TCONS_00045438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045438
Unique NameTCONS_00045438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045438 ID=TCONS_00045438|Name=TCONS_00045438|organism=Clytia hemisphaerica|type=transcript|length=282bp
TAAAAATCATGAGCTGCAAATAATTTAAAGAGTAATAAAAGAGATTCGTA
ATATTTTCACTACACATTTCAGATTTTGCTTTCATAAATTAGTATCTATT
TCTAATGTTTCTTTTCCAAAaccattttccttttttatagaACTCACAAG
AAACTGCAGTCATGCCtatgttcagaaaaaaatcagtaaataaaaagtta
cttcAAGAAAAACTACGTATTGCAGAAGAAAAACCTGATTCAGTATTTGA
CTTATCTGAATGTGGATTACAAAAGGTGacct
Run BLAST on NCBI

transcript from alignment at sc0007824:25..626+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045438 ID=TCONS_00045438|Name=TCONS_00045438|organism=Clytia hemisphaerica|type=transcript|length=602bp|location=Sequence derived from alignment at sc0007824:25..626+ (Clytia hemisphaerica)
TAAAAATCATGAGCTGCAAATAATTTAAAGAGTAATAAAAGAGATTCGTA
ATATTTTCACTACACATTTCAGATTTTGCTTTCATAAATTAGTATCTATT
TCTAATGTTTCTTTTCCAAAaccattttccttttttatagaACTCACAAG
AAACTGCAGTCATGCCtatgttcagaaaaaaatcagtaaataaaaagtta
cttcAAGAAAAACTACGTATTGTAAGTggctatttttcttttcttgaatt
ttcttctttttggaaACTAATATGTTTGGTTTTAGCTTTGTAACAAATCT
ATGCAAATGTTTGCTAGGACGAAGAAatttaaagaatatttcaacAAGGA
AAATGAATTATACTGTACCTACTGCTAACCACACCCATCCTTCTCTCTCT
GTCCTATTTATCTCTCTCCGTTTTTTTAAGTGTTGTAGCTAGCACTGACT
GCTTGATTGTCAAGTCATTTAATTTGCAACAGATTTCACTCTCTATTTTA
AATCTTTCAgcctttcaattttactttactttttttaacaGGCAGAAGAA
AAACCTGATTCAGTATTTGACTTATCTGAATGTGGATTACAAAAGGTGac
ct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029016XLOC_029016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045438-exon-sc0007824-1491911889:25..245TCONS_00045438-exon-sc0007824-1491911889:25..245Clytia hemisphaericaexon
TCONS_00045438-exon-sc0007824-1510915933:25..245TCONS_00045438-exon-sc0007824-1510915933:25..245Clytia hemisphaericaexon
TCONS_00045438-exon-sc0007824-1575043694:25..245TCONS_00045438-exon-sc0007824-1575043694:25..245Clytia hemisphaericaexon
TCONS_00045438-exon-sc0007824-1491911889:566..626TCONS_00045438-exon-sc0007824-1491911889:566..626Clytia hemisphaericaexon
TCONS_00045438-exon-sc0007824-1510915933:566..626TCONS_00045438-exon-sc0007824-1510915933:566..626Clytia hemisphaericaexon
TCONS_00045438-exon-sc0007824-1575043694:566..626TCONS_00045438-exon-sc0007824-1575043694:566..626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007824supercontigsc0007824:25..626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.006	8.92503	7.63576	9.07119	18.189	14.3732	13.6248	23.7713	6.49478	4.52522	6.34441	4.49138	10.8925	10.6465	4.9235	8.21905	5.78583	11.4899	12.8016	9.64507	14.4379	21.8085	11.5986	16.0683	34.1342	49.3886	10.5682	7.04917	11.2278	16.8866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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