TCONS_00045450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045450
Unique NameTCONS_00045450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045450 ID=TCONS_00045450|Name=TCONS_00045450|organism=Clytia hemisphaerica|type=transcript|length=689bp
aaaaaaaagcgtgtattttaagattttctgggtgaattttggggaaattg
agtcaaattttgtgtatttttttgcAATCTTCTTCAGATGGAGAAATTTC
ACACCACAACCACAACAATCACAACTAAAAAattgaatcataaaaaaatc
gGAGAGAAAATCATCAATGAAAGAATGCATGCTATACAATATAAGCATAC
AAACTCTCACTTGACAAATTTCACTGCAACAAAAGTGCATGCTGGGAACG
CCACGTGGGCTGCTGCCAGTCTCTTTTTCTTGTGCGGAATTTTAGTCAGT
TGGTTAATATACACGAAATTGTATTCCAAAAATGATGATAAGCCACAGAC
TTACGACTACCGTCAAGTTTATGATGAAAATGACTTATATGGGGTACCGG
GCAACTCGTTCTCCCGTACACCCCGTTTCAACTTGCTGAAAAGTAGTCAA
AGGATCATCGATATTTTCAAGACGCCCTGTAATCAGACTAAATATGAAAG
GAAGCTGGATTCATTGAGTTCCGTTAATTTGATGGTCCCCATAAATGAGG
ACGAGGAGGAATATGATGATTGACAACCCGATAATCCGATTGTTTAACCC
GACAAACTTTTCAATAGCCATTCATCTTTctaatcattttgatttttctt
ttggaatttttcacaacgtaacgcccccccccccccccc
Run BLAST on NCBI

protein sequence of TCONS_00045450-protein

>TCONS_00045450-protein ID=TCONS_00045450-protein|Name=TCONS_00045450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEKFHTTTTTITTKKLNHKKIGEKIINERMHAIQYKHTNSHLTNFTATKV
HAGNATWAAASLFFLCGILVSWLIYTKLYSKNDDKPQTYDYRQVYDENDL
YGVPGNSFSRTPRFNLLKSSQRIIDIFKTPCNQTKYERKLDSLSSVNLMV
PINEDEEEYDD
Run BLAST on NCBI

transcript from alignment at sc0007869:3..691

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045450 ID=TCONS_00045450|Name=TCONS_00045450|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0007869:3..691 (Clytia hemisphaerica)
ggggggggggggggggcgttacgttgtgaaaaattccaaaagaaaaatca
aaatgattagAAAGATGAATGGCTATTGAAAAGTTTGTCGGGTTAAACAA
TCGGATTATCGGGTTGTCAATCATCATATTCCTCCTCGTCCTCATTTATG
GGGACCATCAAATTAACGGAACTCAATGAATCCAGCTTCCTTTCATATTT
AGTCTGATTACAGGGCGTCTTGAAAATATCGATGATCCTTTGACTACTTT
TCAGCAAGTTGAAACGGGGTGTACGGGAGAACGAGTTGCCCGGTACCCCA
TATAAGTCATTTTCATCATAAACTTGACGGTAGTCGTAAGTCTGTGGCTT
ATCATCATTTTTGGAATACAATTTCGTGTATATTAACCAACTGACTAAAA
TTCCGCACAAGAAAAAGAGACTGGCAGCAGCCCACGTGGCGTTCCCAGCA
TGCACTTTTGTTGCAGTGAAATTTGTCAAGTGAGAGTTTGTATGCTTATA
TTGTATAGCATGCATTCTTTCATTGATGATTTTCTCTCcgatttttttat
gattcaatTTTTTAGTTGTGATTGTTGTGGTTGTGGTGTGAAATTTCTCC
ATCTGAAGAAGATTgcaaaaaaatacacaaaatttgactcaatttcccca
aaattcacccagaaaatcttaaaatacacgctttttttt

Coding sequence (CDS) from alignment at sc0007869:3..691

>TCONS_00045450 ID=TCONS_00045450|Name=TCONS_00045450|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0007869:3..691 (Clytia hemisphaerica)
TCAATCATCATATTCCTCCTCGTCCTCATTTATGGGGACCATCAAATTAA
CGGAACTCAATGAATCCAGCTTCCTTTCATATTTAGTCTGATTACAGGGC
GTCTTGAAAATATCGATGATCCTTTGACTACTTTTCAGCAAGTTGAAACG
GGGTGTACGGGAGAACGAGTTGCCCGGTACCCCATATAAGTCATTTTCAT
CATAAACTTGACGGTAGTCGTAAGTCTGTGGCTTATCATCATTTTTGGAA
TACAATTTCGTGTATATTAACCAACTGACTAAAATTCCGCACAAGAAAAA
GAGACTGGCAGCAGCCCACGTGGCGTTCCCAGCATGCACTTTTGTTGCAG
TGAAATTTGTCAAGTGAGAGTTTGTATGCTTATATTGTATAGCATGCATT
CTTTCATTGATGATTTTCTCTCcgatttttttatgattcaatTTTTTAGT
TGTGATTGTTGTGGTTGTGGTGTGAAATTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029028XLOC_029028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045450-proteinTCONS_00045450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045450-exon-sc0007869-1491911889:3..691TCONS_00045450-exon-sc0007869-1491911889:3..691Clytia hemisphaericaexon
TCONS_00045450-exon-sc0007869-1510915933:3..691TCONS_00045450-exon-sc0007869-1510915933:3..691Clytia hemisphaericaexon
TCONS_00045450-exon-sc0007869-1575043694:3..691TCONS_00045450-exon-sc0007869-1575043694:3..691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007869supercontigsc0007869:3..691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.904	27.1726	58.8319	60.5872	33.2913	27.1736	27.3673	30.7808	20.5538	19.2873	17.8221	14.5706	14.3045	13.6302	13.1785	13.4219	12.1513	14.6727	10.1355	12.1682	12.0057	11.7119	22.4577	22.3435	23.172	23.0176	10.3375	8.22026	16.0792	20.3105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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