TCONS_00045546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045546
Unique NameTCONS_00045546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045546 ID=TCONS_00045546|Name=TCONS_00045546|organism=Clytia hemisphaerica|type=transcript|length=518bp
CCCCCCtcaaaaagaccaaagaaaACGAAGTCTCAGTGCCCCAAAGTCAG
GTCCTGTCCGGTACTCGTGCTATAGAAATATTTAGACAATTTATACGAAA
AAAAGACCACGATTAAATCGCCAAATTGCCCAATTTTTATCACATGGGTA
AGGTTTGTCCCACAGTGACTTTGTGTCTCTGAATTCTTCCCAACGTGATT
CAACAACTTTAATAAAATGTTCTATTTGTTCTTTGCATGGGTAACTTCTA
AAGTCTGATGGAGCAAAATTATCACAGTAATGCATGTATCCATCAGCAAA
GAAGTTATAGTTTTGTTCTTGATAGTTTAAACAGTCTTGTCTCATTATAT
TTAATCGAAACATCATCGCTGCCCATTCATGTTCATCAAGAAAGAAAGAC
CAAGCAATATGGCCGTAAAAGTAAGTCTCCAAAGCTTCACTAACCTTTGT
GACGGTGGTAGATGGAGATTGAAGGAAGTACTTTTCTCTTGTTGAAATGA
ATTTGTCAAAGTTATTCT
Run BLAST on NCBI

protein sequence of TCONS_00045546-protein

>TCONS_00045546-protein ID=TCONS_00045546-protein|Name=TCONS_00045546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
NNFDKFISTREKYFLQSPSTTVTKVSEALETYFYGHIAWSFFLDEHEWAA
MMFRLNIMRQDCLNYQEQNYNFFADGYMHYCDNFAPSDFRSYPCKEQIEH
FIKVVESRWEEFRDTKSLWDKPYPCDKNWAIWRFNRGLFFV
Run BLAST on NCBI

transcript from alignment at sc0008256:1..518

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045546 ID=TCONS_00045546|Name=TCONS_00045546|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0008256:1..518 (Clytia hemisphaerica)
AGAATAACTTTGACAAATTCATTTCAACAAGAGAAAAGTACTTCCTTCAA
TCTCCATCTACCACCGTCACAAAGGTTAGTGAAGCTTTGGAGACTTACTT
TTACGGCCATATTGCTTGGTCTTTCTTTCTTGATGAACATGAATGGGCAG
CGATGATGTTTCGATTAAATATAATGAGACAAGACTGTTTAAACTATCAA
GAACAAAACTATAACTTCTTTGCTGATGGATACATGCATTACTGTGATAA
TTTTGCTCCATCAGACTTTAGAAGTTACCCATGCAAAGAACAAATAGAAC
ATTTTATTAAAGTTGTTGAATCACGTTGGGAAGAATTCAGAGACACAAAG
TCACTGTGGGACAAACCTTACCCATGTGATAAAAATTGGGCAATTTGGCG
ATTTAATCGTGGTCTTTTTTTCGTATAAATTGTCTAAATATTTCTATAGC
ACGAGTACCGGACAGGACCTGACTTTGGGGCACTGAGACTTCGTtttctt
tggtctttttgaGGGGGG

Coding sequence (CDS) from alignment at sc0008256:1..518

>TCONS_00045546 ID=TCONS_00045546|Name=TCONS_00045546|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0008256:1..518 (Clytia hemisphaerica)
AATAACTTTGACAAATTCATTTCAACAAGAGAAAAGTACTTCCTTCAATC
TCCATCTACCACCGTCACAAAGGTTAGTGAAGCTTTGGAGACTTACTTTT
ACGGCCATATTGCTTGGTCTTTCTTTCTTGATGAACATGAATGGGCAGCG
ATGATGTTTCGATTAAATATAATGAGACAAGACTGTTTAAACTATCAAGA
ACAAAACTATAACTTCTTTGCTGATGGATACATGCATTACTGTGATAATT
TTGCTCCATCAGACTTTAGAAGTTACCCATGCAAAGAACAAATAGAACAT
TTTATTAAAGTTGTTGAATCACGTTGGGAAGAATTCAGAGACACAAAGTC
ACTGTGGGACAAACCTTACCCATGTGATAAAAATTGGGCAATTTGGCGAT
TTAATCGTGGTCTTTTTTTCGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029123XLOC_029123Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045546-proteinTCONS_00045546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045546-exon-sc0008256-1491911889:1..518TCONS_00045546-exon-sc0008256-1491911889:1..518Clytia hemisphaericaexon
TCONS_00045546-exon-sc0008256-1510915933:1..518TCONS_00045546-exon-sc0008256-1510915933:1..518Clytia hemisphaericaexon
TCONS_00045546-exon-sc0008256-1575043694:1..518TCONS_00045546-exon-sc0008256-1575043694:1..518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008256supercontigsc0008256:1..518 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06666	4.41768	1.94999	3.56115	89.4874	54.8652	13.9587	14.0957	2.03179	4.79373	1.27955	0.841125	0.305439	0.317201	0.195587	1.32933	3.01668	2.29692	0	0.127717	1.66514	0.812197	1.84302	3.35115	0	0.440067	0.629735	0.336035	3.88847	4.41444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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