TCONS_00045441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045441
Unique NameTCONS_00045441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045441 ID=TCONS_00045441|Name=TCONS_00045441|organism=Clytia hemisphaerica|type=transcript|length=609bp
CCTAATTTGGAAATATTTAAGTGAATATCATAGCATGAATTGTTGAATGG
AAATTGATGCATTATGGAGTTTGcatctgtattataaatatgaTCCAATA
GGTCCCAATTATATTGAAATCCACTCAAATCAAATGCCGTAAATTGACTT
TTGATTTCAACTGGATAGGCACAATCAAACTTGACAGCATTGTCGGGTAT
GTTGGAAGGTGTTTTCGTAGATTCAAAGTCGAATTGAGGTAAGATAAGTA
TTTTCTCAATGGTCGTAAAGTAGTTTCCGTTTTGTAAGGTAAAATTGNAG
ATAAGTATTTTCTCAATGGTCGTAAAGTAGTTTCCGTTTTGTAAGGTAAC
ATTAAGCGTATAGATTTTGCTTGCCAAGAAACTGTGATCTATAATGAGTG
TGTTTGTTTGTTGGTCAAAAGTGACATTTGGATAAAAATATTGGTTGGTT
TGAATACCATTTTCATCGAATTCTTGAATTCCCAAACCATTAAATTGCTC
AACATTTTCGAACTGTTCAAAATGTAAAATGTAGGTTTCATTGATGTAGG
TCGAATGTGAGATACTGGCAACAATCATTGTTATATTGATTGATATGGAC
TGGTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00045441-protein

>TCONS_00045441-protein ID=TCONS_00045441-protein|Name=TCONS_00045441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
LNQSISINITMIVASISHSTYINETYILHFEQFENVEQFNGLGIQEFDEN
GIQTNQYFYPNVTFDQQTNTLIIDHSFLASKIYTLNVTLQNGNYFTTIEK
ILIXNFTLQNGNYFTTIEKILILPQFDFESTKTPSNIPDNAVKFDCAYPV
EIKSQFTAFDLSGFQYNWDLLDHIYNTDANSIMHQFPFNNSCYDIHLNIS
KL
Run BLAST on NCBI

transcript from alignment at sc0007832:99..707

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045441 ID=TCONS_00045441|Name=TCONS_00045441|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0007832:99..707 (Clytia hemisphaerica)
TTTAAACCAGTCCATATCAATCAATATAACAATGATTGTTGCCAGTATCT
CACATTCGACCTACATCAATGAAACCTACATTTTACATTTTGAACAGTTC
GAAAATGTTGAGCAATTTAATGGTTTGGGAATTCAAGAATTCGATGAAAA
TGGTATTCAAACCAACCAATATTTTTATCCAAATGTCACTTTTGACCAAC
AAACAAACACACTCATTATAGATCACAGTTTCTTGGCAAGCAAAATCTAT
ACGCTTAATGTTACCTTACAAAACGGAAACTACTTTACGACCATTGAGAA
AATACTTATCTNCAATTTTACCTTACAAAACGGAAACTACTTTACGACCA
TTGAGAAAATACTTATCTTACCTCAATTCGACTTTGAATCTACGAAAACA
CCTTCCAACATACCCGACAATGCTGTCAAGTTTGATTGTGCCTATCCAGT
TGAAATCAAAAGTCAATTTACGGCATTTGATTTGAGTGGATTTCAATATA
ATTGGGACCTATTGGAtcatatttataatacagatgCAAACTCCATAATG
CATCAATTTCCATTCAACAATTCATGCTATGATATTCACTTAAATATTTC
CAAATTAGG

Coding sequence (CDS) from alignment at sc0007832:99..707

>TCONS_00045441 ID=TCONS_00045441|Name=TCONS_00045441|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0007832:99..707 (Clytia hemisphaerica)
TTAAACCAGTCCATATCAATCAATATAACAATGATTGTTGCCAGTATCTC
ACATTCGACCTACATCAATGAAACCTACATTTTACATTTTGAACAGTTCG
AAAATGTTGAGCAATTTAATGGTTTGGGAATTCAAGAATTCGATGAAAAT
GGTATTCAAACCAACCAATATTTTTATCCAAATGTCACTTTTGACCAACA
AACAAACACACTCATTATAGATCACAGTTTCTTGGCAAGCAAAATCTATA
CGCTTAATGTTACCTTACAAAACGGAAACTACTTTACGACCATTGAGAAA
ATACTTATCTNCAATTTTACCTTACAAAACGGAAACTACTTTACGACCAT
TGAGAAAATACTTATCTTACCTCAATTCGACTTTGAATCTACGAAAACAC
CTTCCAACATACCCGACAATGCTGTCAAGTTTGATTGTGCCTATCCAGTT
GAAATCAAAAGTCAATTTACGGCATTTGATTTGAGTGGATTTCAATATAA
TTGGGACCTATTGGAtcatatttataatacagatgCAAACTCCATAATGC
ATCAATTTCCATTCAACAATTCATGCTATGATATTCACTTAAATATTTCC
AAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029019XLOC_029019Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045441-proteinTCONS_00045441-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045441-exon-sc0007832-1491911889:99..707TCONS_00045441-exon-sc0007832-1491911889:99..707Clytia hemisphaericaexon
TCONS_00045441-exon-sc0007832-1510915933:99..707TCONS_00045441-exon-sc0007832-1510915933:99..707Clytia hemisphaericaexon
TCONS_00045441-exon-sc0007832-1575043694:99..707TCONS_00045441-exon-sc0007832-1575043694:99..707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007832supercontigsc0007832:99..707 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134195	0.158017	0.121947	0	0.119609	0.136257	0	0.125849	0	0	0	0	0.351143	0.145292	0.279351	0.184673	0	0	1.17779	1.16298	0.308974	0.721831	0.263432	0.486482	0	0	0.221293	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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