|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045563 ID=TCONS_00045563|Name=TCONS_00045563|organism=Clytia hemisphaerica|type=transcript|length=2533bp
ACTACTGGTTTAATTTGTCGTTGAATTCAGATGcctccacctccaccacc
tccgcCGGCAGCACCACCACCACCCAAAGCGTCGGCTACTGCAGTTGCAA
AACTAGGTGGAGGAGATGGAAATAAAGGACGGGGTGCTTTATTAAGTTCA
ATTCAAGGTGGTGCAAGGTTAAAGAAAGCAGTGACTAATGATAGAAGTGC
TCCTGTTACAGGAAaTGTGAAAAATGGACCCTCAGGAGGAGGAGGAGGGG
GAGGCAGTAGTGGAGGCGGAGGAGGAGGTGGGGGCAGTATGCCTGCCGGT
GGAGGTCTTGGAGGCCTTTTTGCTGGTGGTATGCCCAAACTTCGTTCTGC
TGGTGATCGCAGACCTGGAGGTGGAGGTGGAGCTGGTCCTCCAAAGTTTC
CACCTGGAAGAGGTAAGCCATCAGTTGGATCAGGTCCAAAACCACCACCA
TCTACTGGAGGCCCAAAGCCACCTGTCCCATCCGAAAACGCTAAACCTGC
ACCACCATCAGGAGGATTCAAACCTCTCCCGCCATCAGGAGGATTCAAAC
CTCCCCCACCAGGAAATCTTTCAAGGCCAGGTAATAAGCCTCCTCCACCT
AACAACAGGTCAGGAGGCGGTGGTTTCCCTCCACCACCACCAATGCGTAA
CGAGGCTCATTCAGCGCCTTCTTCGAGACCTCCCCCGCCATCAAAATCAA
GTGCGCCACCGCCGCCCCCAACGAGGAGTGATCAACCACCAGCACCTCCA
TCCAGTAGAGGAGGCCTTCCGCCTCCACCACCAAGAGGAGGCTCGCAACC
TTCGCCACCGGCTCGGGGACCATCAACACGTTCAGgaccaccacctccac
caccatcCTCAGCAAGGCCAAACATGCCACCACCACCTCCCCCAGATGCT
GTCTTATCTGGAGGTAATAATTTCGAGTCTCGATTCAACTTCCCGAAAGA
CATTCCAAACCCTCCACCTTATGGGAATGTATCGAAATCGTATCCAAGCA
GACATCCACGGAATACTGTCAAAGGTGGCGCACCTCCGAATAGATCAGCA
CCCGCACCGCCCGGTCGAGGAGCACCGCCACCCCCACCGCCTCCAGGAGG
AATGGGTGGTCCACCTCCTCCGCCGCCTCCAATGAGAAGGTAGAATATTT
CAACAATAGGTAGGGATTGTTTGCAATTTTGTTGGGTTGATCGAATGTCC
AAGGTGGTTACGTCTGCTGGTCGGTAtgtacaaattcaaaaatgatGATT
GTAATTAAATggaaaagatatttttgagaaatttatacgaTTATTGTTGT
TAAATGGAGTAGCATTACATACTTCATGTTCAAAAGGGTTCGTCAAAGCC
CTTCAAAAGTGAACCAGTATTAGACTTTAATAAATGACAATATTTCAAAT
GGTGAAATTATTGTCTACGATACTCtgttgattttttatatttctgaatt
gaaaaataaaggagatttttggaaaatctcttACAAATAAGTTGTcaatt
ttaattatattttttaaatattgtacAGTTGCTCTAAAATCACTCTTTGA
TGGATTTACTTATGAATGTAGTACCCTCTCGTGTGCATAATCGAGCTTAC
AAGAGTTAATACTTCGCATCCCAGATGCCCTTCCTTTGGGTGTACTAAAT
AGCCAATGACTCATCCAGAtgtataggccatttcacagtcgcaatacgta
atgggtaatcaggaccactgcgcccTAATGatgacttactattggtccaa
agttttgaaattttttaaagatttctgtGTCTAACCCACGGGAAACCGTT
ATCGGGGCGCAATCAgccctgattacccatgatccatttcgactgtgaaa
tggcctattgatGTAACTACAagtaatgtttttgattttttttggttgaC
TTAatcgtcaaaatttcaaaatttctttatgcATACACACAGTTTTAATC
CAGTtaaaaaaaaacgcaaaaagCAGATGCCTTGTTGGTTGTCATTTTGC
GAAatgattaaaattaaaattagagCTTGAGCTGAAAGTAATTTCTTCAC
Tctgtaaaaacattttttgcctgtattgaaagaaatcatttttgtaataa
aatcttagaaatatattttaaattttttgcctAGTTTTTTGTTCATTGTC
GCTATTATTATTACAGTATCATCATTAttataattattttgaattttttt
tttgtgaaaacgTGGAATTCATGAATCTTTAATATGAAACTTCTTTAGAA
