGGTTAGAAGAGAAAATTACGGAAGACGAAG
AGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAGATTTAAATTCTC
ATTCACCACAGCTTTATCGTTATTTCTTATCTTTATGTACATCTCGAATT
TTGTCAATGAATATTAACAAACTGCTATTTCTATGTCAATTCGactttaa
ttatttttattatccGCTATTTTAAAGGTATTCAGAATCATTTAAAAATC
CTTCAAGTCTTCCCCTTTTTAGGCATCTCAGCGTCGATCGACTTTGGGCT
GTGTGCAGTAATTGCTTTTGATAGCTTCCGAGTTCTGCCATTTTCTGTTT
GTATGAGTAAACAAACACCCACAGG

Run BLAST on NCBI

transcript from alignment at scaffold_1:164966..171752+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045566 ID=TCONS_00045566|Name=TCONS_00045566|organism=Clytia hemisphaerica|type=transcript|length=6787bp|location=Sequence derived from alignment at scaffold_1:164966..171752+ (Clytia hemisphaerica)
ACACGACAATCTGAAACATACTGACGGAGCCAGGCAGAGCATAGTAAATA
ATCAAGTCTTTTTGGTTCCAACAACAGCAAAAGTATCTTAAAGTTTTAGA
CTTATGTATTAATGGTTATCCTCCCTGGCGAAAGTAtggcaaattacgca
tgcgcattATATGGACTGGAATTGGAGCATCCACTATATgacgtgagtat
cacagctcaaataaatatcaatattttatctgatgaaaacttgacctctg
gtACCCAGGGTAATGTGATGACagttattAAATTTGGCCTCGGTTTCCTC
CACGTTCTCACGGCTCTTGTTCTcgttttattttttcgttctttcGTTCT
TTCTAGCGCTGGCGAGCAGCTAGAAatctttattttgaatattttttatg
aatggtCACAcagtttttcttattttcatggCTCCCGTAAGAGGGTTTTT
CTAAGCCGTGTGACCATTTTAGAGGCACTCGTGGTATTTTTGGTTTCTCA
CCGAAATATCAATCTTTTCACTTCTACTTTCAAAAGGGTGCTGAAGCTTT
TAAAGACAGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAA
GTGCTGCTGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTAT
ATTGAAGGGTAATAAATGATTTTATTTCCTTGTAGTTAAAAAGTAATAAT
AATACTTGGAACAGAGGACGGACGACGTGAGGCTAAAAGGGTTGAAGATA
TATATatacttctttccatcttaactcatattgagctGCTTTCTTCCTTA
TagtcattttagatcactagttttacatTGACGGACTTCCATGTCattac
atttttcttttcaactcCAACCTGATCGATTTTCTGtactgtgaatgttc
attctagatttttgttgtaatttgtattgtctttttgttttgtgagtttt
gtctttagtgtttccattttgagtagttcaaggttttatacttctagact
atatatatgtgaagaaataagtatttctgtccaactatatatCCTGAGCC
TTAGCTTTATTAGctactgtgaagtcgggtaactttttttttttatgtac
AATTGACAGTTGAATTAGTGCGATTGTTTTGCCTGATTCTTTTTAGCCAG
TCAGCGTGTGCAAAAGCTCAATTAATATTTATtccaaatctggatgaaaa
agatcaaaacactAACCTGTGCAGATTCTCTTACAGAGCCAAAGCCTTTA
AAGTAAAAACCTGTCATGTGAAGAGGTCAAAATTTGCTCTGAGATGAGAG
ATTTTGAGACACTTAACTCAATAACTACTTGTTATATATATTAAAGAAAG
CCAGGAattaaaagttttgtaaaaatggcTGCATTTAAAAGACTGATGTC
ACCTcgacaatcagtgacaaaatacttggcacaaaagggaaattcaccgg
ggtgttttaaaaccacaatcgatttgcaagtgctctaaagtaggtttgaa
gggcagagttttaactctgagttttaacgctagacttaagacttaggacc
ttaggatctgagaatccaaaagttcaaaaatggtttagtagggcttgaaa
tatagcctagaaaccaataaatccctctaagatcgaaataatcaatgaaa
tcaagttgaaggcctgaaattgacattctcactcgaacttcaattttcaa
aaaatggtaaattagctaAAAGTGCCgatatattatggcactgattgtag
attcataacaaattgaaatatgtgattttgtcaaaatatgtCATCAGTTT
AAAAAGTTATACCAGTTTTAAACATCAAGACATTAGACACCACTGCAtga
tttataaagttttggttcttgttttcaaattacTTGTTACTTCTGTGTAT
CATAACGTGATTATCCATGCTTTTTTTATCTCAGATACATTCCTTCCCAA
GCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTT
TGCCCATGCTTTGAGATGGTACAATCACATTCGCTCTTACTCTTGTGATG
AAAAGAAAAGGTAATTTTTAGTTAAAATAGATACAAGCTTTTGATGGGAC
CAATAACGAACTTTCAAGGACAATTTTTCTTTCATAGCAGGGCCTGAAAT
ATATAACAATATTTTGATGGTGGAATCTATTTTGGTCGGACATTTCATTG
ATTGGGTCAGActatgtccgatgtccgaccatTATTTCAGGCCCTGCATA
CTGTTTTTTGGCTTCTTAAATCAAGGAATGTTCATCTTATCTATTCCATA
