TCONS_00045470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045470
Unique NameTCONS_00045470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045470 ID=TCONS_00045470|Name=TCONS_00045470|organism=Clytia hemisphaerica|type=transcript|length=356bp
TATACAAGGGTCTGGTATTTTCTTTGCAGACATTTCCAGTACAACAGTGG
AGCTTTCAATGAACAAACAATTCATCCCTGCATATACTGAACCTTCGTCC
GATGAATATCAAAAGTTAGCAAAAGAAGTCAAAGCAGCAGTCAGTGAAGG
TTTAGGGAATTCACAGCAAGGCAGGCGACCAATTGTTGCAATCCGTGGCT
TCAAGGAGGGGAGTGTTATCGCGTTGGTACAACTCTTTTTTGCAAATGTG
ACACAAGTGGATCGGAAGTCTTTCTGTTCGTCAGGTGATTCCCTGATCTC
AAACCTACAAGGAATCACCACTCTCGGAATCAATAACATCAAAACGATAA
CTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00045470-protein

>TCONS_00045470-protein ID=TCONS_00045470-protein|Name=TCONS_00045470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
IQGSGIFFADISSTTVELSMNKQFIPAYTEPSSDEYQKLAKEVKAAVSEG
LGNSQQGRRPIVAIRGFKEGSVIALVQLFFANVTQVDRKSFCSSGDSLIS
NLQGITTLGINNIKTITQ
Run BLAST on NCBI

transcript from alignment at sc0007950:5..560+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045470 ID=TCONS_00045470|Name=TCONS_00045470|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at sc0007950:5..560+ (Clytia hemisphaerica)
TATACAAGGGTCTGGTATTTTCTTTGCAGACATTTCCAGTACAACAGTGG
AGCTTTCAATGAACAAACAATTCATCCCTGCATATACTGAACCTTCGTCC
GATGAATATCAAAAGTTAGCAAAAGAAGTCAAAGCAGCAGTCAGTGAAGG
TTTAGGGAATTCACAGCAAGGCAGGCGACCAATTGTTGCAATCCGTGGCT
TCAAGTAAACTTTTATTCTCGTGTAATGCATAGTATGCCTATGAGGTTGG
AAGGGGGCTTAGACAAATGATTTAGTAGGAGTTACGTAGGACTACTTTTT
GAAAGAAGGATAATAACTCGTTAATTCTTTCACAGGACGACCTTTCAATT
GAAGATGTGTAGAGTTATAGTTGATAATCGGATTTTCCAATCATATATTT
TTAGGGAGGGGAGTGTTATCGCGTTGGTACAACTCTTTTTTGCAAATGTG
ACACAAGTGGATCGGAAGTCTTTCTGTTCGTCAGGTGATTCCCTGATCTC
AAACCTACAAGGAATCACCACTCTCGGAATCAATAACATCAAAACGATAA
CTCAAG

Coding sequence (CDS) from alignment at sc0007950:5..560+

>TCONS_00045470 ID=TCONS_00045470|Name=TCONS_00045470|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0007950:5..560+ (Clytia hemisphaerica)
ATACAAGGGTCTGGTATTTTCTTTGCAGACATTTCCAGTACAACAGTGGA
GCTTTCAATGAACAAACAATTCATCCCTGCATATACTGAACCTTCGTCCG
ATGAATATCAAAAGTTAGCAAAAGAAGTCAAAGCAGCAGTCAGTGAAGGT
TTAGGGAATTCACAGCAAGGCAGGCGACCAATTGTTGCAATCCGTGGCTT
CAAGGAGGGGAGTGTTATCGCGTTGGTACAACTCTTTTTTGCAAATGTGA
CACAAGTGGATCGGAAGTCTTTCTGTTCGTCAGGTGATTCCCTGATCTCA
AACCTACAAGGAATCACCACTCTCGGAATCAATAACATCAAAACGATAAC
TCAAATACAAGGGTCTGGTATTTTCTTTGCAGACATTTCCAGTACAACAG
TGGAGCTTTCAATGAACAAACAATTCATCCCTGCATATACTGAACCTTCG
TCCGATGAATATCAAAAGTTAGCAAAAGAAGTCAAAGCAGCAGTCAGTGA
AGGTTTAGGGAATTCACAGCAAGGCAGGCGACCAATTGTTGCAATCCGTG
GCTTCAAGGAGGGGAGTGTTATCGCGTTGGTACAACTCTTTTTTGCAAAT
GTGACACAAGTGGATCGGAAGTCTTTCTGTTCGTCAGGTGATTCCCTGAT
CTCAAACCTACAAGGAATCACCACTCTCGGAATCAATAACATCAAAACGA
TAACTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029047XLOC_029047Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045470-proteinTCONS_00045470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045470-exon-sc0007950-1491911889:5..208TCONS_00045470-exon-sc0007950-1491911889:5..208Clytia hemisphaericaexon
TCONS_00045470-exon-sc0007950-1510915933:5..208TCONS_00045470-exon-sc0007950-1510915933:5..208Clytia hemisphaericaexon
TCONS_00045470-exon-sc0007950-1575043694:5..208TCONS_00045470-exon-sc0007950-1575043694:5..208Clytia hemisphaericaexon
TCONS_00045470-exon-sc0007950-1491911889:409..560TCONS_00045470-exon-sc0007950-1491911889:409..560Clytia hemisphaericaexon
TCONS_00045470-exon-sc0007950-1510915933:409..560TCONS_00045470-exon-sc0007950-1510915933:409..560Clytia hemisphaericaexon
TCONS_00045470-exon-sc0007950-1575043694:409..560TCONS_00045470-exon-sc0007950-1575043694:409..560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007950supercontigsc0007950:5..560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93076	2.35349	1.09305	0.267345	0	0	0.620574	0.871461	0	0	0.244515	0.160734	0.642044	0	0.411131	2.20603	6.52237	2.97121	0.256555	0.268466	3.50019	4.4389	1.66033	4.78002	18.9159	17.3445	15.8847	23.663	1.60725	1.09169
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000082SEA_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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