ATTCTTCTTAGGACTGAAATTTATGAGGCCAGTGAAAATTTTGTTGAGCG
ACAATTCTATCAGGTTTGGTGAAATCCGTTTCTTATTTTGCCGTTCGTTT
CTATTcagttattttttgttgagatgGCGTACATATTGGgggcttttttt
tctttttcttctaattttttctgttttagatataaaataaaaatgtttgt
atACTGCTGCAGGTTCAATGAAAAAGGAATCTGTCATAGTTATTTTTGCC
ACTAAAATTATTTGAACTTTATACATAAACCAA Run BLAST on NCBI transcript from alignment at scaffold_1:101413..108213+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045563 ID=TCONS_00045563|Name=TCONS_00045563|organism=Clytia hemisphaerica|type=transcript|length=6801bp|location=Sequence derived from alignment at scaffold_1:101413..108213+ (Clytia hemisphaerica)
ACTACTGGTTTAATTTGTCGTTGAATTCAGATGcctccacctccaccacc
tccgcCGGCAGCACCACCACCACCCAAAGCGTCGGCTACTGCAGTTGCAA
AACTAGGTGGAGGAGATGGAAATAAAGGACGGGGTGCTTTATTAAGTTCA
ATTCAAGGTGGTGCAAGGTTAAAGAAAGCAGTGACTAATGATAGAAGTGC
TCCTGTTACAGGAAGTAAGCTTATTCCTAATAATCAGATCTACGATTTAG
AAACTCTTCCGGGTGACCTATGTAAAAGTATCAGGGTTTGATGGCTATAT
AATTTGGTTCAGTGAAGTCGAAGTTCACTTTTAAAGATGATTGCTCTTCG
CTTTGTACAACTTTTTCATGCTTAGACAATCTGCAAACCACCAAGCACAA
TAGTTCTAAAAGAAACTGTAGCGAagtgtttttacatttttcctgGTAAT
TATTTGGGGTTTCAATATCAAATATTTAGTAAGTTTAGTTCCTCAGAAGT
AACAATTTCTAGATGGAATTAGGGAAATGTGTTCTACTTTGagtattttg
tttcaaattccACCAGTCATAAACCTTGAGAtatattgaaattcaattct
TTCAACACTGAAAAACcttgttttttctcatttcagaTGTGAAAAATGGA
CCCTCAGGAGGAGGAGGAGGGGGAGGCAGTAGTGGAGGCGGAGGAGGAGG
TGGGGGCAGTATGCCTGCCGGTGGAGGTCTTGGAGGCCTTTTTGCTGGTG
GTATGCCCAAACTTCGTTCTGCTGGTGATCGCAGACCTGGAGGTGGAGGT
AAATGActtattgtttactttttattgacaataaatagaattgaaatcat
cCAGTCATTGTACAATGATattgtttttggacctaccccggtggaggtcc
tataaattaacctctgttcgtccgttcgttcgttaccaacttttctcgag
attggctcattagtttttcctgatttttggcacaatgatgtaaaatggta
atggCCAAAAtttgatggagcccgattttcgaaaaaatatatatttgggc
aaatttgggccaaaaactgcctaaaaatagggttttttggactttatgca
aaatcctgtcattactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTATTcaccttaaaa
aacggattttcgtattttggggaaattccctttaaccaaataagaaaata
tagcttttcttaatgttgactcattatttttttttgattttttgcacaat
gatgcaaaatggcaatgcctaaaatgtgacggagcccgatgctttaaaaa
agatttttttccggccgaaaatgccggaaatatgccagaaaaactggttt
tttctcaagattttatcattggttttttctgattttttgctcaaagatgc
gtattaacaatgcccaaaacatggcctagttcgatttttgagaaaatttt
ttttccggttgaaaatgccggaaatcgccgtgtttgccgattttcattgg
attttttccttatattcatttctatgctttttacacaaaaacattattga
taacaatgcacaccatcaagcatgactcaattgtcaataaaactgatttt
tgcgaccagaactttctatttattttttccctacaacccttccctgtccc
cccatcaacaatcaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgcgttatgcatt
ttcgctaaacgctatattttctgactgattttttttttcatttttctcct