TGAGAGAAAATAAACTTTCTTTACCTTTTTTATATTTAGCTTTGCAAGCG
CTACTGGTGATCATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGAC
GATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGGT
ATGGTTCTGAGtggtttttgaattttctttctggATGATGTAACCAGata
aatttttgtatatttaccaTTATTTTAGTGTTGAAAGCTTGATCTGCGTT
ACAAAGCATTCCTGTCATATTCTTGATATTTCTTTAGATGGTAAAAATCA
GTTTATGGGAAAAAAGTTCAAAGCTTTAAATGAACTAAGGAACTCAACAG
TCTTTAACTGTTAAATTTCTACCTCTAGCtgatattaaaattcaaaattt
tagctttgaaTAAACCAAGAAACCCAAGAGTACTTCAATTCTTACTTACT
GAAACTATCATTATTCCCAAATCAATTCATAGactgaagaagaaaagaaa
gtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAG
TAAGTTTACTGAACATGGCAAACCATCATGCTAAATTTCCATTCCACTTT
TGANtaaaagtgatttttgaagccggaactttctaaaaatcgccggaaca
gcctattttcgccggaaaaacggtatttcttgaatttcttgagctttact
ttatattttttcatgaaattttgcacactggcGCCATATGATAATatcaa
aatgtgacggagcccgattttcgaaaaacatttttttccggccgaaaatg
tcagaaatatgccggaaaaaccggttttttgacattttctcgaattttca
ttttcatttttttctgattttttgttgaaagatgcgtattcgcaatgctc
aaaacatggccgagttcgatttttgagaaaaaattttttccggttgaaaa
ttccggaaatctccgtttttgcatattttcattggattttttccttatat
ttctatgtttttcacacaaaaacattattgataacaatgctcaccatcaa
gcatgattcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaaacgctatgttttctgactgattttttttcatttttctccttgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
ttataTTTAGCTTTGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAGCT
GCACAAGCTAAGAAAGACGACGATGATGAATTGGATTTGTTTGGGTCTGA
CTCTGACGAAGAAGAAGAGGTAtggttttgagtggtttttgaattttctt
tctggATGATGTAACCAGataaatttttgtatatttaccaTTATTTTAGT
GTTGAAAGCTTGATCTGCGTTATAAAGCATTCTTGTCATCTTCTTGATAT
TTCTTTGGATGGTAAAAATCAGTTTAtgggaaaaaagttccaaagcTTTA
AATGAACTAAGGAACTCAACAGTCTTTAACTGTTAAATTTCTACCTCTAG
CTGATattataattcaaaattttagctttgaaTAAACCAAGAAACCCAAG
AGTACTTCAATTCTTACTTACTGAAACTATCATTATTCCCAAATCAATTC
ATAGactgaagaagaaaagaaagtcaGAGAAGAACGACTTGCCAAATATG
CTGCCAAAAAAGCCAACAAGAGTAAGTTTACTGAACATGGCAAACCATCA
TGCTAAATTTCCATTCCACTTTTGAGTTGTTTTTTATGCGGCTGTTCTTT
ATTTTTACGTACAGCTTTTGGTATATGCCTTAAATTGATTCAAATTATAA
TTTTCCATTTAGAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTC
AAACCATGGGATGATGAAACTGGTAAGTAACCCATACagtattttatgaa
aatattagctaataaaatttgattttattagATGTTTTTTCCTAGGAATA
ATTGTTttgtgttttaattttcaatttttttttaattgctttaAACACAA
AAAACTTGCTTAATGTATGAATTTTGTATGTTTTTAGACATGAAAGCTCT
AGAAGCAGAAGTTCGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAA
GTGAGTATCTTTTTCTTCTTGATATGTAATTATAAACGTTAATTGTTCTT
GAAGATTTCCAATAACTTATTTCTTAACCCTTTGCATCACCTTAAAtgag
aaaaatatataaattacTGACCAAAacctaaaattggaaaaatgccCAAT
TGGAAAAATGCCCAATTTGAATTGATCAACATGATAGAATAGAATCCAAA
ATGGTGAACACTGAAAACAGAAAAATACAGAAAACATGTGAGGGGATGCC
AAAAATGATGGAAAGACACTGAACTTGGCCTTAAGGCTTAGCCGTTACAC
AACTGCACCCTATTGAATTGAAATGTGAATTTGTATCTTTTTGTGAAATA
TTACAAACTATTTCCCTCAAAATTTACGAGGCTACTCCATGTAACACAAA
TTTGCCTAAATCATCCTTAGGTTACTGTTTAATTAGAAAGTATTAAGTAT
TCATGACAAAAGCTTCCAGCCAAAATTCCCAACATCTACCACAGGTCAAA
AGGTCAATGTCACTTGACAATCTTcatctaccttaagggaagaaattttt
gcggaatttaatttcgcgtaagagagtttcaaaatggcaaatttcgcgga
agttaatttcgcgaatgagctgaattcaaaagtttcacggaatttaattt
tgcgattgagaaatttcaaaagaattttttttacagagaaagtgtttttc
ataattttcatcaaaattcgtgaaattaaattccgtgaaaatttcttccg
