TCONS_00045489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045489
Unique NameTCONS_00045489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045489 ID=TCONS_00045489|Name=TCONS_00045489|organism=Clytia hemisphaerica|type=transcript|length=244bp
GTCTGAACAAAAGTtgatattttccttcaaaaatacgaaaaatacAATCA
GAAAATCCCTTTTTCGTAGAGAGATTTCAAAGGGATAAAAATCACATACG
AATATTTGATGTATCTTCCAAGTTGAGTCAACTGTGCTCCCTCATTCGTG
AAATGACAGGCGAAAAGTAACAAGTTTCGTGGTTGCACTTGCCATGCAAA
TCTCATAAACAAACCAGAATAGATACACAAAgctgaaaaagaaa
Run BLAST on NCBI

transcript from alignment at sc0008043:367..610

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045489 ID=TCONS_00045489|Name=TCONS_00045489|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0008043:367..610 (Clytia hemisphaerica)
tttctttttcagcTTTGTGTATCTATTCTGGTTTGTTTATGAGATTTGCA
TGGCAAGTGCAACCACGAAACTTGTTACTTTTCGCCTGTCATTTCACGAA
TGAGGGAGCACAGTTGACTCAACTTGGAAGATACATCAAATATTCGTATG
TGATTTTTATCCCTTTGAAATCTCTCTACGAAAAAGGGATTTTCTGATTg
tatttttcgtatttttgaaggaaaatatcaACTTTTGTTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029066XLOC_029066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045489-exon-sc0008043-1491911889:367..610TCONS_00045489-exon-sc0008043-1491911889:367..610Clytia hemisphaericaexon
TCONS_00045489-exon-sc0008043-1510915933:367..610TCONS_00045489-exon-sc0008043-1510915933:367..610Clytia hemisphaericaexon
TCONS_00045489-exon-sc0008043-1575043694:367..610TCONS_00045489-exon-sc0008043-1575043694:367..610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008043supercontigsc0008043:367..610 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.714	107.751	155.67	177.527	1.13748	1.79771	2.16886	1.01523	43.3579	51.945	45.2917	40.4463	37.0242	29.7114	44.064	41.6335	100.045	79.179	18.8294	17.8271	52.1937	27.4472	61.8957	54.5136	0.905609	0.808235	55.5159	35.7957	42.129	28.6152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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