cgcatcagcatctagcttgtttactCTATAGTGACTGGGTCAGCTCCCCC
AAGAACAAAGATATTGCCAGTTTAGGAAACCCCCTTCTcccctgaaaatg
aaaaaccttttaagcgcccctttgaattttcttttcgtCCCCTTCGCCCG
GTGTTTCTGAAACCATTATCTATGATTCACCTCTTGCAGAATCCCCCAaa
catatttcattttttctcccTCGCCCTGTTTCTTTGCAAACATCTTCCAG
CCTGGAATTAATAACTAATGTATGTTGGAACTACCTGGAGGACCTATAGA
TTAAagtcgttcgttcgttcgttcgttcgttcgttcattaTCACAAAAAT
GTGTAACCATAAACTTGATCGTGATTTAGCCCAATTTCCGAgtgataatt
tttttgagggtAAACTCGAccaaaaaacggttaaaaagggttttttggat
ttttttacgAAATTGGATCGTCAGTTATTTCTGATTTCTTGTACCAAAAT
AATGTATCATCAGTTGAGCACATCACAAATAACTGATTAACAGCTCAACT
CGTGATTGATTTAATCGTTTATATAGAgtttgaagtattttttttttagt
tttctgtTGATTagccaggtaggtccataaaagtatcacttgttaaaaCC
AGATTTATATATATGTATTTGTTGATTTTGAGTAGTTCACCAATGTAACG
TCAGTTTGGGTAGCAGGTGGCTCCAAGTTACCTAGGGCGTGGCGACCCTA
CCCTCTTGCGAGCCAATACACAAATCTTACGCATTGACTTATTTGGTAGC
ATAGATTGATACTTTCAACTCTACAGAGTGTGGCGACTCTGCCAATAGCA
AGCCGTAACGACAACTCAGCAACAACAGCAAAATCAACAATAAATCTGGT
AGCAAGAATTAACCTTCTCAGAGTATGGCGACTCTGCCAATAGCAAGCCG
CAACAGCAActcagcaacaacaacaaatcaACAACAAATTTGGTAGCAAG
AATTAACCTTCTCAGAGTGTGGCGACTCTGCCATTAGCAAGCCGTAACGA
CAACTCAGCAACAACAGCAAAATCAACAATAAATCTGGTAGCAAGAATTA
ACCTTATCAGAGTGTGGCGACAAACTACaacaatcaaaagatttttgtgg
aaTGGGTTGATTGATTTTAATGAATCTTGCCAATAACAAGCCAACCAACA
ACTACAGCAGACAGCAACAGCAGCGACAAACAACAACAGCAAATCTGTAG
CAAGAAATTGTAATTTTCAGACTTTGGCGACTGTAAATAGTGATGCTACA
ATACTAATTATTTTAAGTACAAACTTATTGACCTGTTTTACGAACGAACT
CATAACGGAAATAAAACGAAAATTTGACAAAGACGATGATGATGACTGAA
gatgatgatgaaaatgatgaagaaCAAATTTCGATATCTCAAACTCTCTA
AGAGTGATAATGATATTGATACCAAGTACACAAGAGACCTTTAAAGAGAC
GTCTCTACAAAGGAAATTAAGCAACCTTTGCTTTATGTGAGCTTTTTCTG
ACGACTACATTGTACATAATATTTTGAGCagggtttttcttttttgaata
aaagacGATTCTGATCGAAttcttttcattgcatttttaTAATTGAGAAT
CTCACCACGGTTACCAATTTATTCACCAGTTATTCTGATCTTTTTTAAAG
TAATCATATCATTAATgttccattttcatttttttttgtgcTAGGTGGAG
CTGGTCCTCCAAAGTTTCCACCTGGAAGAGGTAAGCCATCAGTTGGATCA
GGTCCAAAACCACCACCATCTACTGGAGGCCCAAAGCCACCTGTCCCATC
CGAAAACGCTAAACCTGCACCACCATCAGGAGGATTCAAACCTCTCCCGC
CATCAGGAGGATTCAAACCTCCCCCACCAGGAAATCTTTCAAGGCCAGGT
AATAAGCCTCCTCCACCTAACAACAGGTCAGGAGGCGGTGGTTTCCCTCC
ACCACCACCAATGCGTAACGAGGCTCATTCAGCGCCTTCTTCGAGACCTC
CCCCGCCATCAAAATCAAGTGCGCCACCGCCGCCCCCAACGAGGAGTGAT
CAACCACCAGCACCTCCATCCAGTAGAGGAGGCCTTCCGCCTCCACCACC
AAGAGGAGGCTCGCAACCTTCGCCACCGGCTCGGGGACCATCAACACGTT
CAGgaccaccacctccaccaccatcCTCAGCAAGGCCAAACATGCCACCA
CCACCTCCCCCAGGTAGAAGTGGCGGGCCACCACCACCGCCCACAAGAAG
TGGTCCTCCGCCGCCTCCACCTAGTAACAATAGGGGGAGCttaccaccac
caccacctgGAAGATCAGGACCTCCCTCCGACCAGGCACCTGCCCTTCCA
AATAGTAGAAGGCCATCTACACGCAGTGCTCCACCGCCACCACCACCTAA