tgaaaatttcttcccttaaggtaccaaAGATGCTTCCCCTATTCAAAATT
AGGTTTATTATTGGAGGGTTTATAAGCATAAATAGGCTTTTTTATTCTGC
AACATGTTTAAAACTTAGGTTATGTTCTTATTTGATGTAAGTTCTATCTG
TGGTGAATCATTATTATTCTTCACTTTTCTCTTTAGGCAAACTCATACCT
GTCGGATACGGAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGA
TAAGGTCAGTAAATGAAGTTTGTTTTAGGTTGAGATGTTGTTTTCCTTGC
TCATTCCGATGATTAGATGAAACTCACACACTTACTTATTTGAAACATGT
GAAAATATTCTGCAAATATGAGGATTGAACAATAATGCTCCCATTGTATT
TCTTTAGACTTCAGCCTTTTTATGTTACACTAATCCTGCTTGTTTTGTTT
ATAAGCATGTTCTTTTGGAAAACAGGCTCGGTTATTCTTAGCTCTTTGAT
TCATTTAAAATGGAAAAGAGAATGAATCTTCCCAAATAAACAGCCCATGA
CTACTGACCCACTACCAAAGCTCACTGATATTCTTatgatatgcttattt
ttcaCCAAATCCAAGTAttagtatgcttataaacgttatgcttataaaag
aaaaacgtgtatcgtCCTGTTCAATGATTACTACATATACTCACACATTT
ACTTATTTGATATATCTGTGAAAATATTCTGCAAATATGAGAACCAGGGC
GAAGTTTTAGTTACTGTCAGGTCTTTTTACTTTGTCTAACCAGTTTTGAA
TTCTGTTCAGATAATCCAATGATTATTATAAATCACACACATTCTTTGAT
ATTCGTGAAAATATTCTGCAAATATGAGGATTTACTGATAATGCTGTTCC
ACCTTTCTATTTCGGTTTATGCTGTTTCATAcatcatgaaaaatgttttc
cttttccAGATTTCGACGGACTNGGTTTATGCTGTTTCATAcatcatgaa
aaatgttttcctttttcaGATTTCGACGGACTGGTTAGAAGAGAAAATTA
CGGAAGACGAAGAGCGTGTCCAATCCATGGATATCGCTGCTTTCAACAAG
ATTTAAATTCTCATTCACCACAGCTTTATCGTTATTTCTTATCTTTATGT
ACATCTCGAATTTTGTCAATGAATATTAACAAACTGCTATTTCTATGTCA
ATTCGactttaattatttttattatccGCTATTTTAAAGGTATTCAGAAT
CATTTAAAAATCCTTCAAGTCTTCCCCTTTTTAGGCATCTCAGCGTCGAT
CGACTTTGGGCTGTGTGCAGTAATTGCTTTTGATAGCTTCCGAGTTCTGC
CATTTTCTGTTTGTATGAGTAAACAAACACCCACAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029135	XLOC_029135	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:164966..171752 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
333.747	331.31	215.152	233.766	73.842	61.6721	124.726	132.488	203.86	165.799	233.698	286.694	334.51	393.308	273.537	238.497	209.335	211.14	195.067	180.771	251.301	249.025	322.2	290.864	205.926	242.166	249.366	327.529	210.127	226.757

Blast

[Close]

BLAST of TCONS_00045566 vs. Swiss-Prot (Human)
Match: EF1B (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.112e-63
Identity = 130/224 (58.04%), Postives = 160/224 (71.43%), Query Frame = 1

Query:  241 FGDLKSAAGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHIRSYSCDEKKSFAS---ATGDHGVRGAEQAKKXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXLXXXXXXXXXXXTVIAKSSLLIDVKPWDDETDMKALEAEVRKIEAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTDWLEEKITEDEERVQSMDIAAFNKI 891
            FGDLKS AG++ LN +LADKSYIEGY+PSQADV VF A++S P  +  HALRWYNHI+SY   EK S      A G +G    E        +            D+EEE+EE K++REERLA+Y +KKA K  ++AKSS+L+DVKPWDDETDM  LE  VR I+A+GL+WG+SKL+PVGYGIKKLQI  V+ DDK+ TD LEE+IT  E+ VQSMD+AAFNKI
Sbjct:    3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYE-KEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225

The following BLAST results are available for this feature:

BLAST of TCONS_00045566 vs. Swiss-Prot (Human)

BLAST of TCONS_00045566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EF1B	1.112e-63	58.04	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2...	[more]

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TCONS_00045566 (transcript) - C. hemisphaerica