TCONS_00045529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045529
Unique NameTCONS_00045529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045529 ID=TCONS_00045529|Name=TCONS_00045529|organism=Clytia hemisphaerica|type=transcript|length=491bp
CGTCACGCCGTTGGTCGAAGTGGAGCTCGGAGATCTGCAGACGGATACAA
AGTGGTTCGGTTTACCACACTTTCTGCAATTCTTTCCCCACGCTGGGCAC
GACGATCGTCCTTTTGGGTGAAGGGTTTGACCACAtccagagcatttttt
cgatttcGAAGGGTCGAGTCTTTTGTTCTCACGACGGTATGCATCGCGAT
CTGATATGGGTGCGATTTCACTTGGTGGGCGGAAGTGAGTTGTTGCCCTT
TCGGTCGATTCGAGGGCAAGGAGGCGGGTAGTAACTTGCTCGAGAGTTTT
TAGTACTTCCATCTCGGACAATATTTTGCTTTGGTGGGATGCGTTTCTGA
TGCCAGCGATGAGTTGAGATTTCACCATGTCCTCTGCGAAGGATGCCATG
CAAGTGTTTTGGTTGCATGACCCTTTGGTGGTGAATGCACATAACATAGC
TTGGGCCTTTAGTCGAGAGATAAAATTAGTAATACTCTCAC
Run BLAST on NCBI

protein sequence of TCONS_00045529-protein

>TCONS_00045529-protein ID=TCONS_00045529-protein|Name=TCONS_00045529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
ESITNFISRLKAQAMLCAFTTKGSCNQNTCMASFAEDMVKSQLIAGIRNA
SHQSKILSEMEVLKTLEQVTTRLLALESTERATTHFRPPSEIAPISDRDA
YRRENKRLDPSKSKKCSGCGQTLHPKGRSSCPAWGKNCRKCGKPNHFVSV
CRSPSSTSTNGVT
Run BLAST on NCBI

transcript from alignment at sc0008197:76..566

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045529 ID=TCONS_00045529|Name=TCONS_00045529|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0008197:76..566 (Clytia hemisphaerica)
GTGAGAGTATTACTAATTTTATCTCTCGACTAAAGGCCCAAGCTATGTTA
TGTGCATTCACCACCAAAGGGTCATGCAACCAAAACACTTGCATGGCATC
CTTCGCAGAGGACATGGTGAAATCTCAACTCATCGCTGGCATCAGAAACG
CATCCCACCAAAGCAAAATATTGTCCGAGATGGAAGTACTAAAAACTCTC
GAGCAAGTTACTACCCGCCTCCTTGCCCTCGAATCGACCGAAAGGGCAAC
AACTCACTTCCGCCCACCAAGTGAAATCGCACCCATATCAGATCGCGATG
CATACCGTCGTGAGAACAAAAGACTCGACCCTTCgaaatcgaaaaaatgc
tctggaTGTGGTCAAACCCTTCACCCAAAAGGACGATCGTCGTGCCCAGC
GTGGGGAAAGAATTGCAGAAAGTGTGGTAAACCGAACCACTTTGTATCCG
TCTGCAGATCTCCGAGCTCCACTTCGACCAACGGCGTGACG

Coding sequence (CDS) from alignment at sc0008197:76..566

>TCONS_00045529 ID=TCONS_00045529|Name=TCONS_00045529|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0008197:76..566 (Clytia hemisphaerica)
GAGAGTATTACTAATTTTATCTCTCGACTAAAGGCCCAAGCTATGTTATG
TGCATTCACCACCAAAGGGTCATGCAACCAAAACACTTGCATGGCATCCT
TCGCAGAGGACATGGTGAAATCTCAACTCATCGCTGGCATCAGAAACGCA
TCCCACCAAAGCAAAATATTGTCCGAGATGGAAGTACTAAAAACTCTCGA
GCAAGTTACTACCCGCCTCCTTGCCCTCGAATCGACCGAAAGGGCAACAA
CTCACTTCCGCCCACCAAGTGAAATCGCACCCATATCAGATCGCGATGCA
TACCGTCGTGAGAACAAAAGACTCGACCCTTCgaaatcgaaaaaatgctc
tggaTGTGGTCAAACCCTTCACCCAAAAGGACGATCGTCGTGCCCAGCGT
GGGGAAAGAATTGCAGAAAGTGTGGTAAACCGAACCACTTTGTATCCGTC
TGCAGATCTCCGAGCTCCACTTCGACCAACGGCGTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029106XLOC_029106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045529-exon-sc0008197-1491911889:76..566TCONS_00045529-exon-sc0008197-1491911889:76..566Clytia hemisphaericaexon
TCONS_00045529-exon-sc0008197-1510915933:76..566TCONS_00045529-exon-sc0008197-1510915933:76..566Clytia hemisphaericaexon
TCONS_00045529-exon-sc0008197-1575043694:76..566TCONS_00045529-exon-sc0008197-1575043694:76..566Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045529-proteinTCONS_00045529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008197supercontigsc0008197:76..566 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.391862	0.427337	0.39901	1.35727	0.402199	0.646982	0.454273	0.636094	0.52527	1.39137	0.418936	0.371048	0.926361	0.422972	0.189071	0.472216	0.387205	0	0	0.121638	0.333087	0.144249	0.131143	0.67537	0.12055	0	0.124429	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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