CCAGAGAGTGTCAATAACGCGGTCAGAAGCTCCCAGCTCCTACGGTTCAA
GGGATCTACCACTTCCCCCACCACCTGCAAATAGAGGAGGAGGCGTTGCA
GAAACAGGACGCACTGGCTCAATCGGATTCCCTCCACCACCTCCCCCAGA
TGCTGTCTTATCTGGAGGTAAATGCTTTATTCTTCCTCATTGTTAATTAT
GATACCACGAAGTGGTAATCAAATGGCAATATTTCCTGGTAATAATTAAA
AGCCAATATAGTCTAATCGTCATAATATTCTGATATTCTAATGTCTTCAC
TGAATAGTTAAAAAAATGATGTGTATGCTTTTGATATGTATCAAAAATTC
TTTCTTCCAGGTAATAATTTCGAGTCTCGATTCAACTTCCCGAAAGACAT
TCCAAACCCTCCACCTTATGGGAATGTATCGAAATCGTATCCAAGCAGAC
ATCCACGGAATACTGTCAAAGGTAATACACTGTCAACTACTTTTTCTTCA
CAACTTTATAAAGATACTTTAGGGCATCCCTCAAAACAGCATCCCTCAAA
ACAGCACAAGTTTAATTAGGCGAGCAACTTGTTCTGGCGAGGGATTCAAC
AAAATTTGCAGAACTCTCCGAAATTACTTCTCAACGAAATAAGTTCTCTT
AAGGTGGTATAAGATTGTGAATTGGTACTTCGAAATTATCTTCACGATAC
TAACAGATACTAAAGGTGATTCAGTATGATGAATATGTTTTTGAAAGGAa
gatattattttgaaaaaaatttccttctttTGTCCTTAACAGGTGGCGCA
CCTCCGAATAGATCAGCACCCGCACCGCCCGGTCGAGGAGCACCGCCACC
CCCACCGCCTCCAGGAGGAATGGGTGGTCCACCTCCTCCGCCGCCTCCAA
TGAGAAGGTAGAATATTTCAACAATAGGTAGGGATTGTTTGCAATTTTGT
TGGGTTGATCGAATGTCCAAGGTGGTTACGTCTGCTGGTCGGTAtgtaca
aattcaaaaatgatGATTGTAATTAAATggaaaagatatttttgagaaat
ttatacgaTTATTGTTGTTAAATGGAGTAGCATTACATACTTCATGTTCA
AAAGGGTTCGTCAAAGCCCTTCAAAAGTGAACCAGTATTAGACTTTAATA
AATGACAATATTTCAAATGGTGAAATTATTGTCTACGATACTCtgttgat
tttttatatttctgaattgaaaaataaaggagatttttggaaaatctctt
ACAAATAAGTTGTcaattttaattatattttttaaatattgtacAGTTGC
TCTAAAATCACTCTTTGATGGATTTACTTATGAATGTAGTACCCTCTCGT
GTGCATAATCGAGCTTACAAGAGTTAATACTTCGCATCCCAGATGCCCTT
CCTTTGGGTGTACTAAATAGCCAATGACTCATCCAGAtgtataggccatt
tcacagtcgcaatacgtaatgggtaatcaggaccactgcgcccTAATGat
gacttactattggtccaaagttttgaaattttttaaagatttctgtGTCT
AACCCACGGGAAACCGTTATCGGGGCGCAATCAgccctgattacccatga
tccatttcgactgtgaaatggcctattgatGTAACTACAagtaatgtttt
tgattttttttggttgaCTTAatcgtcaaaatttcaaaatttctttatgc
ATACACACAGTTTTAATCCAGTtaaaaaaaaacgcaaaaagCAGATGCCT
TGTTGGTTGTCATTTTGCGAAatgattaaaattaaaattagagCTTGAGC
TGAAAGTAATTTCTTCACTctgtaaaaacattttttgcctgtattgaaag
aaatcatttttgtaataaaatcttagaaatatattttaaattttttgcct
AGTTTTTTGTTCATTGTCGCTATTATTATTACAGTATCATCATTAttata
attattttgaattttttttttgtgaaaacgTGGAATTCATGAATCTTTAA
TATGAAACTTCTTTAGAAATTCTTCTTAGGACTGAAATTTATGAGGCCAG
TGAAAATTTTGTTGAGCGACAATTCTATCAGGTTTGGTGAAATCCGTTTC
TTATTTTGCCGTTCGTTTCTATTcagttattttttgttgagatgGCGTAC
ATATTGGgggcttttttttctttttcttctaattttttctgttttagata
taaaataaaaatgtttgtatACTGCTGCAGGTTCAATGAAAAAGGAATCT
