TCONS_00045466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045466
Unique NameTCONS_00045466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045466 ID=TCONS_00045466|Name=TCONS_00045466|organism=Clytia hemisphaerica|type=transcript|length=377bp
TGCAGGAAAATGGAGGAGATAATGGAAGACTTTAAAAAGAAGATGAGATA
TCAACTTGCCACCTTCAAACAACCAGACGGTGAAGTCCCGTCAGACCcaa
aagaaaacattcgaaatagAGCACTTTCAGGCGGTGCTGATCAACGCCAT
CGCGACCGAGCTCAATCGAATGAAAAAGCCACGAAACCACCGCGAAAGAA
ACAAAGCGGAACTTACAAACTCGAAGTTCAAAAAAGTATTGATACTCTTG
ATACTCAAATTAAACCTATTGATAGCCAGCAACCTTCTGCCCATGTCGTA
CCTTCTAAAAGTCAAGCCGCCCCTCAGGTTAAGCGGCTAGCGCCCACCGT
TCCTAAAGTCAAACGACAGGCACCAGT
Run BLAST on NCBI

protein sequence of TCONS_00045466-protein

>TCONS_00045466-protein ID=TCONS_00045466-protein|Name=TCONS_00045466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
CRKMEEIMEDFKKKMRYQLATFKQPDGEVPSDPKENIRNRALSGGADQRH
RDRAQSNEKATKPPRKKQSGTYKLEVQKSIDTLDTQIKPIDSQQPSAHVV
PSKSQAAPQVKRLAPTVPKVKRQAP
Run BLAST on NCBI

transcript from alignment at sc0007937:1..377

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045466 ID=TCONS_00045466|Name=TCONS_00045466|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at sc0007937:1..377 (Clytia hemisphaerica)
ACTGGTGCCTGTCGTTTGACTTTAGGAACGGTGGGCGCTAGCCGCTTAAC
CTGAGGGGCGGCTTGACTTTTAGAAGGTACGACATGGGCAGAAGGTTGCT
GGCTATCAATAGGTTTAATTTGAGTATCAAGAGTATCAATACTTTTTTGA
ACTTCGAGTTTGTAAGTTCCGCTTTGTTTCTTTCGCGGTGGTTTCGTGGC
TTTTTCATTCGATTGAGCTCGGTCGCGATGGCGTTGATCAGCACCGCCTG
AAAGTGCTctatttcgaatgttttcttttgGGTCTGACGGGACTTCACCG
TCTGGTTGTTTGAAGGTGGCAAGTTGATATCTCATCTTCTTTTTAAAGTC
TTCCATTATCTCCTCCATTTTCCTGCA

Coding sequence (CDS) from alignment at sc0007937:1..377

>TCONS_00045466 ID=TCONS_00045466|Name=TCONS_00045466|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0007937:1..377 (Clytia hemisphaerica)
TGGTGCCTGTCGTTTGACTTTAGGAACGGTGGGCGCTAGCCGCTTAACCT
GAGGGGCGGCTTGACTTTTAGAAGGTACGACATGGGCAGAAGGTTGCTGG
CTATCAATAGGTTTAATTTGAGTATCAAGAGTATCAATACTTTTTTGAAC
TTCGAGTTTGTAAGTTCCGCTTTGTTTCTTTCGCGGTGGTTTCGTGGCTT
TTTCATTCGATTGAGCTCGGTCGCGATGGCGTTGATCAGCACCGCCTGAA
AGTGCTctatttcgaatgttttcttttgGGTCTGACGGGACTTCACCGTC
TGGTTGTTTGAAGGTGGCAAGTTGATATCTCATCTTCTTTTTAAAGTCTT
CCATTATCTCCTCCATTTTCCTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029043XLOC_029043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045466-exon-sc0007937-1491911889:1..377TCONS_00045466-exon-sc0007937-1491911889:1..377Clytia hemisphaericaexon
TCONS_00045466-exon-sc0007937-1510915933:1..377TCONS_00045466-exon-sc0007937-1510915933:1..377Clytia hemisphaericaexon
TCONS_00045466-exon-sc0007937-1575043694:1..377TCONS_00045466-exon-sc0007937-1575043694:1..377Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045466-proteinTCONS_00045466-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007937supercontigsc0007937:1..377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.2295	26.9769	13.8681	11.2285	27.9088	27.0048	36.9242	34.568	30.0744	40.7788	24.1764	18.9868	29.4939	23.9204	21.9441	24.5789	41.3763	33.7975	13.6936	19.4974	23.2763	20.6153	21.0654	23.7743	38.3176	36.8281	15.9261	9.27097	17.5793	20.0597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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