TCONS_00045437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045437
Unique NameTCONS_00045437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045437 ID=TCONS_00045437|Name=TCONS_00045437|organism=Clytia hemisphaerica|type=transcript|length=329bp
GCAACGAGATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACTTACG
GAAAATATTTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATTG
TTATCAGCTCAAGGAAATCCCATCATGTTGAATGCTTCTTATGTTGAAGA
TGAGGAAGTTTTAAAAATGGTGGATGAAATGGACGACCCCATCATCAAAG
CAAGAACGGACCCTATTGGTACCACATACGTATTGCTTGAAGGCGATCGC
TCCATTTGTCGTTTGAAGGAGTGCAACCTGGGAAATTTCTTCGCAGATGC
TTTGGTTGACGCCCAAGTGAAAAATCCTT
Run BLAST on NCBI

protein sequence of TCONS_00045437-protein

>TCONS_00045437-protein ID=TCONS_00045437-protein|Name=TCONS_00045437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
QRDDGTECPVVQDFTYGKYLGNLKLTFDENGKLLSAQGNPIMLNASYVED
EEVLKMVDEMDDPIIKARTDPIGTTYVLLEGDRSICRLKECNLGNFFADA
LVDAQVKNP
Run BLAST on NCBI

transcript from alignment at sc0007822:1..713+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045437 ID=TCONS_00045437|Name=TCONS_00045437|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0007822:1..713+ (Clytia hemisphaerica)
GCAACGAGATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACTTACG
GAAAATATTTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATTG
TTATCAGCTCAAGGAAATCCCATCATGTTGAATGCTTCTTATGTTGAAGA
TGAGGAAGTTTTAAAAATGGTGGATGAAATGGACGACCCCATCATCAAAG
CAAGAACGGTAATTATTTAAAAGTATCTTTGTTTTCGTTTAATAACTTCA
TTTCTATTGCATTTCGTAATGATTGTTAACGTGACTTTCGAATACATGTT
CGTTCTATAGGCAGTGGAGTTCCGAAGAGGTCAGTTATGAAATTGACCGA
AAAAAACTAGGCACATAACCCTATTCCTGGCACTGAGTAAGCTACTAAAA
TGGTACAAAGCATGATTATGGGTTTTAGCTTAAACCTCAGTCCATGTATC
CAGATTTCTATGCAATAGAATAGTTTCAATAGAAAGTCTAAAGACGAGAT
GGTAAATTTAGACACTTACGATACTCACAATCCTCACAAAGTTTTTAAAG
TGATATGTTGTAAAGCTACTCATTTACGTGATATCCTTTTAGGACCCTAT
TGGTACCACATACGTATTGCTTGAAGGCGATCGCTCCATTTGTCGTTTGA
AGGAGTGCAACCTGGGAAATTTCTTCGCAGATGCTTTGGTTGACGCCCAA
GTGAAAAATCCTT

Coding sequence (CDS) from alignment at sc0007822:1..713+

>TCONS_00045437 ID=TCONS_00045437|Name=TCONS_00045437|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0007822:1..713+ (Clytia hemisphaerica)
CAACGAGATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACTTACGG
AAAATATTTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATTGT
TATCAGCTCAAGGAAATCCCATCATGTTGAATGCTTCTTATGTTGAAGAT
GAGGAAGTTTTAAAAATGGTGGATGAAATGGACGACCCCATCATCAAAGC
AAGAACGGACCCTATTGGTACCACATACGTATTGCTTGAAGGCGATCGCT
CCATTTGTCGTTTGAAGGAGTGCAACCTGGGAAATTTCTTCGCAGATGCT
TTGGTTGACGCCCAAGTGAAAAATCCTCAACGAGATGATGGTACTGAATG
TCCAGTCGTCCAAGATTTCACTTACGGAAAATATTTGGGTAATTTGAAGT
TGACTTTCGATGAAAATGGTAAATTGTTATCAGCTCAAGGAAATCCCATC
ATGTTGAATGCTTCTTATGTTGAAGATGAGGAAGTTTTAAAAATGGTGGA
TGAAATGGACGACCCCATCATCAAAGCAAGAACGGACCCTATTGGTACCA
CATACGTATTGCTTGAAGGCGATCGCTCCATTTGTCGTTTGAAGGAGTGC
AACCTGGGAAATTTCTTCGCAGATGCTTTGGTTGACGCCCAAGTGAAAAA
TCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029015XLOC_029015Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045437-proteinTCONS_00045437-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045437-exon-sc0007822-1491911889:1..208TCONS_00045437-exon-sc0007822-1491911889:1..208Clytia hemisphaericaexon
TCONS_00045437-exon-sc0007822-1510915933:1..208TCONS_00045437-exon-sc0007822-1510915933:1..208Clytia hemisphaericaexon
TCONS_00045437-exon-sc0007822-1575043694:1..208TCONS_00045437-exon-sc0007822-1575043694:1..208Clytia hemisphaericaexon
TCONS_00045437-exon-sc0007822-1491911889:593..713TCONS_00045437-exon-sc0007822-1491911889:593..713Clytia hemisphaericaexon
TCONS_00045437-exon-sc0007822-1510915933:593..713TCONS_00045437-exon-sc0007822-1510915933:593..713Clytia hemisphaericaexon
TCONS_00045437-exon-sc0007822-1575043694:593..713TCONS_00045437-exon-sc0007822-1575043694:593..713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007822supercontigsc0007822:1..713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.57318	3.9346	2.24833	0.419439	62.781	48.8357	50.7724	50.7623	22.3818	14.4938	16.6153	13.0462	54.2199	61.3028	15.3176	18.1347	10.6784	16.9272	189.967	206.583	16.6659	10.9124	1.62062	5.19253	7.81147	10.7309	10.0002	9.05228	6.23565	1.94761
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0083345'-Nucleotdase_C
IPR029052Metallo-depent_PP-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009166nucleotide catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009166 nucleotide catabolic process
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00045437 vs. Swiss-Prot (Human)
Match: 5NTD (5'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.184e-25
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:    8 DDGTECPVVQDFTYGKYLGNLKLTFDENGKLLSAQGNPIMLNASYVEDEEVLKMVDEMDDPIIKARTDPIGTTYVLLEGDRSICRLKECNLGNFFADALVDAQVKN 325
            DDG + PVVQ + +GKYLG LK+ FDE G ++S+ GNPI+LN+S  ED  +   +++    +    T  +G T V L+G    CR +ECN+GN   DA+++  +++
Sbjct:  270 DDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRH 375
The following BLAST results are available for this feature:
BLAST of TCONS_00045437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5NTD7.184e-2540.575'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1[more]
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