GTCATAGTTATTTTTGCCACTAAAATTATTTGAACTTTATACATAAACCA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045563-exon-scaffold_1-1491911889:101413..101626 | TCONS_00045563-exon-scaffold_1-1491911889:101413..101626 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:101413..101626 | TCONS_00045563-exon-scaffold_1-1510915933:101413..101626 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:101413..101626 | TCONS_00045563-exon-scaffold_1-1575043694:101413..101626 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1491911889:102049..102210 | TCONS_00045563-exon-scaffold_1-1491911889:102049..102210 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:102049..102210 | TCONS_00045563-exon-scaffold_1-1510915933:102049..102210 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:102049..102210 | TCONS_00045563-exon-scaffold_1-1575043694:102049..102210 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1491911889:105207..105725 | TCONS_00045563-exon-scaffold_1-1491911889:105207..105725 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:105207..105725 | TCONS_00045563-exon-scaffold_1-1510915933:105207..105725 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:105207..105725 | TCONS_00045563-exon-scaffold_1-1575043694:105207..105725 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1491911889:106062..106079 | TCONS_00045563-exon-scaffold_1-1491911889:106062..106079 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:106062..106079 | TCONS_00045563-exon-scaffold_1-1510915933:106062..106079 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:106062..106079 | TCONS_00045563-exon-scaffold_1-1575043694:106062..106079 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1491911889:106273..106383 | TCONS_00045563-exon-scaffold_1-1491911889:106273..106383 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:106273..106383 | TCONS_00045563-exon-scaffold_1-1510915933:106273..106383 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:106273..106383 | TCONS_00045563-exon-scaffold_1-1575043694:106273..106383 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1491911889:106705..108213 | TCONS_00045563-exon-scaffold_1-1491911889:106705..108213 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1510915933:106705..108213 | TCONS_00045563-exon-scaffold_1-1510915933:106705..108213 | Clytia hemisphaerica | exon |
| TCONS_00045563-exon-scaffold_1-1575043694:106705..108213 | TCONS_00045563-exon-scaffold_1-1575043694:106705..108213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:101413..108213 + |
Blast
The following BLAST results are available for this feature:
|
